Personal tools

UBERON:0003464: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003464
|name=hindlimb bone
|namespace=
|def="A bone that is part of a hindlimb [Obol]." [OBOL:automatic]
|xref=EFO:0003842;;GAID:198;;MA:0000660;;ncithesaurus:Bone_of_the_Lower_Extremity;;SCTID:361370006
|is_a=UBERON:0002428
|synonym="bone of hind limb" EXACT [OBOL:automatic];;"bone of hindlimb" EXACT [OBOL:automatic];;"bone of inferior member" EXACT [OBOL:automatic];;"bone of lower extremity" EXACT [OBOL:automatic];;"bone organ of hind limb" EXACT [OBOL:automatic];;"bone organ of hindlimb" EXACT [OBOL:automatic];;"bone organ of inferior member" EXACT [OBOL:automatic];;"bone organ of lower extremity" EXACT [OBOL:automatic];;"hind limb bone" EXACT [OBOL:automatic];;"hind limb bone organ" EXACT [OBOL:automatic];;"hindlimb bone organ" EXACT [OBOL:automatic];;"inferior member bone" EXACT [OBOL:automatic];;"inferior member bone organ" EXACT [OBOL:automatic];;"lower extremity bone" EXACT [OBOL:automatic];;"lower extremity bone organ" EXACT [OBOL:automatic]
|comment=
|alt_id=
|alt_id=
|disjoint_from=
|comment=Note that the MA class is actually bone of pelvic complex; in contrast the NCIT class excludes ilium etc
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bone that is part of a hindlimb region. Examples: any foot phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle)" [UBERON:cjm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0010885
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003464
|is_a=UBERON:0002428 ;;UBERON:0010742 ;;UBERON:0015022
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002103
|name=hindlimb bone
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002103;;UBERON:0001441;;UBERON:0002103
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="bone of hind limb" EXACT [OBOL:automatic];;"bone of hindlimb" EXACT [OBOL:automatic];;"bone of inferior member" EXACT [OBOL:automatic];;"bone of lower extremity" EXACT [OBOL:automatic];;"bone organ of hind limb" EXACT [OBOL:automatic];;"bone organ of hindlimb" EXACT [OBOL:automatic];;"bone organ of inferior member" EXACT [OBOL:automatic];;"bone organ of lower extremity" EXACT [OBOL:automatic];;"hind limb bone" EXACT [OBOL:automatic];;"hind limb bone organ" EXACT [OBOL:automatic];;"hindlimb bone organ" EXACT [OBOL:automatic];;"inferior member bone" EXACT [OBOL:automatic];;"inferior member bone organ" EXACT [OBOL:automatic];;"lower extremity bone" EXACT [OBOL:automatic];;"lower extremity bone organ" EXACT [OBOL:automatic]
|union_of=
|xref=EFO:0003842;;GAID:198;;ncithesaurus:Bone_of_the_Lower_Extremity;;SCTID:361370006
}}
}}

Latest revision as of 17:40, 12 September 2014

Name:hindlimb bone
Namespace:FANTOM
Definition:"A bone that is part of a hindlimb region. Examples: any foot phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle)" [UBERON:cjm]
Xrefs:
links:

EFO:0003842
GAID:198
ncithesaurus:Bone_of_the_Lower_Extremity

SCTID:361370006
Synonyms: "bone of hind limb" EXACT [OBOL:automatic]
"bone of hindlimb" EXACT [OBOL:automatic]
"bone of inferior member" EXACT [OBOL:automatic]
"bone of lower extremity" EXACT [OBOL:automatic]
"bone organ of hind limb" EXACT [OBOL:automatic]
"bone organ of hindlimb" EXACT [OBOL:automatic]
"bone organ of inferior member" EXACT [OBOL:automatic]
"bone organ of lower extremity" EXACT [OBOL:automatic]
"hind limb bone" EXACT [OBOL:automatic]
"hind limb bone organ" EXACT [OBOL:automatic]
"hindlimb bone organ" EXACT [OBOL:automatic]
"inferior member bone" EXACT [OBOL:automatic]
"inferior member bone organ" EXACT [OBOL:automatic]
"lower extremity bone" EXACT [OBOL:automatic]
"lower extremity bone organ" EXACT [OBOL:automatic]
Comments:Note that the MA class is actually bone of pelvic complex; in contrast the NCIT class excludes ilium etc

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002428(limb bone),UBERON:0010742(bone of pelvic complex),UBERON:0015022(hindlimb endochondral element)
develops_from:UBERON:0010885(hindlimb cartilage element)
part_of:UBERON:0002103(hindlimb),UBERON:0001441(hindlimb skeleton),UBERON:0002103(hindlimb)



