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{{CL
{{CL
|id=CL:0002604
|alt_id=
|name=astrocyte of the hippocampus
|namespace=cell
|def=
|xref=
|is_a=CL:0000127
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T06:57:33Z
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002604
|is_a=CL:0012000 ;;CL:1001580
|is_obsolete=
|located_in=
|located_in=
|name=astrocyte of the hippocampus
|namespace=FANTOM
|obo_creation_date=2011-03-06T06:57:33Z
|part_of=UBERON:0001954
|part_of=UBERON:0001954
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:astrocyte of the hippocampus
Namespace:FANTOM
Created by:tmeehan
Creation date:2011-03-06T06:57:33Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0012000(astrocyte of the forebrain),CL:1001580(hippocampus glial cell)
part_of:UBERON:0001954(Ammon's horn)



Children


is a:FF:0000193 (astrocyte of the hippocampus)
derives from:FF:0000197 (mouse astrocyte of hippocampus sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002604 (astrocyte of the hippocampus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr9:122478206..122478208,+#_2425ec808db122db2f1593a7a9f98d55p@chr9:122478206..122478208, +
1.87e-86FFCP PHASE1:Mm9::chr1:72827387..72827393,-#_2425ec808db122db2f1593a7a9f98d55p@chr1:72827387..72827393, -
1.87e-86FFCP PHASE2:Mm9::chr1:72827387..72827393,-#_2425ec808db122db2f1593a7a9f98d55p@chr1:72827387..72827393, -
1.87e-86FFCP PHASE1:Mm9::chr9:122478206..122478208,+#_2425ec808db122db2f1593a7a9f98d55p@chr9:122478206..122478208, +
1.68e-58FFCP PHASE2:Mm9::chr6:84135739..84135768,+#_f7401bff6ddbd704915df9cdcaf5886ap@chr6:84135739..84135768, +
1.68e-58FFCP PHASE1:Mm9::chr6:84135739..84135768,+#_f7401bff6ddbd704915df9cdcaf5886ap@chr6:84135739..84135768, +
1.68e-58FFCP PHASE2:Mm9::chr14:70592586..70592593,-#_f7401bff6ddbd704915df9cdcaf5886ap@chr14:70592586..70592593, -
1.68e-58FFCP PHASE1:Mm9::chr14:70592586..70592593,-#_f7401bff6ddbd704915df9cdcaf5886ap@chr14:70592586..70592593, -
1.68e-58FFCP PHASE1:Mm9::chr16:15895817..15895825,-#_f7401bff6ddbd704915df9cdcaf5886ap@chr16:15895817..15895825, -
1.68e-58FFCP PHASE1:Mm9::chr1:135936902..135936908,+#_f7401bff6ddbd704915df9cdcaf5886ap@chr1:135936902..135936908, +
1.68e-58FFCP PHASE2:Mm9::chr12:86222392..86222395,-#_f7401bff6ddbd704915df9cdcaf5886ap@chr12:86222392..86222395, -
1.68e-58FFCP PHASE1:Mm9::chr1:169619239..169619257,+#_f7401bff6ddbd704915df9cdcaf5886ap4@Lmx1a
1.68e-58FFCP PHASE2:Mm9::chr16:15895817..15895825,-#_f7401bff6ddbd704915df9cdcaf5886ap@chr16:15895817..15895825, -
1.68e-58FFCP PHASE2:Mm9::chr1:135936902..135936908,+#_f7401bff6ddbd704915df9cdcaf5886ap@chr1:135936902..135936908, +
1.68e-58FFCP PHASE2:Mm9::chr11:66340488..66340520,-#_f7401bff6ddbd704915df9cdcaf5886ap@chr11:66340488..66340520, -
1.68e-58FFCP PHASE1:Mm9::chr12:86222392..86222395,-#_f7401bff6ddbd704915df9cdcaf5886ap@chr12:86222392..86222395, -
1.68e-58FFCP PHASE1:Mm9::chr11:66340488..66340520,-#_f7401bff6ddbd704915df9cdcaf5886ap@chr11:66340488..66340520, -
1.68e-58FFCP PHASE2:Mm9::chr1:169619239..169619257,+#_f7401bff6ddbd704915df9cdcaf5886ap4@Lmx1a
