UBERON:0002111: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 5: | Line 5: | ||
|def="A portion of smooth muscle tissue that is part of an artery [Obol]." [OBOL:automatic] | |def="A portion of smooth muscle tissue that is part of an artery [Obol]." [OBOL:automatic] | ||
|xref=BTO:0000087;;FMA:72024;;MA:0000708;;ncithesaurus:Artery_Smooth_Muscle_Tissue | |xref=BTO:0000087;;FMA:72024;;MA:0000708;;ncithesaurus:Artery_Smooth_Muscle_Tissue | ||
|is_a= | |is_a=UBERON:0004237;;UBERON:0004695 | ||
|synonym="arterial smooth muscle" EXACT [BTO:0000087];;"artery smooth muscle" EXACT [];;"artery smooth muscle tissue" EXACT [];;"smooth muscle of artery" EXACT [FMA:72024] | |synonym="arterial smooth muscle" EXACT [BTO:0000087];;"artery smooth muscle" EXACT [];;"artery smooth muscle tissue" EXACT [];;"smooth muscle of artery" EXACT [FMA:72024] | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Latest revision as of 13:30, 27 June 2012
| Name: | artery smooth muscle tissue | ||
|---|---|---|---|
| Definition: | "A portion of smooth muscle tissue that is part of an artery [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"arterial smooth muscle" EXACT [BTO:0000087] "artery smooth muscle" EXACT [] "artery smooth muscle tissue" EXACT [] "smooth muscle of artery" EXACT [FMA:72024] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_72024-MA_0000708 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004237(blood vessel smooth muscle),UBERON:0004695(arterial system smooth muscle) |
|---|---|
| part_of: | UBERON:0001637(artery) |
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
- 11325-117E2 (Canine hepatocytes, donor2)
- 11360-117I1 (Smooth Muscle Cells - Aortic, donor2)
- 11374-118A6 (Canine Aortic Smooth Muscle cells, donor2)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11297-117B1 (Canine Aortic Smooth Muscle cells, donor1)
- 11298-117B2 (Chicken Aortic Smooth Muscle cells, donor1)
- 11299-117B3 (Mouse Aortic Smooth Muscle cells, donor1)
- 11300-117B4 (Rat Aortic Smooth Muscle cells, donor1)
- 11325-117E2 (Canine hepatocytes, donor2)
- 11360-117I1 (Smooth Muscle Cells - Aortic, donor2)
- 11374-118A6 (Canine Aortic Smooth Muscle cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002111 (artery smooth muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_867a3fd751ee4c30765e657301bcc3d0 | p@chr2:178190171..178190178, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_867a3fd751ee4c30765e657301bcc3d0 | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_867a3fd751ee4c30765e657301bcc3d0 | p@chr8:69228447..69228492, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_867a3fd751ee4c30765e657301bcc3d0 | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_867a3fd751ee4c30765e657301bcc3d0 | p@chr8:69228447..69228492, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_867a3fd751ee4c30765e657301bcc3d0 | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_867a3fd751ee4c30765e657301bcc3d0 | p@chr2:178190171..178190178, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_867a3fd751ee4c30765e657301bcc3d0 | p@chr17:14827154..14827169, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_867a3fd751ee4c30765e657301bcc3d0 | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_867a3fd751ee4c30765e657301bcc3d0 | p@chr2:112043522..112043530, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_867a3fd751ee4c30765e657301bcc3d0 | p@chr17:14827154..14827169, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_867a3fd751ee4c30765e657301bcc3d0 | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_867a3fd751ee4c30765e657301bcc3d0 | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_867a3fd751ee4c30765e657301bcc3d0 | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_867a3fd751ee4c30765e657301bcc3d0 | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_867a3fd751ee4c30765e657301bcc3d0 | p@chr2:112043522..112043530, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr1:110429102..110429103,+#_d14bd58812f467f0eaf5c89f8c31d9ca | p@chr1:110429102..110429103, + |
| 5.79e-79 | FFCP PHASE1:Hg19::chr1:110429102..110429103,+#_d14bd58812f467f0eaf5c89f8c31d9ca | p@chr1:110429102..110429103, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_3c4b7725b2e4d0cad63dd09f301a1296 | p6@Npy1r |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_3c4b7725b2e4d0cad63dd09f301a1296 | p6@Npy1r |
| 1.33e-65 | FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_3c4b7725b2e4d0cad63dd09f301a1296 | p5@Myl12b |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_3c4b7725b2e4d0cad63dd09f301a1296 | p@chr11:118164535..118164544, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_3c4b7725b2e4d0cad63dd09f301a1296 | p@chrX:160840025..160840037, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_3c4b7725b2e4d0cad63dd09f301a1296 | p@chrX:160840025..160840037, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_3c4b7725b2e4d0cad63dd09f301a1296 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_3c4b7725b2e4d0cad63dd09f301a1296 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_3c4b7725b2e4d0cad63dd09f301a1296 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_3c4b7725b2e4d0cad63dd09f301a1296 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_3c4b7725b2e4d0cad63dd09f301a1296 | p5@Myl12b |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_3c4b7725b2e4d0cad63dd09f301a1296 | p@chr11:118164535..118164544, - |
