FF:10805-111A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005598 | |||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005598 | |||
|accession_numbers=CAGE;DRX007828;DRR008700;DRZ000125;DRZ001510;DRZ011475;DRZ012860 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057143;DRR062902;DRZ007978 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255 | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0104204,FF:0104205 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!3.08!1200.25!DLX5;;chr13:72441315..72441454,-!p1@DACH1!2.47!563.49!DACH1;;chr14:37131058..37131139,+!p1@PAX9!2.36!229.28!PAX9;;chr5:134369879..134369898,-!p2@PITX1!2.07!115.70!PITX1;;chr5:134369905..134369972,-!p1@PITX1!2.05!168.06!PITX1;;chr11:34642612..34642646,+!p1@EHF!2.01!100.71!EHF;;chr7:96635178..96635181,+!p1@DLX6!1.99!96.70!DLX6;;chr2:16080659..16080685,+!p1@MYCN!1.95!88.04!MYCN;;chr7:96634878..96634900,+!p2@DLX6!1.93!84.66!DLX6;;chr14:33403881..33403924,+!p1@NPAS3!1.93!84.45!NPAS3;;chr17:48072574..48072597,-!p1@DLX3!1.92!82.55!DLX3;;chr22:19748231..19748317,+!p1@TBX1!1.90!78.96!TBX1;;chr8:22550982..22550999,-!p1@EGR3!1.87!197.61!EGR3;;chr13:72441074..72441172,-!p2@DACH1!1.83!66.08!DACH1;;chr11:34645791..34645836,+!p3@EHF!1.80!62.49!EHF;;chr7:96634908..96634923,+!p4@DLX6!1.80!62.49!DLX6;;chr3:114173720..114173794,-!p6@ZBTB20!1.72!51.30!ZBTB20;;chr14:37051798..37051831,-!p1@NKX2-8!1.71!50.04!NKX2-8;;chr20:22565370..22565388,-!p2@FOXA2!1.71!50.04!FOXA2;;chr20:22564895..22564910,-!p1@FOXA2!1.65!43.49!FOXA2;;chr12:54384370..54384382,+!p5@HOXC6!1.61!40.11!HOXC6;;chr8:22550530..22550609,-!p2@EGR3!1.56!35.47!EGR3;;chr17:74137321..74137337,-!p1@FOXJ1!1.56!35.26!FOXJ1;;chr22:19746969..19746987,+!p2@TBX1!1.56!35.05!TBX1;;chr17:48046642..48046667,+!p3@DLX4!1.51!31.25!DLX4;;chr12:54348655..54348693,+!p1@HOXC12!1.49!29.98!HOXC12;;chr3:141103634..141103665,+!p18@ZBTB38!1.49!29.77!ZBTB38;;chr2:63277948..63277974,+!p1@OTX1!1.45!27.02!OTX1;;chr11:44331576..44331650,-!p1@ALX4!1.45!27.02!ALX4;;chr3:114819073..114819100,-!p10@ZBTB20!1.43!26.18!ZBTB20;;chr1:25256756..25256774,-!p1@RUNX3!1.42!47.29!RUNX3;;chr11:44331679..44331702,-!p2@ALX4!1.40!24.28!ALX4;;chr13:73633131..73633149,+!p1@KLF5!1.39!240.26!KLF5;;chr17:48046671..48046697,+!p4@DLX4!1.39!23.43!DLX4;;chr3:114819101..114819121,-!p7@ZBTB20!1.38!23.22!ZBTB20;;chr12:54380036..54380091,+!p4@HOXC10!1.38!22.80!HOXC10;;chr14:37051600..37051611,-!p2@NKX2-8!1.37!22.59!NKX2-8;;chr9:16728047..16728061,-!p8@BNC2!1.35!21.32!BNC2;;chr7:96635277..96635301,+!p7@DLX6!1.34!21.11!DLX6;;chr17:45928521..45928539,-!p1@SP6!1.34!20.90!SP6;;chr5:174151553..174151610,+!p1@MSX2!1.32!33.15!MSX2;;chr15:76629123..76629151,+!p1@ISL2!1.32!22.17!ISL2;;chr9:16728327..16