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{{UBERON
{{UBERON
|id=UBERON:0000211
|alt_id=
|name=ligament
|namespace=
|def="Nonparenchymatous organ that primarily consists of dense connective tissue aggregated into fasciculi by connective tissue. Examples: sutural ligament, radiate sternocostal ligament, ligament of liver, ovarian ligament[FMA]." [FMA:21496, Wikipedia:Ligament]
|xref=EFO:0001966;;FMA:21496;;galen:Ligament;;MA:0000113;;ncithesaurus:Ligament;;OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA;;SCTID:182358004;;VHOG:0001272;;XAO:0004031
|is_a=UBERON:0002384
|synonym="ligament organ" EXACT [FMA:21496]
|comment=Note this groups both skeletal and non-skeletal ligaments. What is called a "ligament" in many AOs is actually a skeletal ligament
|comment=Note this groups both skeletal and non-skeletal ligaments. What is called a "ligament" in many AOs is actually a skeletal ligament
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Nonparenchymatous organ that primarily consists of dense connective tissue aggregated into fasciculi by connective tissue. Examples: sutural ligament, radiate sternocostal ligament, ligament of liver, ovarian ligament[FMA]." [FMA:21496, Wikipedia:Ligament]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000211
|is_a=UBERON:0007846
|is_obsolete=
|located_in=
|located_in=
|name=ligament
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of connective tissue that connects bone or cartilage.[TAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="ligament organ" EXACT [FMA:21496]
|union_of=
|xref=EFO:0001966;;FMA:21496;;galen:Ligament;;http://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg;;MA:0000113;;ncithesaurus:Ligament;;OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA;;SCTID:182358004;;TAO:0001682;;VHOG:0001272;;XAO:0004031;;ZFA:0001675
}}
}}

Latest revision as of 17:08, 12 September 2014

Name:ligament
Namespace:FANTOM
Definition:"Nonparenchymatous organ that primarily consists of dense connective tissue aggregated into fasciculi by connective tissue. Examples: sutural ligament, radiate sternocostal ligament, ligament of liver, ovarian ligament[FMA]." [FMA:21496, Wikipedia:Ligament]
Xrefs:
links:

EFO:0001966
FMA:21496
galen:Ligament
[1]
MA:0000113
ncithesaurus:Ligament
OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA
SCTID:182358004
TAO:0001682
VHOG:0001272
XAO:0004031

ZFA:0001675
Synonyms: "ligament organ" EXACT [FMA:21496]
Comments:Note this groups both skeletal and non-skeletal ligaments. What is called a "ligament" in many AOs is actually a skeletal ligament
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0007846(dense regular connective tissue)



Children

is a:UBERON:0008846 (skeletal ligament)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000211 (ligament), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of connective tissue that connects bone or cartilage.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.