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{{UBERON
{{UBERON
|id=UBERON:0005172
|alt_id=
|name=abdomen organ
|namespace=
|def="An organ that is part of an abdomen [Obol]." [OBOL:automatic]
|xref=MA:0000522;;SCTID:272631008
|is_a=UBERON:0005173
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ that is part of an abdomen [Obol]." [OBOL:automatic]
|subset=organ_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005172
|is_a=UBERON:0005173
|is_obsolete=
|located_in=
|located_in=
|name=abdomen element
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000916
|part_of=UBERON:0000916
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym=
|union_of=
|xref=MA:0000522;;SCTID:272631008
}}
}}

Latest revision as of 17:51, 12 September 2014

Name:abdomen element
Namespace:FANTOM
Definition:"An organ that is part of an abdomen [Obol]." [OBOL:automatic]
Xrefs:
links:

MA:0000522

SCTID:272631008
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005173(abdominal segment element)
part_of:UBERON:0000916(abdomen)



Children

is a:UBERON:0002107 (liver),UBERON:0002113 (kidney),UBERON:0006858 (adrenal/interrenal gland),UBERON:0017672 (abdominal viscera)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005172 (abdomen element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.35e-50FFCP PHASE2:Hg19::chr10:99344428..99344441,+#_3c437716ae519ecef9a6f436a6aa98dbp5@PI4K2A
1.35e-50FFCP PHASE1:Hg19::chr10:99344428..99344441,+#_3c437716ae519ecef9a6f436a6aa98dbp5@PI4K2A
7.25e-46FFCP PHASE2:Hg19::chr16:57831685..57831697,-#_e1b67a19db08a67ccbdcfd79f2db6791p7@KIFC3
7.25e-46FFCP PHASE1:Hg19::chr16:57831685..57831697,-#_e1b67a19db08a67ccbdcfd79f2db6791p7@KIFC3
6.78e-43FFCP PHASE2:Hg19::chr1:55331310..55331365,-#_aa5c1ccde7367d024808113d00cbf067p3@DHCR24
6.78e-43FFCP PHASE1:Hg19::chr1:55331310..55331365,-#_aa5c1ccde7367d024808113d00cbf067p3@DHCR24
1.49e-41FFCP PHASE2:Hg19::chr8:21911054..21911086,+#_0caa2d3d23bfa0bc57b83c6abcc9762bp9@EPB49
1.49e-41FFCP PHASE1:Hg19::chr8:21911054..21911086,+#_0caa2d3d23bfa0bc57b83c6abcc9762bp9@EPB49
5.67e-41FFCP PHASE1:Hg19::chr11:117695449..117695466,-#_2ed77fa7ddf3ca976db04212b4c95c72p1@FXYD2
5.67e-41FFCP PHASE2:Hg19::chr11:117695449..117695466,-#_2ed77fa7ddf3ca976db04212b4c95c72p1@FXYD2
7.6e-41FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_de8b623b112c2db593727d94d98c92edp4@PAX2
7.6e-41FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_de8b623b112c2db593727d94d98c92edp4@PAX2
7.31e-40FFCP PHASE2:Mm9::chr4:95246108..95246119,+#_2b740aeae2a7c079cc34b690ad9d57abp4@Fggy
7.31e-40FFCP PHASE1:Mm9::chr4:95246108..95246119,+#_2b740aeae2a7c079cc34b690ad9d57abp4@Fggy
3.21e-39FFCP PHASE2:Mm9::chr12:58298278..58298292,-#_e7145ce48f23287e1982701ef574cb62p4@Slc25a21
3.21e-39FFCP PHASE1:Mm9::chr12:58298278..58298292,-#_e7145ce48f23287e1982701ef574cb62p4@Slc25a21