728338,-!p5@BNC2!1.32!19.85!BNC2;;chr19:12163769..12163798,-!p1@ZNF878!1.31!24.91!ZNF878;;chr9:16728161..16728185,-!p4@BNC2!1.31!19.21!BNC2;;chr1:209979467..209979494,-!p1@IRF6!1.30!21.11!IRF6;;chr1:164528687..164528711,+!p6@PBX1!1.27!20.27!PBX1;;chr3:114173654..114173696,-!p12@ZBTB20!1.27!17.73!ZBTB20;;chr8:67525443..67525459,-!p2@MYBL1!1.25!24.70!MYBL1;;chr12:54366894..54366922,+!p2@HOXC11!1.25!16.89!HOXC11;;chr10:63661437..63661465,+!p2@ARID5B!1.22!293.89!ARID5B;;chr17:48046881..48046905,+!p5@DLX4!1.22!15.62!DLX4;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.22!15.41!HOXC5;;chr7:150945754..150945789,-!p2@SMARCD3!1.20!45.39!SMARCD3;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.38!ZNF385A;;chr12:54348702..54348715,+!p2@HOXC12!1.19!14.57!HOXC12;;chr12:54379029..54379057,+!p2@HOXC10!1.19!14.57!HOXC10;;chr5:174151612..174151633,+!p2@MSX2!1.19!14.57!MSX2;;chr14:37051768..37051779,-!p4@NKX2-8!1.19!14.36!NKX2-8;;chr10:70320074..70320106,+!p1@TET1!1.18!28.50!TET1;;chr9:16870710..16870763,-!p1@BNC2!1.18!24.49!BNC2;;chrY:21906594..21906622,-!p1@KDM5D!1.18!14.15!KDM5D;;chr6:21597765..21597779,+!p2@SOX4!1.17!109.57!SOX4;;chr11:34642656..34642667,+!p2@EHF!1.17!13.93!EHF;;chr14:33403648..33403710,+!p3@NPAS3!1.17!13.93!NPAS3;;chr9:96717629..96717644,-!p1@BARX1!1.17!13.72!BARX1;;chr2:63277978..63277995,+!p2@OTX1!1.16!13.51!OTX1;;chr17:7197911..7197964,-!p1@YBX2!1.16!13.30!YBX2;;chr12:54366780..54366791,+!p12@HOXC11!1.15!13.09!HOXC11;;chr12:54366975..54367001,+!p1@HOXC11!1.14!12.88!HOXC11;;chr14:36989940..36989957,-!p2@NKX2-1!1.14!12.88!NKX2-1;;chr3:114173558..114173571,-!p19@ZBTB20!1.14!12.67!ZBTB20;;chr6:21593973..21593988,+!p1@SOX4!1.13!442.73!SOX4;;chr2:85981969..85982019,+!p6@ATOH8!1.12!12.03!ATOH8;;chr3:114819047..114819069,-!p16@ZBTB20!1.11!11.82!ZBTB20;;chr7:96634850..96634874,+!p3@DLX6!1.11!11.82!DLX6;;chr19:38720294..38720348,-!p1@DPF1!1.10!14.36!DPF1;;chr9:16870659..16870675,-!p2@BNC2!1.10!14.15!BNC2;;chr13:72440901..72440968,-!p4@DACH1!1.09!11.40!DACH1;;chr17:48049323..48049330,+!p6@DLX4!1.09!11.40!DLX4;;chr16:67197654..67197716,+!p3@HSF4!1.09!11.19!HSF4;;chr7:96654026..96654061,-!p2@DLX5!1.09!11.19!DLX5;;chr7:86781916..86781963,+!p2@DMTF1!1.06!46.45!DMTF1;;chr12:54694758..54694805,-!p1@NFE2!1.06!12.88!NFE2;;chr3:141103589..141103603,+!p34@ZBTB38!1.06!10.56!ZBTB38;;chr9:16727978..16728010,-!p6@BNC2!1.06!10.56!BNC2;;chr7:96635665..96635685,+!p6@DLX6!1.06!10.56!DLX6;;chr3:193853927..193853944,+!p1@HES1!1.05!335.06!HES1;;chr6:20402102..20402152,+!p1@E2F3!1.05!42.01!E2F3;;chr14:36989913..36989931,-!p6@NKX2-1!1.05!10.35!NKX2-1;;chr14:37051707..37051716,-!p5@NKX2-8!1.05!10.35!NKX2-8;;chr1:2985760..2985774,+!p1@PRDM16!1.05!10.35!PRDM16;;chr11:63684602..63684