Personal tools

UBERON:0008202: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0008202
|name=bone of hip region
|namespace=
|def=
|xref=MA:0000655
|is_a=UBERON:0003464;;UBERON:0007828
|synonym=
|comment=in MA, this includes the femur. i.e. pelvic girdle bone or femur
|alt_id=
|alt_id=
|disjoint_from=
|comment=in MA, this includes the femur. i.e. pelvic girdle bone or femur; note that this makes the ilium etc in MA hindlimb bones. in MA this is a hindlimb bone
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008202
|is_a=UBERON:0001474
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001464
|name=bone of hip region
|namespace=FANTOM
|obo_creation_date=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=MA:0000655
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:bone of hip region
Namespace:FANTOM
Xrefs:
links:
MA:0000655
Comments:in MA, this includes the femur. i.e. pelvic girdle bone or femur; note that this makes the ilium etc in MA hindlimb bones. in MA this is a hindlimb bone

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001474(bone element)



Children

is a:UBERON:0000981 (femur)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008202 (bone of hip region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_02dcbfcf9431b788dc686de1fb9f0ab3p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_02dcbfcf9431b788dc686de1fb9f0ab3p26@Myo18a
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_358896e92e560b01b8d0138f9f31cdebp@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_358896e92e560b01b8d0138f9f31cdebp@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_358896e92e560b01b8d0138f9f31cdebp@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_358896e92e560b01b8d0138f9f31cdebp@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_358896e92e560b01b8d0138f9f31cdebp@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_358896e92e560b01b8d0138f9f31cdebp@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_dad009418cbe74f38949e6fda1092f03p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_dad009418cbe74f38949e6fda1092f03p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_c943129c03c7e055b57673b799fcc0c1p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_c943129c03c7e055b57673b799fcc0c1p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_d9bd133625cda381d6110aa6e4363391p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_d9bd133625cda381d6110aa6e4363391p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_d9bd133625cda381d6110aa6e4363391p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_d9bd133625cda381d6110aa6e4363391p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_d9bd133625cda381d6110aa6e4363391p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_d9bd133625cda381d6110aa6e4363391p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_d9bd133625cda381d6110aa6e4363391p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_d9bd133625cda381d6110aa6e4363391p@chr11:67063327..67063335, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_485806c5407a296b91f734d49ae3d971p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_485806c5407a296b91f734d49ae3d971p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_599db5b93e5b53f682a5e249fe377a10p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_599db5b93e5b53f682a5e249fe377a10p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_33a3e1647bce0ae29db99c2ed447afe1p3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_33a3e1647bce0ae29db99c2ed447afe1p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_829a7781c4a3058099eec33f7f19f3dcp@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_829a7781c4a3058099eec33f7f19f3dcp@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_6a21a0b2c5613f0a2e63234738f2d868p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_6a21a0b2c5613f0a2e63234738f2d868p5@Pla2g5
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_1bdbbeefe9b8d5969a2479923d59a1a8p2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_1bdbbeefe9b8d5969a2479923d59a1a8p2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_585df6742c85ec7d653243a082d655e7p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_585df6742c85ec7d653243a082d655e7p3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_b276552b3333ba2519782bf2931c4b8dp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_b276552b3333ba2519782bf2931c4b8dp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_b276552b3333ba2519782bf2931c4b8dp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_b276552b3333ba2519782bf2931c4b8dp2@Oscar
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_09b836a132a7f520adb0c86443120cb5p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_09b836a132a7f520adb0c86443120cb5p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_09b836a132a7f520adb0c86443120cb5p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_09b836a132a7f520adb0c86443120cb5p4@Lipc
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_57b17cb62ff15993ac05c89a6cfae849p6@Sp7
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_57b17cb62ff15993ac05c89a6cfae849p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_bff97be40fa85ef525763ea8ef95881ep@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_bff97be40fa85ef525763ea8ef95881ep@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_bff97be40fa85ef525763ea8ef95881ep@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_bff97be40fa85ef525763ea8ef95881ep@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_a7541fab5ec763abc4d0e1e646506264p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_a7541fab5ec763abc4d0e1e646506264p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_a710bd8e6982149cb165c6a8fc223527p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_a710bd8e6982149cb165c6a8fc223527p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_a710bd8e6982149cb165c6a8fc223527p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_a710bd8e6982149cb165c6a8fc223527p@chr12:70396969..70396979, +
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_daed506810080eb43017981ba1d39e25p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_daed506810080eb43017981ba1d39e25p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_3cce8ddf9276f7f1ecfa38a963a4f684p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_3cce8ddf9276f7f1ecfa38a963a4f684p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_278d2a9c6c62c194c1ecaef3afee6888p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_278d2a9c6c62c194c1ecaef3afee6888p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_513748193b7538b2dac0a886e31f391dp@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_513748193b7538b2dac0a886e31f391dp@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_12fd003a9e5d939da6b3d6a704d4086ap@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_12fd003a9e5d939da6b3d6a704d4086ap@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_12fd003a9e5d939da6b3d6a704d4086ap1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_12fd003a9e5d939da6b3d6a704d4086ap1@Msmp
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_cb5bcb2fc5f3edfec6fb18bd454a57dcp@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_cb5bcb2fc5f3edfec6fb18bd454a57dcp@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_cb5bcb2fc5f3edfec6fb18bd454a57dcp@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_cb5bcb2fc5f3edfec6fb18bd454a57dcp@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_759f4d75f246f4cbf9b3f2581964201dp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_759f4d75f246f4cbf9b3f2581964201dp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_eaa3ae7d800bcbbe167cfee4aac58bfdp@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_eaa3ae7d800bcbbe167cfee4aac58bfdp@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_b81dd74a92c0488eada83b89b5370dafp@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_b81dd74a92c0488eada83b89b5370dafp@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_01a9fa58d2698e1c6e40b37eb3086b94p1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_01a9fa58d2698e1c6e40b37eb3086b94p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_f51739dd40b10ee73d06fa31037aeb32p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_f51739dd40b10ee73d06fa31037aeb32p6@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_1288800322c253978eb5658350573470p7@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_1288800322c253978eb5658350573470p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_acc48efb57660d3b776a0c42d79397b6p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_acc48efb57660d3b776a0c42d79397b6p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_acc48efb57660d3b776a0c42d79397b6p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_acc48efb57660d3b776a0c42d79397b6p@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_8de67870d5777541af2d1c2718621201p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_8de67870d5777541af2d1c2718621201p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_bc0fedc23c8e61bbf06323266a460f9fp1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_bc0fedc23c8e61bbf06323266a460f9fp1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_416e479276b13ff40196ebfadf4451b4p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_416e479276b13ff40196ebfadf4451b4p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_416e479276b13ff40196ebfadf4451b4p2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_416e479276b13ff40196ebfadf4451b4p2@Tm4sf19
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_ffb13d88e7a25bba6e3b0aaf4774cca5p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_ffb13d88e7a25bba6e3b0aaf4774cca5p5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_ffb13d88e7a25bba6e3b0aaf4774cca5p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_ffb13d88e7a25bba6e3b0aaf4774cca5p@chr15:97806574..97806585, -
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_2b8cc9adf466bcb9526541a623456905p@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_2b8cc9adf466bcb9526541a623456905p2@Siglec15

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0008202&oldid=3277929"