1.15e-38FFCP PHASE2:Mm9::chr12:58298298..58298317,-#_797a89d12b13497722568abfd8432632p3@Slc25a21
1.15e-38FFCP PHASE1:Mm9::chr12:58298298..58298317,-#_797a89d12b13497722568abfd8432632p3@Slc25a21
4.6e-38FFCP PHASE2:Mm9::chr12:58298249..58298262,-#_b8bf2b0d4c0d8bd406f4e4f4915495d0p5@Slc25a21
4.6e-38FFCP PHASE1:Mm9::chr12:58298249..58298262,-#_b8bf2b0d4c0d8bd406f4e4f4915495d0p5@Slc25a21
4.65e-37FFCP PHASE1:Mm9::chr4:129255765..129255776,-#_7f49dcf04f548c411e9ca6eccd157ffbp2@Fam167b
4.65e-37FFCP PHASE2:Mm9::chr4:129255765..129255776,-#_7f49dcf04f548c411e9ca6eccd157ffbp2@Fam167b
4.76e-37FFCP PHASE1:Hg19::chr20:42187656..42187673,+#_b443addd8212b2a465fca2d316171cdap2@SGK2
4.76e-37FFCP PHASE2:Hg19::chr20:42187656..42187673,+#_b443addd8212b2a465fca2d316171cdap2@SGK2
3.18e-36FFCP PHASE2:Hg19::chr7:44580918..44580934,-#_71311726d44c765fb760744a584b9793p2@NPC1L1
3.18e-36FFCP PHASE1:Hg19::chr7:44580918..44580934,-#_71311726d44c765fb760744a584b9793p2@NPC1L1
5.26e-36FFCP PHASE2:Hg19::chr7:44580861..44580912,-#_e7d2b461d928e389f9001253855f4925p1@NPC1L1
5.26e-36FFCP PHASE1:Hg19::chr7:44580861..44580912,-#_e7d2b461d928e389f9001253855f4925p1@NPC1L1
8.22e-36FFCP PHASE2:Mm9::chr6:34129226..34129246,+#_402618d0c20f69aa0faaf45ca8ab1668p2@ENSMUST00000145644
8.22e-36FFCP PHASE1:Mm9::chr6:34129226..34129246,+#_402618d0c20f69aa0faaf45ca8ab1668p2@ENSMUST00000145644
1.41e-35FFCP PHASE2:Mm9::chr10:58904532..58904548,-#_7f38209f7bd1ba1b16121202b0c5396ep3@Oit3
1.41e-35FFCP PHASE1:Mm9::chr10:58904532..58904548,-#_7f38209f7bd1ba1b16121202b0c5396ep3@Oit3
1.53e-35FFCP PHASE2:Mm9::chr8:73247943..73247958,+#_424d59b17287532a74b59c595a4a6178p3@Pde4c
1.53e-35FFCP PHASE1:Mm9::chr8:73247943..73247958,+#_424d59b17287532a74b59c595a4a6178p3@Pde4c
3.31e-35FFCP PHASE2:Mm9::chr9:44611035..44611044,-#_6528d9d8a92e70c03a175923ddd885c8p4@Ttc36
3.31e-35FFCP PHASE1:Mm9::chr9:44611035..44611044,-#_6528d9d8a92e70c03a175923ddd885c8p4@Ttc36
4.76e-35FFCP PHASE2:Hg19::chr4:155484103..155484147,+#_813b25a92c64596ce9fb2cbd3d3bf1e8p2@FGB
4.76e-35FFCP PHASE1:Hg19::chr4:155484103..155484147,+#_813b25a92c64596ce9fb2cbd3d3bf1e8p2@FGB
8.38e-35FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_68d351cd22000b7ac696833d855ed884p7@HOXA10
8.38e-35FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_68d351cd22000b7ac696833d855ed884p7@HOXA10
1.64e-34FFCP PHASE2:Mm9::chr19:12707997..12708015,+#_b80f98b2a328f5011fb85c24b055f3b2p1@Glyat
1.64e-34FFCP PHASE1:Mm9::chr19:12707997..12708015,+#_b80f98b2a328f5011fb85c24b055f3b2p1@Glyat
2.61e-34FFCP PHASE1:Mm9::chr11:60622345..60622377,-#_7e841019d2f1f0fe09484b5e93d8dedep@chr11:60622345..60622377, -
2.61e-34FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_7095b54194c31b0e3cefa03b2645af2cp@chr19:1826957..1826984, -
2.61e-34FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_7095b54194c31b0e3cefa03b2645af2cp@chr19:1826957..1826984, -