664,-!p1@RCOR2!1.04!20.06!RCOR2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.03!20.90!ZNF395;;chr2:25475120..25475176,-!p2@DNMT3A!1.00!12.25!DNMT3A;;chr3:114173859..114173873,-!p15@ZBTB20!1.00!9.08!ZBTB20;;chr7:96635448..96635470,+!p5@DLX6!1.00!9.08!DLX6;;chr19:49864746..49864780,-!p2@TEAD2!0.99!12.25!TEAD2;;chr5:176738887..176738934,-!p1@MXD3!0.98!58.90!MXD3;;chr10:63853436..63853442,+!p4@ARID5B!0.98!47.50!ARID5B;;chr14:21994337..21994442,-!p1@SALL2!0.98!24.07!SALL2;;chr3:141105705..141105770,+!p4@ZBTB38!0.98!10.35!ZBTB38;;chr1:35644482..35644486,-!p11@SFPQ!0.98!9.71!SFPQ;;chr2:85980919..85980942,+!p4@ATOH8!0.98!9.08!ATOH8;;chr11:44331735..44331747,-!p3@ALX4!0.98!8.45!ALX4;;chrX:25034067..25034088,-!p1@ARX!0.98!8.45!ARX;;chr9:16727880..16727894,-!p10@BNC2!0.98!8.45!BNC2;;chr6:21597600..21597664,+!p3@SOX4!0.97!14.15!SOX4;;chrX:84499081..84499115,+!p2@ZNF711!0.97!12.46!ZNF711;;chrX:84498989..84499003,+!p1@ZNF711!0.97!11.61!ZNF711;;chr18:42260840..42260860,+!p2@SETBP1!0.97!8.23!SETBP1;;chr12:54332608..54332636,+!p1@HOXC13!0.97!8.23!HOXC13;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.23!HOXC9;;chr15:57210961..57211012,+!p3@TCF12!0.96!26.81!TCF12;;chr1:23857325..23857416,-!p2@E2F2!0.96!9.50!E2F2;;chr3:48282587..48282603,+!p1@ZNF589!0.95!36.31!ZNF589;;chr2:85980768..85980783,+!p10@ATOH8!0.95!7.81!ATOH8;;chr5:153857778..153857794,-!p1@HAND1!0.95!7.81!HAND1;;chr3:141121847..141121868,+!p5@ZBTB38!0.94!12.03!ZBTB38;;chr14:33408072..33408114,+!p2@NPAS3!0.94!9.29!NPAS3;;chr19:35417939..35417963,+!p3@ZNF30!0.93!9.71!ZNF30;;chr7:96635329..96635357,+!p9@DLX6!0.93!7.60!DLX6;;chr12:54332652..54332671,+!p2@HOXC13!0.92!7.39!HOXC13;;chr14:37131404..37131412,+!p15@PAX9!0.92!7.39!PAX9;;chr7:64838786..64838809,+!p2@ZNF92!0.91!42.01!ZNF92;;chr6:21597514..21597578,+!p4@SOX4!0.91!12.25!SOX4;;chr5:134369973..134369984,-!p3@PITX1!0.91!7.18!PITX1;;chr8:49833978..49833996,-!p1@SNAI2!0.90!151.17!SNAI2;;chr19:20959098..20959117,+!p1@ZNF66P!0.90!29.98!ZNF66P;;chr13:74708029..74708077,-!p2@KLF12!0.90!20.69!KLF12;;chr20:6748325..6748352,+!p1@BMP2!0.90!10.35!BMP2;;chr19:21264991..21265026,+!p1@ZNF714!0.89!46.45!ZNF714;;chr16:49698534..49698564,-!p4@ZNF423!0.89!6.76!ZNF423;;chr13:72441259..72441268,-!p8@DACH1!0.89!6.76!DACH1;;chr1:41174988..41175047,+!p4@NFYC!0.88!18.16!NFYC;;chr14:69262789..69262822,-!p2@ZFP36L1!0.88!17.73!ZFP36L1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.88!14.99!SOHLH2;;chr14:33403860..33403874,+!p5@NPAS3!0.88!6.54!NPAS3;;chr2:16080635..16080650,+!p4@MYCN!0.88!6.54!MYCN;;chr2:71127699..71127744,+!p1@VAX2!0.87!13.72!VAX2;;chr6:44355325..44355340,+!p4@CDC5L!0.87!7.60!CDC5L;;chr22:19747040..19747054,+!p3@TBX1!0.87!6.33!TBX1;;chr1:2985726..2985752,+!p2@PRDM16!0.87!6.33!PRDM16;;chr8:116681409..116681431,-!p2@TRPS1!0.86!17.95!TRPS1;;chr11:707063..707088,-!p4@DEAF1!0.86!8.02!DEAF1;;chr12:50479109..50479146,+!p2@SMARCD1!0.85!110.00!SMARCD1;;chr7:150974206..150974255,-!p1@SMARCD3!0.85!40.11!SMARCD3;;chr5:321810..321877,+!p1@AHRR!0.85!20.27!AHRR;;chr2:85980868..85980880,+!p12@ATOH8!0.85!6.12!ATOH8;;chr12:54785054..54785072,-!p4@ZNF385A!0.84!6.76!ZNF385A;;chr8:67525473..67525518,-!p1@MYBL1!0.83!13.93!MYBL1;;chr15:80696666..80696700,+!p4@ARNT2!0.83!5.70!ARNT2;;chr12:54366949..54366973,+!p3@HOXC11!0.83!5.70!HOXC11;;chr12:54694807..54694832,-!p3@NFE2!0.83!5.70!NFE2;;chr20:32274179..32274213,-!p1@E2F1!0.82!40.11!E2F1;;chr6:12008986..12009016,+!p3@HIVEP1!0.81!18.16!HIVEP1;;chr19:23299814..23299844,+!p1@ZNF730!0.81!6.76!ZNF730;;chr10:70320041..70320065,+!p2@TET1!0.81!5.49!TET1;;chr12:54380404..54380433,+!p3@HOXC10!0.81!5.49!HOXC10;;chr13:72441506..72441562,-!p3@DACH1!0.81!5.49!DACH1;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.49!ZFY;;chr3:44596679..44596726,+!p1@ZNF167!0.80!25.12!ZNF167;;chr6:12011943..12012015,+!p2@HIVEP1!0.80!18.16!HIVEP1;;chr12:51566562..51566584,-!p2@TFCP2!0.80!16.05!TFCP2;;chr1:247171347..247171366,-!p2@ZNF695!0.80!10.13!ZNF695;;chr8:73921136..73921151,+!p2@TERF1!0.80!8.23!TERF1;;chr12:57504069..57504090,-!p7@STAT6!0.80!5.28!STAT6;;chr9:16728072..16728081,-!p22@BNC2!0.80!5.28!BNC2;;chr2:239148671..239148686,-!p1@HES6!0.79!20.48!HES6;;chr14:21994449..21994524,-!p2@SALL2!0.79!16.47!SALL2;;chr4:121843985..121844024,-!p2@PRDM5!0.79!12.03!PRDM5;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.79!7.60!TGIF2;;chr8:81398682..81398697,+!p6@ZBTB10!0.79!6.97!ZBTB10;;chr1:114301755..114301796,-!p3@PHTF1!0.79!5.91!PHTF1;;chr17:38219209..38219230,+!p1@THRA!0.78!71.99!THRA;;chr19:19729477..19729542,-!p1@PBX4!0.78!11.40!PBX4;;chr19:56988677..56988729,-!p1@ZNF667!0.78!9.29!ZNF667;;chr5:178322893..178322931,+!p1@ZFP2!0.78!7.60!ZFP2;;chr8:22550700..22550717,-!p4@EGR3!0.78!5.07!EGR3;;chr20:22565185..22565223,-!p3@FOXA2!0.78!5.07!FOXA2;;chr14:33403779..33403793,+!p6@NPAS3!0.78!5.07!NPAS3;;chr14:37131415..37131422,+!p18@PAX9!0.78!5.07!PAX9;;chr19:49865646..49865718,-!p1@TEAD2!0.77!45.60!TEAD2;;chr6:12012536..12012554,+!p4@HIVEP1!0.77!12.46!HIVEP1;;chr7:21467150..21467172,+!p5@SP4!0.77!6.12!SP4;;chr7:96654015..96654018,-!p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| |expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!3.08!1200.25!DLX5;;chr13:72441315..72441454,-!p1@DACH1!2.47!563.49!DACH1;;chr14:37131058..37131139,+!p1@PAX9!2.36!229.28!PAX9;;chr5:134369879..134369898,-!p2@PITX1!2.07!115.70!PITX1;;chr5:134369905..134369972,-!p1@PITX1!2.05!168.06!PITX1;;chr11:34642612..34642646,+!p1@EHF!2.01!100.71!EHF;;chr7:96635178..96635181,+!p1@DLX6!1.99!96.70!DLX6;;chr2:16080659..16080685,+!p1@MYCN!1.95!88.04!MYCN;;chr7:96634878..96634900,+!p2@DLX6!1.93!84.66!DLX6;;chr14:33403881..33403924,+!p1@NPAS3!1.93!84.45!NPAS3;;chr17:48072574..48072597,-!p1@DLX3!1.92!82.55!DLX3;;chr22:19748231..19748317,+!p1@TBX1!1.90!78.96!TBX1;;chr8:22550982..22550999,-!p1@EGR3!1.87!197.61!EGR3;;chr13:72441074..72441172,-!p2@DACH1!1.83!66.08!DACH1;;chr11:34645791..34645836,+!p3@EHF!1.80!62.49!EHF;;chr7:96634908..96634923,+!p4@DLX6!1.80!62.49!DLX6;;chr3:114173720..114173794,-!p6@ZBTB20!1.72!51.30!ZBTB20;;chr14:37051798..37051831,-!p1@NKX2-8!1.71!50.04!NKX2-8;;chr20:22565370..22565388,-!p2@FOXA2!1.71!50.04!FOXA2;;chr20:22564895..22564910,-!p1@FOXA2!1.65!43.49!FOXA2;;chr12:54384370..54384382,+!p5@HOXC6!1.61!40.11!HOXC6;;chr8:22550530..22550609,-!p2@EGR3!1.56!35.47!EGR3;;chr17:74137321..74137337,-!p1@FOXJ1!1.56!35.26!FOXJ1;;chr22:19746969..19746987,+!p2@TBX1!1.56!35.05!TBX1;;chr17:48046642..48046667,+!p3@DLX4!1.51!31.25!DLX4;;chr12:54348655..54348693,+!p1@HOXC12!1.49!29.98!HOXC12;;chr3:141103634..141103665,+!p18@ZBTB38!1.49!29.77!ZBTB38;;chr2:63277948..63277974,+!p1@OTX1!1.45!27.02!OTX1;;chr11:44331576..44331650,-!p1@ALX4!1.45!27.02!ALX4;;chr3:114819073..114819100,-!p10@ZBTB20!1.43!26.18!ZBTB20;;chr1:25256756..25256774,-!p1@RUNX3!1.42!47.29!RUNX3;;chr11:44331679..44331702,-!p2@ALX4!1.40!24.28!ALX4;;chr13:73633131..73633149,+!p1@KLF5!1.39!240.26!KLF5;;chr17:48046671..48046697,+!p4@DLX4!1.39!23.43!DLX4;;chr3:114819101..114819121,-!p7@ZBTB20!1.38!23.22!ZBTB20;;chr12:54380036..54380091,+!p4@HOXC10!1.38!22.80!HOXC10;;chr14:37051600..37051611,-!p2@NKX2-8!1.37!22.59!NKX2-8;;chr9:16728047..16728061,-!p8@BNC2!1.35!21.32!BNC2;;chr7:96635277..96635301,+!p7@DLX6!1.34!21.11!DLX6;;chr17:45928521..45928539,-!p1@SP6!1.34!20.90!SP6;;chr5:174151553..174151610,+!p1@MSX2!1.32!33.15!MSX2;;chr15:76629123..76629151,+!p1@ISL2!1.32!22.17!ISL2;;chr9:16728327..16728338,-!p5@BNC2!1.32!19.85!BNC2;;chr19:12163769..12163798,-!p1@ZNF878!1.31!24.91!ZNF878;;chr9:16728161..16728185,-!p4@BNC2!1.31!19.21!BNC2;;chr1:209979467..209979494,-!p1@IRF6!1.30!21.11!IRF6;;chr1:164528687..164528711,+!p6@PBX1!1.27!20.27!PBX1;;chr3:114173654..114173696,-!p12@ZBTB20!1.27!17.73!ZBTB20;;chr8:67525443..67525459,-!p2@MYBL1!1.25!24.70!MYBL1;;chr12:54366894..54366922,+!p2@HOXC11!1.25!16.89!HOXC11;;chr10:63661437..63661465,+!p2@ARID5B!1.22!293.89!ARID5B;;chr17:48046881..48046905,+!p5@DLX4!1.22!15.62!DLX4;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.22!15.41!HOXC5;;chr7:150945754..150945789,-!p2@SMARCD3!1.20!45.39!SMARCD3;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.38!ZNF385A;;chr12:54348702..54348715,+!p2@HOXC12!1.19!14.57!HOXC12;;chr12:54379029..54379057,+!p2@HOXC10!1.19!14.57!HOXC10;;chr5:174151612..174151633,+!p2@MSX2!1.19!14.57!MSX2;;chr14:37051768..37051779,-!p4@NKX2-8!1.19!14.36!NKX2-8;;chr10:70320074..70320106,+!p1@TET1!1.18!28.50!TET1;;chr9:16870710..16870763,-!p1@BNC2!1.18!24.49!BNC2;;chrY:21906594..21906622,-!p1@KDM5D!1.18!14.15!KDM5D;;chr6:21597765..21597779,+!p2@SOX4!1.17!109.57!SOX4;;chr11:34642656..34642667,+!p2@EHF!1.17!13.93!EHF;;chr14:33403648..33403710,+!p3@NPAS3!1.17!13.93!NPAS3;;chr9:96717629..96717644,-!p1@BARX1!1.17!13.72!BARX1;;chr2:63277978..63277995,+!p2@OTX1!1.16!13.51!OTX1;;chr17:7197911..7197964,-!p1@YBX2!1.16!13.30!YBX2;;chr12:54366780..54366791,+!p12@HOXC11!1.15!13.09!HOXC11;;chr12:54366975..54367001,+!p1@HOXC11!1.14!12.88!HOXC11;;chr14:36989940..36989957,-!p2@NKX2-1!1.14!12.88!NKX2-1;;chr3:114173558..114173571,-!p19@ZBTB20!1.14!12.67!ZBTB20;;chr6:21593973..21593988,+!p1@SOX4!1.13!442.73!SOX4;;chr2:85981969..85982019,+!p6@ATOH8!1.12!12.03!ATOH8;;chr3:114819047..114819069,-!p16@ZBTB20!1.11!11.82!ZBTB20;;chr7:96634850..96634874,+!p3@DLX6!1.11!11.82!DLX6;;chr19:38720294..38720348,-!p1@DPF1!1.10!14.36!DPF1;;chr9:16870659..16870675,-!p2@BNC2!1.10!14.15!BNC2;;chr13:72440901..72440968,-!p4@DACH1!1.09!11.40!DACH1;;chr17:48049323..48049330,+!p6@DLX4!1.09!11.40!DLX4;;chr16:67197654..67197716,+!p3@HSF4!1.09!11.19!HSF4;;chr7:96654026..96654061,-!p2@DLX5!1.09!11.19!DLX5;;chr7:86781916..86781963,+!p2@DMTF1!1.06!46.45!DMTF1;;chr12:54694758..54694805,-!p1@NFE2!1.06!12.88!NFE2;;chr3:141103589..141103603,+!p34@ZBTB38!1.06!10.56!ZBTB38;;chr9:16727978..16728010,-!p6@BNC2!1.06!10.56!BNC2;;chr7:96635665..96635685,+!p6@DLX6!1.06!10.56!DLX6;;chr3:193853927..193853944,+!p1@HES1!1.05!335.06!HES1;;chr6:20402102..20402152,+!p1@E2F3!1.05!42.01!E2F3;;chr14:36989913..36989931,-!p6@NKX2-1!1.05!10.35!NKX2-1;;chr14:37051707..37051716,-!p5@NKX2-8!1.05!10.35!NKX2-8;;chr1:2985760..2985774,+!p1@PRDM16!1.05!10.35!PRDM16;;chr11:63684602..63684664,-!p1@RCOR2!1.04!20.06!RCOR2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.03!20.90!ZNF395;;chr2:25475120..25475176,-!p2@DNMT3A!1.00!12.25!DNMT3A;;chr3:114173859..114173873,-!p15@ZBTB20!1.00!9.08!ZBTB20;;chr7:96635448..96635470,+!p5@DLX6!1.00!9.08!DLX6;;chr19:49864746..49864780,-!p2@TEAD2!0.99!12.25!TEAD2;;chr5:176738887..176738934,-!p1@MXD3!0.98!58.90!MXD3;;chr10:63853436..63853442,+!p4@ARID5B!0.98!47.50!ARID5B;;chr14:21994337..21994442,-!p1@SALL2!0.98!24.07!SALL2;;chr3:141105705..141105770,+!p4@ZBTB38!0.98!10.35!ZBTB38;;chr1:35644482..35644486,-!p11@SFPQ!0.98!9.71!SFPQ;;chr2:85980919..85980942,+!p4@ATOH8!0.98!9.08!ATOH8;;chr11:44331735..44331747,-!p3@ALX4!0.98!8.45!ALX4;;chrX:25034067..25034088,-!p1@ARX!0.98!8.45!ARX;;chr9:16727880..16727894,-!p10@BNC2!0.98