Children

is a:UBERON:0003608 (hindlimb long bone),UBERON:0005893 (leg bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003464 (hindlimb bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_1d32d6d484fb9d1195edb887dba3e971p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_1d32d6d484fb9d1195edb887dba3e971p26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_61c81adaa8b65390007c8c86323697e7p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_61c81adaa8b65390007c8c86323697e7p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_61c81adaa8b65390007c8c86323697e7p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_61c81adaa8b65390007c8c86323697e7p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_61c81adaa8b65390007c8c86323697e7p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_61c81adaa8b65390007c8c86323697e7p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_bc9311a12c0af0b3c05d513dc9472606p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_bc9311a12c0af0b3c05d513dc9472606p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_b83f8a97b05cc9fe9991c4069b8b0d90p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_b83f8a97b05cc9fe9991c4069b8b0d90p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_9315c33a8438d1c591713a9970d09150p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_9315c33a8438d1c591713a9970d09150p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_9315c33a8438d1c591713a9970d09150p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_9315c33a8438d1c591713a9970d09150p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_9315c33a8438d1c591713a9970d09150p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_9315c33a8438d1c591713a9970d09150p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_9315c33a8438d1c591713a9970d09150p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_9315c33a8438d1c591713a9970d09150p@chr11:67063327..67063335, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_80c29dca8ac440edc05a23bf9e0e8b2fp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_80c29dca8ac440edc05a23bf9e0e8b2fp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_9ac547b8f1135efe9f1f30af94b86093p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_9ac547b8f1135efe9f1f30af94b86093p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_de6114d84538957fac675746bc0849e4p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_de6114d84538957fac675746bc0849e4p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fb7987871bdebe6d6a1b95ead35f8dc1p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fb7987871bdebe6d6a1b95ead35f8dc1p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_1925a60e9ac64ceb98389627fee823e4p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_1925a60e9ac64ceb98389627fee823e4p5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_9097d23b952b559d094fc3e75d12c092p2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_9097d23b952b559d094fc3e75d12c092p2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_0769c1ac6e47aa7f369e23210e117294p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_0769c1ac6e47aa7f369e23210e117294p3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_6d33d3b540b75dd04007270a28600642p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_6d33d3b540b75dd04007270a28600642p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_6d33d3b540b75dd04007270a28600642p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_6d33d3b540b75dd04007270a28600642p2@Oscar
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_c9ab3e90febb30fa81d3dd58268cb10bp4@Lipc
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_c9ab3e90febb30fa81d3dd58268cb10bp4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_c9ab3e90febb30fa81d3dd58268cb10bp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_c9ab3e90febb30fa81d3dd58268cb10bp@chr11:75409652..75409664, +
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_6b15147437e3448dea045b610009606ep6@Sp7
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_6b15147437e3448dea045b610009606ep6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_2b6b368f8881c4566922943cd97e753bp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_2b6b368f8881c4566922943cd97e753bp@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_2b6b368f8881c4566922943cd97e753bp@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_2b6b368f8881c4566922943cd97e753bp@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_f4c89368791382caf554c95d2b444153p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_f4c89368791382caf554c95d2b444153p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_5ef1f082869c0fa679a87b2354113453p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_5ef1f082869c0fa679a87b2354113453p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_5ef1f082869c0fa679a87b2354113453p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_5ef1f082869c0fa679a87b2354113453p@chr12:70396969..70396979, +
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_c5d1e0e089d7d4cbb31296864bc34920p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_c5d1e0e089d7d4cbb31296864bc34920p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_7f067442785abf93e40e5d3b04a81e6dp2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_7f067442785abf93e40e5d3b04a81e6dp2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_5e47136b67bba3e6ba54028b5869a50ap2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_5e47136b67bba3e6ba54028b5869a50ap2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_a212dad2bde26e8a3a8126912d64fa7fp@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_a212dad2bde26e8a3a8126912d64fa7fp@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_659d25280593011f794925d7b7e259bdp1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_659d25280593011f794925d7b7e259bdp@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_659d25280593011f794925d7b7e259bdp1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_659d25280593011f794925d7b7e259bdp@chr11:67056544..67056589, -
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_3bda8bde65fe2b0083fcef921ca814b4p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_3bda8bde65fe2b0083fcef921ca814b4p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_3bda8bde65fe2b0083fcef921ca814b4p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_3bda8bde65fe2b0083fcef921ca814b4p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_bfe6ce6b11499262608f5c2230d05159p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_bfe6ce6b11499262608f5c2230d05159p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_500ff9c6c36220d1aa2d4414225fcae4p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_500ff9c6c36220d1aa2d4414225fcae4p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_a04ea4d3c7dada9e9ff768cab9ecf65dp@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_a04ea4d3c7dada9e9ff768cab9ecf65dp@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_e1458260b08373d9639d37816deca62dp1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_e1458260b08373d9639d37816deca62dp1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_0c5b633e2b252cbc7d24e4dfcb1a1737p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_0c5b633e2b252cbc7d24e4dfcb1a1737p6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_e20ad0d2f5ff59acd149e355032f4718p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_e20ad0d2f5ff59acd149e355032f4718p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_548625629c55258fd4bfafd8e62f047fp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_548625629c55258fd4bfafd8e62f047fp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_548625629c55258fd4bfafd8e62f047fp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_548625629c55258fd4bfafd8e62f047fp@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_d1aa5f95e0a571c4b1a2828f342aaafep4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_d1aa5f95e0a571c4b1a2828f342aaafep4@Sgca
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_dbc2e5cc325854b724ab0400b3fba00bp1@Mepe
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_dbc2e5cc325854b724ab0400b3fba00bp1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_39fbe189171ab46ba0af1669c2f3b2c8p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_39fbe189171ab46ba0af1669c2f3b2c8p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_39fbe189171ab46ba0af1669c2f3b2c8p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_39fbe189171ab46ba0af1669c2f3b2c8p2@Tm4sf19
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_0e43d619188a4c3fdcf11e3d84fa85f3p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_0e43d619188a4c3fdcf11e3d84fa85f3p5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_0e43d619188a4c3fdcf11e3d84fa85f3p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_0e43d619188a4c3fdcf11e3d84fa85f3p@chr15:97806574..97806585, -
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_3afdf57cf2f1f64af65d1925c8ef43c2p@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_3afdf57cf2f1f64af65d1925c8ef43c2p2@Siglec15

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003464&oldid=3277554"