2.61e-34FFCP PHASE2:Mm9::chr11:60622345..60622377,-#_7e841019d2f1f0fe09484b5e93d8dedep@chr11:60622345..60622377, -
3.01e-34FFCP PHASE1:Hg19::chr7:5461523..5461542,-#_667a09ac9d2cefda548248cfd10ae63ep7@TNRC18
3.01e-34FFCP PHASE2:Hg19::chr7:5461523..5461542,-#_667a09ac9d2cefda548248cfd10ae63ep7@TNRC18
3.02e-34FFCP PHASE2:Hg19::chr2:74669504..74669520,-#_f84be5d8b588b8c6bbc08ce7e1a46558p9@RTKN
3.02e-34FFCP PHASE1:Hg19::chr2:74669504..74669520,-#_f84be5d8b588b8c6bbc08ce7e1a46558p9@RTKN
5.07e-34FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_124af10d936cc7fa9799f1373e350e74p1@ENST00000418041, p1@ENST00000443104
5.07e-34FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_124af10d936cc7fa9799f1373e350e74p1@ENST00000418041, p1@ENST00000443104
5.11e-34FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_462cdceb631ebe81b28d0605b7a6ae61p5@NR1H4
5.11e-34FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_462cdceb631ebe81b28d0605b7a6ae61p5@NR1H4
8.0e-34FFCP PHASE2:Mm9::chr11:7097807..7097814,+#_07370d29625738b328467c3334fad88cp2@Igfbp1
8.0e-34FFCP PHASE1:Mm9::chr11:7097807..7097814,+#_07370d29625738b328467c3334fad88cp2@Igfbp1
1.07e-33FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_72d4903988625e9a7c142e04497352e2p3@PAX2
1.07e-33FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_72d4903988625e9a7c142e04497352e2p3@PAX2
1.27e-33FFCP PHASE2:Mm9::chr13:23931270..23931311,+#_a1736d61b33afd35a3f036f791b7e56bp2@Slc17a3
1.27e-33FFCP PHASE1:Mm9::chr13:23931270..23931311,+#_a1736d61b33afd35a3f036f791b7e56bp2@Slc17a3
1.4e-33FFCP PHASE1:Mm9::chr4:95246137..95246153,+#_c136ad32460a72b1e9fa8963c2dddc4ep3@Fggy
1.4e-33FFCP PHASE2:Mm9::chr4:95246137..95246153,+#_c136ad32460a72b1e9fa8963c2dddc4ep3@Fggy
1.76e-33FFCP PHASE2:Mm9::chr16:37621995..37622022,-#_9276ae15e65eefd388682f04b84984ddp@chr16:37621995..37622022, -
1.76e-33FFCP PHASE1:Mm9::chr16:37621995..37622022,-#_9276ae15e65eefd388682f04b84984ddp@chr16:37621995..37622022, -
1.77e-33FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_946e96eecd7405acad4b3615c1ad9203p@chr18:3456189..3456200, +
1.77e-33FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_946e96eecd7405acad4b3615c1ad9203p@chr18:3456189..3456200, +
2.2e-33FFCP PHASE1:Mm9::chr4:96330769..96330789,-#_607254efb150397be3b0ef5049f10114p2@Cyp2j5
2.2e-33FFCP PHASE2:Mm9::chr4:96330769..96330789,-#_607254efb150397be3b0ef5049f10114p2@Cyp2j5
2.92e-33FFCP PHASE1:Mm9::chr13:23931467..23931489,+#_edc4b822fab308ab9285345237892d48p3@Slc17a3
2.92e-33FFCP PHASE2:Mm9::chr13:23931467..23931489,+#_edc4b822fab308ab9285345237892d48p3@Slc17a3
5.26e-33FFCP PHASE2:Mm9::chr16:37580223..37580237,+#_82d874488009a4effd16ea9100c58306p4@Hgd
5.26e-33FFCP PHASE1:Mm9::chr16:37580223..37580237,+#_82d874488009a4effd16ea9100c58306p4@Hgd