!8.45!BNC2;;chr6:21597600..21597664,+!p3@SOX4!0.97!14.15!SOX4;;chrX:84499081..84499115,+!p2@ZNF711!0.97!12.46!ZNF711;;chrX:84498989..84499003,+!p1@ZNF711!0.97!11.61!ZNF711;;chr18:42260840..42260860,+!p2@SETBP1!0.97!8.23!SETBP1;;chr12:54332608..54332636,+!p1@HOXC13!0.97!8.23!HOXC13;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.23!HOXC9;;chr15:57210961..57211012,+!p3@TCF12!0.96!26.81!TCF12;;chr1:23857325..23857416,-!p2@E2F2!0.96!9.50!E2F2;;chr3:48282587..48282603,+!p1@ZNF589!0.95!36.31!ZNF589;;chr2:85980768..85980783,+!p10@ATOH8!0.95!7.81!ATOH8;;chr5:153857778..153857794,-!p1@HAND1!0.95!7.81!HAND1;;chr3:141121847..141121868,+!p5@ZBTB38!0.94!12.03!ZBTB38;;chr14:33408072..33408114,+!p2@NPAS3!0.94!9.29!NPAS3;;chr19:35417939..35417963,+!p3@ZNF30!0.93!9.71!ZNF30;;chr7:96635329..96635357,+!p9@DLX6!0.93!7.60!DLX6;;chr12:54332652..54332671,+!p2@HOXC13!0.92!7.39!HOXC13;;chr14:37131404..37131412,+!p15@PAX9!0.92!7.39!PAX9;;chr7:64838786..64838809,+!p2@ZNF92!0.91!42.01!ZNF92;;chr6:21597514..21597578,+!p4@SOX4!0.91!12.25!SOX4;;chr5:134369973..134369984,-!p3@PITX1!0.91!7.18!PITX1;;chr8:49833978..49833996,-!p1@SNAI2!0.90!151.17!SNAI2;;chr19:20959098..20959117,+!p1@ZNF66P!0.90!29.98!ZNF66P;;chr13:74708029..74708077,-!p2@KLF12!0.90!20.69!KLF12;;chr20:6748325..6748352,+!p1@BMP2!0.90!10.35!BMP2;;chr19:21264991..21265026,+!p1@ZNF714!0.89!46.45!ZNF714;;chr16:49698534..49698564,-!p4@ZNF423!0.89!6.76!ZNF423;;chr13:72441259..72441268,-!p8@DACH1!0.89!6.76!DACH1;;chr1:41174988..41175047,+!p4@NFYC!0.88!18.16!NFYC;;chr14:69262789..69262822,-!p2@ZFP36L1!0.88!17.73!ZFP36L1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.88!14.99!SOHLH2;;chr14:33403860..33403874,+!p5@NPAS3!0.88!6.54!NPAS3;;chr2:16080635..16080650,+!p4@MYCN!0.88!6.54!MYCN;;chr2:71127699..71127744,+!p1@VAX2!0.87!13.72!VAX2;;chr6:44355325..44355340,+!p4@CDC5L!0.87!7.60!CDC5L;;chr22:19747040..19747054,+!p3@TBX1!0.87!6.33!TBX1;;chr1:2985726..2985752,+!p2@PRDM16!0.87!6.33!PRDM16;;chr8:116681409..116681431,-!p2@TRPS1!0.86!17.95!TRPS1;;chr11:707063..707088,-!p4@DEAF1!0.86!8.02!DEAF1;;chr12:50479109..50479146,+!p2@SMARCD1!0.85!110.00!SMARCD1;;chr7:150974206..150974255,-!p1@SMARCD3!0.85!40.11!SMARCD3;;chr5:321810..321877,+!p1@AHRR!0.85!20.27!AHRR;;chr2:85980868..85980880,+!p12@ATOH8!0.85!6.12!ATOH8;;chr12:54785054..54785072,-!p4@ZNF385A!0.84!6.76!ZNF385A;;chr8:67525473..67525518,-!p1@MYBL1!0.83!13.93!MYBL1;;chr15:80696666..80696700,+!p4@ARNT2!0.83!5.70!ARNT2;;chr12:54366949..54366973,+!p3@HOXC11!0.83!5.70!HOXC11;;chr12:54694807..54694832,-!p3@NFE2!0.83!5.70!NFE2;;chr20:32274179..32274213,-!p1@E2F1!0.82!40.11!E2F1;;chr6:12008986..12009016,+!p3@HIVEP1!0.81!18.16!HIVEP1;;chr19:23299814..23299844,+!p1@ZNF730!0.81!6.76!ZNF730;;chr