1.66e-44FFCP PHASE1:Mm9::chr1:135937391..135937415,+#_fd352ddb48125926cd5da7dac47ca0c0p@chr1:135937391..135937415, +
1.66e-44FFCP PHASE2:Mm9::chr2:38207200..38207210,+#_fd352ddb48125926cd5da7dac47ca0c0p13@Lhx2
1.66e-44FFCP PHASE1:Mm9::chr2:38207200..38207210,+#_fd352ddb48125926cd5da7dac47ca0c0p13@Lhx2
1.66e-44FFCP PHASE1:Mm9::chr9:43915826..43915844,+#_fd352ddb48125926cd5da7dac47ca0c0p@chr9:43915826..43915844, +
1.66e-44FFCP PHASE2:Mm9::chr7:149885426..149885434,-#_fd352ddb48125926cd5da7dac47ca0c0p2@Ins2
1.66e-44FFCP PHASE2:Mm9::chr1:135937391..135937415,+#_fd352ddb48125926cd5da7dac47ca0c0p@chr1:135937391..135937415, +
1.66e-44FFCP PHASE1:Mm9::chr7:149885426..149885434,-#_fd352ddb48125926cd5da7dac47ca0c0p2@Ins2
1.66e-44FFCP PHASE2:Mm9::chr9:43915826..43915844,+#_fd352ddb48125926cd5da7dac47ca0c0p@chr9:43915826..43915844, +
2.75e-44FFCP PHASE1:Mm9::chr1:135808073..135808085,-#_77768e38ce7f686e2cae69934f341065p@chr1:135808073..135808085, -
2.75e-44FFCP PHASE2:Mm9::chr17:26758457..26758466,+#_77768e38ce7f686e2cae69934f341065p10@Ergic1
2.75e-44FFCP PHASE1:Mm9::chr17:26758457..26758466,+#_77768e38ce7f686e2cae69934f341065p10@Ergic1
2.75e-44FFCP PHASE2:Mm9::chr1:135808073..135808085,-#_77768e38ce7f686e2cae69934f341065p@chr1:135808073..135808085, -
4.52e-44FFCP PHASE2:Mm9::chr16:15957833..15957836,-#_e3cce2a862661277191670f92449f124p@chr16:15957833..15957836, -
4.52e-44FFCP PHASE2:Mm9::chr14:70591272..70591278,-#_e3cce2a862661277191670f92449f124p@chr14:70591272..70591278, -
4.52e-44FFCP PHASE1:Mm9::chr16:15957833..15957836,-#_e3cce2a862661277191670f92449f124p@chr16:15957833..15957836, -
4.52e-44FFCP PHASE1:Mm9::chr14:70591272..70591278,-#_e3cce2a862661277191670f92449f124p@chr14:70591272..70591278, -
4.55e-44FFCP PHASE2:Mm9::chr18:69681228..69681237,+#_01b6a6247be9482cd555adf0b0a54344p44@Tcf4
4.55e-44FFCP PHASE2:Mm9::chr8:28089083..28089090,+#_01b6a6247be9482cd555adf0b0a54344p@chr8:28089083..28089090, +
4.55e-44FFCP PHASE1:Mm9::chr18:69681228..69681237,+#_01b6a6247be9482cd555adf0b0a54344p44@Tcf4
4.55e-44FFCP PHASE1:Mm9::chr8:28089083..28089090,+#_01b6a6247be9482cd555adf0b0a54344p@chr8:28089083..28089090, +
7.52e-44FFCP PHASE1:Mm9::chr6:92777773..92777784,+#_f528f7d31442bf966858de51a4b134ecp4@ENSMUST00000133858
7.52e-44FFCP PHASE2:Mm9::chr6:92777773..92777784,+#_f528f7d31442bf966858de51a4b134ecp4@ENSMUST00000133858
1.24e-43FFCP PHASE2:Mm9::chr15:88808274..88808289,-#_5a7ba58a8c885690315b59acdca666bfp@chr15:88808274..88808289, -
1.24e-43FFCP PHASE1:Mm9::chr15:88808274..88808289,-#_5a7ba58a8c885690315b59acdca666bfp@chr15:88808274..88808289, -
4.23e-36FFCP PHASE1:Mm9::chr16:15895800..15895814,-#_7704a54c83fd557044b54326dd3e9696p@chr16:15895800..15895814, -
4.23e-36FFCP PHASE2:Mm9::chr1:72895881..72895885,-#_7704a54c83fd557044b54326dd3e9696p@chr1:72895881..72895885, -
4.23e-36FFCP PHASE2:Mm9::chr1:135811313..135811319,-#_7704a54c83fd557044b54326dd3e9696p@chr1:135811313..135811319, -
4.23e-36FFCP PHASE2:Mm9::chr11:75244815..75244826,-#_7704a54c83fd557044b54326dd3e9696p@chr11:75244815..75244826, -