| 2.21e-65 | FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_022b13768b326085babeb72f3d7491d1 | p1@ENSMUST00000150529 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_022b13768b326085babeb72f3d7491d1 | p1@ENSMUST00000150529 |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_db72a2f962bbbcbc38b83afa94615763 | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_db72a2f962bbbcbc38b83afa94615763 | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_db72a2f962bbbcbc38b83afa94615763 | p@chr17:14817013..14817022, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_db72a2f962bbbcbc38b83afa94615763 | p@chr10:33816181..33816195, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_db72a2f962bbbcbc38b83afa94615763 | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_db72a2f962bbbcbc38b83afa94615763 | p@chr17:14817013..14817022, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_db72a2f962bbbcbc38b83afa94615763 | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_db72a2f962bbbcbc38b83afa94615763 | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_db72a2f962bbbcbc38b83afa94615763 | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_db72a2f962bbbcbc38b83afa94615763 | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_db72a2f962bbbcbc38b83afa94615763 | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_db72a2f962bbbcbc38b83afa94615763 | p@chr17:87544959..87544962, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_db72a2f962bbbcbc38b83afa94615763 | p@chr17:87544959..87544962, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_db72a2f962bbbcbc38b83afa94615763 | p8@Vit |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_db72a2f962bbbcbc38b83afa94615763 | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_db72a2f962bbbcbc38b83afa94615763 | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_db72a2f962bbbcbc38b83afa94615763 | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_db72a2f962bbbcbc38b83afa94615763 | p8@Vit |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_db72a2f962bbbcbc38b83afa94615763 | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_db72a2f962bbbcbc38b83afa94615763 | p@chr10:33816181..33816195, - |
| 1.26e-55 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_c7d72fff915d540ed339d46b5f934066 | p@chr6:53359400..53359406, + |
| 1.26e-55 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_c7d72fff915d540ed339d46b5f934066 | p@chr6:53359400..53359406, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr2:113589030..113589077, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr2:113589030..113589077, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_5f4c32e9820d3beb44c39c71914c84df | p@chr14:24251717..24251731, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_5f4c32e9820d3beb44c39c71914c84df | p5@Npy1r |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr10:67598037..67598049, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_5f4c32e9820d3beb44c39c71914c84df | p@chr14:24251717..24251731, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_5f4c32e9820d3beb44c39c71914c84df | p5@Npy1r |
| 4.9e-53 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_5f4c32e9820d3beb44c39c71914c84df | p4@Il6st |
| 4.9e-53 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_5f4c32e9820d3beb44c39c71914c84df | p4@Il6st |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_5f4c32e9820d3beb44c39c71914c84df | p@chr10:67598037..67598049, - |
| 7.35e-53 | FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_b95d57221cb96c3acdf63427ac8e6e2a | p11@Svep1 |
| 7.35e-53 | FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_b95d57221cb96c3acdf63427ac8e6e2a | p11@Svep1 |
| 1.1e-52 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_160151246210d688a0659a6ccde53e93 | p@chrX:160838787..160838800, + |
| 1.1e-52 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_160151246210d688a0659a6ccde53e93 | p@chrX:160838787..160838800, + |
| 1.65e-52 | FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_d92b8f8e3737a8b9903d08bb68b807ee | p5@Phlda3 |
| 1.65e-52 | FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_d92b8f8e3737a8b9903d08bb68b807ee | p5@Phlda3 |
| 5.51e-52 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_93ec31f42e3f8910d82e8808fd53ec40 | p@chr2:65009852..65009866, - |
| 5.51e-52 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_93ec31f42e3f8910d82e8808fd53ec40 | p@chr2:65009852..65009866, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_0e23c7001ffc64bbbd92020332ef0edf | p@chr13:119579287..119579292, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_0e23c7001ffc64bbbd92020332ef0edf | p@chrX:160838683..160838694, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_0e23c7001ffc64bbbd92020332ef0edf | p@chr2:178190136..178190151, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_0e23c7001ffc64bbbd92020332ef0edf | p@chrX:160838683..160838694, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_0e23c7001ffc64bbbd92020332ef0edf | p@chr13:119579287..119579292, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_0e23c7001ffc64bbbd92020332ef0edf | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_0e23c7001ffc64bbbd92020332ef0edf | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_0e23c7001ffc64bbbd92020332ef0edf | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_0e23c7001ffc64bbbd92020332ef0edf | p@chr17:14813242..14813246, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_0e23c7001ffc64bbbd92020332ef0edf | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_0e23c7001ffc64bbbd92020332ef0edf | p@chr2:178190136..178190151, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_0e23c7001ffc64bbbd92020332ef0edf | p@chr17:14813242..14813246, - |
| 1.66e-44 | FFCP PHASE1:Mm9::chr13:119503185..119503195,+#_6458cbf4533d006863bfd7c4dfb6bb51 | p9@Fgf10 |
| 1.66e-44 | FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_6458cbf4533d006863bfd7c4dfb6bb51 | p@chrX:160839663..160839673, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_6458cbf4533d006863bfd7c4dfb6bb51 | p@chrX:160839663..160839673, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_6458cbf4533d006863bfd7c4dfb6bb51 | p9@Fgf10 |
| 2.33e-44 | FFCP PHASE1:Mm9::chr17:75790300..75790304,+#_d1dedfb76b666c431250eb10c189d15c | p@chr17:75790300..75790304, + |
| 2.33e-44 | FFCP PHASE2:Mm9::chr17:75790300..75790304,+#_d1dedfb76b666c431250eb10c189d15c | p@chr17:75790300..75790304, + |
| 3.27e-44 | FFCP PHASE2:Mm9::chr1:127573708..127573719,+#_9488770c0b46723c928c3b3fde1678e8 | p9@Gpr39 |
| 3.27e-44 | FFCP PHASE1:Mm9::chr1:127573708..127573719,+#_9488770c0b46723c928c3b3fde1678e8 | p9@Gpr39 |
| 4.58e-44 | FFCP PHASE1:Mm9::chr17:14813991..14813999,+#_20e133a2ebc0714be108030ae0adb048 | p@chr17:14813991..14813999, + |
| 4.58e-44 | FFCP PHASE2:Mm9::chr17:14813991..14813999,+#_20e133a2ebc0714be108030ae0adb048 | p@chr17:14813991..14813999, + |
