UBERON:0000026: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers | |comment=GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers | ||
|created_by= | |created_by= | ||
| | |def="Major subdivision of an organism that protrudes from the body[DOS]. Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000026 | |||
|is_a=UBERON:0000475 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=appendage | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim | ||
| | |synonym="limbs/digits/tail" RELATED [MP:0000001] | ||
|union_of= | |||
|xref=AEO:0000193;;BILA:0000018;;CARO:0010003;;EFO:0000799;;EHDAA2:0003193;;EV:0100155;;FBbt:00007000;;HAO:0000144;;MAT:0000023;;MIAA:0000023;;ncithesaurus:Appendage;;OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA;;VSAO:0000075;;XAO:0000218 | |||
}} | }} | ||
Latest revision as of 17:04, 12 September 2014
| Name: | appendage | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Major subdivision of an organism that protrudes from the body[DOS]. Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage] | ||
| Xrefs: |
| ||
| Synonyms: | "limbs/digits/tail" RELATED [MP:0000001] | ||
| Comments: | GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000475(organism subdivision) |
|---|
Children
| is a: | UBERON:0000023 (wing),UBERON:0004708 (paired limb/fin) |
|---|---|
| part of: | UBERON:0007271 (appendage musculature),UBERON:0010758 (subdivision of organism along appendicular axis) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
... further results Mouse (Mus musculus)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000026 (appendage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_40d0752ba23e1209ab4b4a8b5abd8995 | p@chr2:76859417..76859418, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_79c7edd8a1f81e3c471b8883b7045f9e | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_79c7edd8a1f81e3c471b8883b7045f9e | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_79c7edd8a1f81e3c471b8883b7045f9e | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_79c7edd8a1f81e3c471b8883b7045f9e | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_79c7edd8a1f81e3c471b8883b7045f9e | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_79c7edd8a1f81e3c471b8883b7045f9e | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_79c7edd8a1f81e3c471b8883b7045f9e | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_79c7edd8a1f81e3c471b8883b7045f9e | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_79c7edd8a1f81e3c471b8883b7045f9e | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_79c7edd8a1f81e3c471b8883b7045f9e | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_79c7edd8a1f81e3c471b8883b7045f9e | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_79c7edd8a1f81e3c471b8883b7045f9e | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_79c7edd8a1f81e3c471b8883b7045f9e | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_79c7edd8a1f81e3c471b8883b7045f9e | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_79c7edd8a1f81e3c471b8883b7045f9e | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_79c7edd8a1f81e3c471b8883b7045f9e | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_79c7edd8a1f81e3c471b8883b7045f9e | p@chr1:145478051..145478060, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_d4ecd6fc2e87774510d366054efe2ff1 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_d4ecd6fc2e87774510d366054efe2ff1 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_d4ecd6fc2e87774510d366054efe2ff1 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_d4ecd6fc2e87774510d366054efe2ff1 | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_d4ecd6fc2e87774510d366054efe2ff1 | p@chr3:35732964..35732965, + |