5.56e-33FFCP PHASE2:Hg19::chr2:693380..693398,+#_41227dbf6bc146dee90fd78fe70658b2p@chr2:693380..693398, +
5.56e-33FFCP PHASE1:Hg19::chr2:693380..693398,+#_41227dbf6bc146dee90fd78fe70658b2p@chr2:693380..693398, +
8.68e-33FFCP PHASE2:Mm9::chr1:141398256..141398267,+#_290ae71c6548cb53212a31b75a73d6d1p3@F13b
8.68e-33FFCP PHASE1:Mm9::chr1:141398256..141398267,+#_290ae71c6548cb53212a31b75a73d6d1p3@F13b
1.09e-32FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_c4c31a66235c9d4ab3c03bfc06c8ef14p1@ENST00000421143
1.09e-32FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_c4c31a66235c9d4ab3c03bfc06c8ef14p1@ENST00000421143
1.21e-32FFCP PHASE2:Mm9::chr15:82624876..82624892,-#_4c710c5bdb1b07f22e26e91133b3286dp5@Cyp2d26
1.21e-32FFCP PHASE1:Mm9::chr15:82624876..82624892,-#_4c710c5bdb1b07f22e26e91133b3286dp5@Cyp2d26
1.25e-32FFCP PHASE2:Mm9::chr10:95305558..95305580,-#_7b4c9b3085230ea76bbbb004e9900508p@chr10:95305558..95305580, -
1.25e-32FFCP PHASE1:Mm9::chr10:95305558..95305580,-#_7b4c9b3085230ea76bbbb004e9900508p@chr10:95305558..95305580, -
1.68e-32FFCP PHASE1:Mm9::chr9:44609886..44609901,-#_4c31e83086675c35f7b27978e6bd800cp@chr9:44609886..44609901, -
1.68e-32FFCP PHASE2:Mm9::chr9:44609886..44609901,-#_4c31e83086675c35f7b27978e6bd800cp@chr9:44609886..44609901, -
1.75e-32FFCP PHASE2:Mm9::chr16:37580298..37580310,+#_01fea15df5ed2dbb5f59d1729abd0fffp3@Hgd
1.75e-32FFCP PHASE1:Mm9::chr16:37580298..37580310,+#_01fea15df5ed2dbb5f59d1729abd0fffp3@Hgd
2.0e-32FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_49078a51fb16f77a8e1770c52a25ed16p2@PAX2
2.0e-32FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_49078a51fb16f77a8e1770c52a25ed16p2@PAX2
2.22e-32FFCP PHASE1:Hg19::chr12:100867695..100867706,+#_8e4e8fd49cf950f85d588bfe206fe1f7p6@NR1H4
2.22e-32FFCP PHASE2:Hg19::chr12:100867695..100867706,+#_8e4e8fd49cf950f85d588bfe206fe1f7p6@NR1H4
2.68e-32FFCP PHASE1:Mm9::chr15:9265320..9265378,+#_4273814271b9fe1131030142bb30f29cp1@Ugt3a2
2.68e-32FFCP PHASE2:Mm9::chr15:9265320..9265378,+#_4273814271b9fe1131030142bb30f29cp1@Ugt3a2
3.54e-32FFCP PHASE2:Mm9::chr4:150283537..150283568,-#_9a16c9e62697b9dfc4e42b2efa70e7f4p5@Park7
3.54e-32FFCP PHASE1:Mm9::chr4:150283537..150283568,-#_9a16c9e62697b9dfc4e42b2efa70e7f4p5@Park7
3.97e-32FFCP PHASE2:Mm9::chr9:44609861..44609874,-#_2f1c324c31d1326b0481933f0bc992c0p@chr9:44609861..44609874, -
3.97e-32FFCP PHASE1:Mm9::chr9:44609861..44609874,-#_2f1c324c31d1326b0481933f0bc992c0p@chr9:44609861..44609874, -
4.46e-32FFCP PHASE2:Hg19::chr15:58724170..58724183,+#_0ff9db4fae351149bf71a11d0eb0e816p3@LIPC
4.46e-32FFCP PHASE1:Hg19::chr15:58724170..58724183,+#_0ff9db4fae351149bf71a11d0eb0e816p3@LIPC
4.57e-32FFCP PHASE1:Hg19::chr15:58724184..58724197,+#_0e57ce585e0417cfdda426c68a13c736p2@LIPC
4.57e-32FFCP PHASE2:Hg19::chr15:58724184..58724197,+#_0e57ce585e0417cfdda426c68a13c736p2@LIPC

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