4.23e-36FFCP PHASE1:Mm9::chr8:73022520..73022524,+#_7704a54c83fd557044b54326dd3e9696p@chr8:73022520..73022524, +
4.23e-36FFCP PHASE2:Mm9::chr16:15895800..15895814,-#_7704a54c83fd557044b54326dd3e9696p@chr16:15895800..15895814, -
4.23e-36FFCP PHASE1:Mm9::chr1:135811991..135811998,-#_7704a54c83fd557044b54326dd3e9696p@chr1:135811991..135811998, -
4.23e-36FFCP PHASE1:Mm9::chr1:72895881..72895885,-#_7704a54c83fd557044b54326dd3e9696p@chr1:72895881..72895885, -
4.23e-36FFCP PHASE1:Mm9::chr11:75244815..75244826,-#_7704a54c83fd557044b54326dd3e9696p@chr11:75244815..75244826, -
4.23e-36FFCP PHASE2:Mm9::chr1:135811991..135811998,-#_7704a54c83fd557044b54326dd3e9696p@chr1:135811991..135811998, -
4.23e-36FFCP PHASE2:Mm9::chr8:73022520..73022524,+#_7704a54c83fd557044b54326dd3e9696p@chr8:73022520..73022524, +
4.23e-36FFCP PHASE1:Mm9::chr1:135811313..135811319,-#_7704a54c83fd557044b54326dd3e9696p@chr1:135811313..135811319, -
6.35e-36FFCP PHASE2:Mm9::chr1:72873148..72873157,+#_0fdc2c9e68a5bcff127fc5c7d4cc76eep@chr1:72873148..72873157, +
6.35e-36FFCP PHASE1:Mm9::chr1:72873148..72873157,+#_0fdc2c9e68a5bcff127fc5c7d4cc76eep@chr1:72873148..72873157, +
1.42e-35FFCP PHASE2:Mm9::chr3:88990698..88990709,+#_383a0d22fa918634dedc9a807fe0124dp@chr3:88990698..88990709, +
1.42e-35FFCP PHASE1:Mm9::chr3:88990698..88990709,+#_383a0d22fa918634dedc9a807fe0124dp@chr3:88990698..88990709, +
2.13e-35FFCP PHASE2:Mm9::chr10:85809948..85809959,+#_aac5b12fac82a7dc85e59eb3664ac06fp@chr10:85809948..85809959, +
2.13e-35FFCP PHASE1:Mm9::chr11:102749254..102749263,-#_aac5b12fac82a7dc85e59eb3664ac06fp@chr11:102749254..102749263, -
2.13e-35FFCP PHASE1:Mm9::chr10:85809948..85809959,+#_aac5b12fac82a7dc85e59eb3664ac06fp@chr10:85809948..85809959, +
2.13e-35FFCP PHASE2:Mm9::chr11:102749254..102749263,-#_aac5b12fac82a7dc85e59eb3664ac06fp@chr11:102749254..102749263, -
3.18e-35FFCP PHASE1:Mm9::chr19:40457627..40457636,-#_d90470887c202652b1335f50bae32f33p9@Sorbs1
3.18e-35FFCP PHASE2:Mm9::chr19:40457627..40457636,-#_d90470887c202652b1335f50bae32f33p9@Sorbs1
4.75e-35FFCP PHASE1:Mm9::chr14:122775017..122775037,+#_ad1ad0b41a20c96ba1cd0c95ef21b11fp@chr14:122775017..122775037, +
4.75e-35FFCP PHASE2:Mm9::chr14:122775017..122775037,+#_ad1ad0b41a20c96ba1cd0c95ef21b11fp@chr14:122775017..122775037, +
1.73e-30FFCP PHASE1:Mm9::chr1:72898728..72898736,+#_05cfb60397221158df62e3f712ec865fp@chr1:72898728..72898736, +
1.73e-30FFCP PHASE2:Mm9::chr1:72895689..72895698,-#_05cfb60397221158df62e3f712ec865fp@chr1:72895689..72895698, -
1.73e-30FFCP PHASE2:Mm9::chr1:135936977..135936983,+#_05cfb60397221158df62e3f712ec865fp@chr1:135936977..135936983, +
1.73e-30FFCP PHASE1:Mm9::chr1:135936966..135936975,-#_05cfb60397221158df62e3f712ec865fp@chr1:135936966..135936975, -
1.73e-30FFCP PHASE1:Mm9::chr1:135811496..135811501,-#_05cfb60397221158df62e3f712ec865fp@chr1:135811496..135811501, -
1.73e-30FFCP PHASE1:Mm9::chr1:72895689..72895698,-#_05cfb60397221158df62e3f712ec865fp@chr1:72895689..72895698, -
1.73e-30FFCP PHASE1:Mm9::chr1:135937446..135937472,+#_05cfb60397221158df62e3f712ec865fp@chr1:135937446..135937472, +
1.73e-30FFCP PHASE1:Mm9::chr1:135936977..135936983,+#_05cfb60397221158df62e3f712ec865fp@chr1:135936977..135936983, +
1.73e-30FFCP PHASE2:Mm9::chr1:135811496..135811501,-#_05cfb60397221158df62e3f712ec865fp@chr1:135811496..135811501, -
1.73e-30FFCP PHASE2:Mm9::chr1:135936966..135936975,-#_05cfb60397221158df62e3f712ec865fp@chr1:135936966..135936975, -
1.73e-30FFCP PHASE2:Mm9::chr1:72898813..72898818,+#_05cfb60397221158df62e3f712ec865fp@chr1:72898813..72898818, +
1.73e-30FFCP PHASE2:Mm9::chr14:70592673..70592699,-#_05cfb60397221158df62e3f712ec865fp@chr14:70592673..70592699, -
1.73e-30FFCP PHASE1:Mm9::chr14:70592673..70592699,-#_05cfb60397221158df62e3f712ec865fp@chr14:70592673..70592699, -
1.73e-30FFCP PHASE2:Mm9::chr1:72898728..72898736,+#_05cfb60397221158df62e3f712ec865fp@chr1:72898728..72898736, +
1.73e-30FFCP PHASE1:Mm9::chr1:72898813..72898818,+#_05cfb60397221158df62e3f712ec865fp@chr1:72898813..72898818, +
1.73e-30FFCP PHASE2:Mm9::chr1:135937446..135937472,+#_05cfb60397221158df62e3f712ec865fp@chr1:135937446..135937472, +
2.43e-30FFCP PHASE2:Mm9::chr1:72898995..72899006,+#_beaa2440457d24f0e9808ef87f85769cp@chr1:72898995..72899006, +
2.43e-30FFCP PHASE1:Mm9::chr11:102754448..102754459,-#_beaa2440457d24f0e9808ef87f85769cp@chr11:102754448..102754459, -
2.43e-30FFCP PHASE1:Mm9::chr1:72898995..72899006,+#_beaa2440457d24f0e9808ef87f85769cp@chr1:72898995..72899006, +
2.43e-30FFCP PHASE2:Mm9::chr1:72895653..72895660,+#_beaa2440457d24f0e9808ef87f85769cp9@Igfbp2
2.43e-30FFCP PHASE1:Mm9::chr19:25684746..25684751,+#_beaa2440457d24f0e9808ef87f85769cp2@Dmrt3
2.43e-30FFCP PHASE2:Mm9::chr19:25684746..25684751,+#_beaa2440457d24f0e9808ef87f85769cp2@Dmrt3
2.43e-30FFCP PHASE2:Mm9::chr11:102754448..102754459,-#_beaa2440457d24f0e9808ef87f85769cp@chr11:102754448..102754459, -
2.43e-30FFCP PHASE1:Mm9::chr1:72895653..72895660,+#_beaa2440457d24f0e9808ef87f85769cp9@Igfbp2
3.41e-30FFCP PHASE2:Mm9::chr1:72898643..72898650,+#_8be087ee2edfe44aa7f11de9a86856b0p@chr1:72898643..72898650, +
3.41e-30FFCP PHASE1:Mm9::chr4:153975408..153975411,+#_8be087ee2edfe44aa7f11de9a86856b0p1@ENSMUST00000132106
3.41e-30FFCP PHASE1:Mm9::chr1:72898643..72898650,+#_8be087ee2edfe44aa7f11de9a86856b0p@chr1:72898643..72898650, +
3.41e-30FFCP PHASE2:Mm9::chr4:153975408..153975411,+#_8be087ee2edfe44aa7f11de9a86856b0p1@ENSMUST00000132106
4.77e-30FFCP PHASE2:Mm9::chr1:174128464..174128474,-#_f240c3fa1ec670772fb7a56359106a60p@chr1:174128464..174128474, -
4.77e-30FFCP PHASE1:Mm9::chr1:174128464..174128474,-#_f240c3fa1ec670772fb7a56359106a60p@chr1:174128464..174128474, -
6.69e-30FFCP PHASE2:Mm9::chr11:7113417..7113424,-#_be5303902f891c1fb1fdcdc787a5ba86p@chr11:7113417..7113424, -
6.69e-30FFCP PHASE1:Mm9::chr11:7113417..7113424,-#_be5303902f891c1fb1fdcdc787a5ba86p@chr11:7113417..7113424, -
1.31e-29FFCP PHASE1:Mm9::chr2:119000878..119000908,-#_660bf134aaba01141d88155a41db0f65p@chr2:119000878..119000908, -
1.31e-29FFCP PHASE1:Mm9::chr14:13179159..13179165,-#_660bf134aaba01141d88155a41db0f65p@chr14:13179159..13179165, -

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