10:70320041..70320065,+!p2@TET1!0.81!5.49!TET1;;chr12:54380404..54380433,+!p3@HOXC10!0.81!5.49!HOXC10;;chr13:72441506..72441562,-!p3@DACH1!0.81!5.49!DACH1;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.49!ZFY;;chr3:44596679..44596726,+!p1@ZNF167!0.80!25.12!ZNF167;;chr6:12011943..12012015,+!p2@HIVEP1!0.80!18.16!HIVEP1;;chr12:51566562..51566584,-!p2@TFCP2!0.80!16.05!TFCP2;;chr1:247171347..247171366,-!p2@ZNF695!0.80!10.13!ZNF695;;chr8:73921136..73921151,+!p2@TERF1!0.80!8.23!TERF1;;chr12:57504069..57504090,-!p7@STAT6!0.80!5.28!STAT6;;chr9:16728072..16728081,-!p22@BNC2!0.80!5.28!BNC2;;chr2:239148671..239148686,-!p1@HES6!0.79!20.48!HES6;;chr14:21994449..21994524,-!p2@SALL2!0.79!16.47!SALL2;;chr4:121843985..121844024,-!p2@PRDM5!0.79!12.03!PRDM5;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.79!7.60!TGIF2;;chr8:81398682..81398697,+!p6@ZBTB10!0.79!6.97!ZBTB10;;chr1:114301755..114301796,-!p3@PHTF1!0.79!5.91!PHTF1;;chr17:38219209..38219230,+!p1@THRA!0.78!71.99!THRA;;chr19:19729477..19729542,-!p1@PBX4!0.78!11.40!PBX4;;chr19:56988677..56988729,-!p1@ZNF667!0.78!9.29!ZNF667;;chr5:178322893..178322931,+!p1@ZFP2!0.78!7.60!ZFP2;;chr8:22550700..22550717,-!p4@EGR3!0.78!5.07!EGR3;;chr20:22565185..22565223,-!p3@FOXA2!0.78!5.07!FOXA2;;chr14:33403779..33403793,+!p6@NPAS3!0.78!5.07!NPAS3;;chr14:37131415..37131422,+!p18@PAX9!0.78!5.07!PAX9;;chr19:49865646..49865718,-!p1@TEAD2!0.77!45.60!TEAD2;;chr6:12012536..12012554,+!p4@HIVEP1!0.77!12.46!HIVEP1;;chr7:21467150..21467172,+!p5@SP4!0.77!6.12!SP4;;chr7:96654015..96654018,-!p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| ||
Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aRPMI%25202650.CNhs11889.10805-111A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10805-111A4 | |id=FF:10805-111A4 | ||
|is_a= | |is_a=EFO:0002091;;FF:0000210;;FF:0104205 | ||
|is_obsolete= | |||
|library_id=CNhs11889 | |||
|library_id_phase_based=2:CNhs11889 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10805 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10805 | |||
|name=anaplastic squamous cell carcinoma cell line:RPMI 2650 | |name=anaplastic squamous cell carcinoma cell line:RPMI 2650 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11889,LSID830,release010,COMPLETED | |profile_hcage=CNhs11889,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 56: | Line 78: | ||
|rna_tube_id=111A4 | |rna_tube_id=111A4 | ||
|rna_weight_ug=18.69264 | |rna_weight_ug=18.69264 | ||
|rnaseq_library_id=RDhi10086 | |||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb9058 | |sample_cell_catalog=jcrb9058 | ||
|sample_cell_line=RPMI 2650 | |sample_cell_line=RPMI 2650 | ||
Line 77: | Line 101: | ||
|sample_tissue=nasal septum | |sample_tissue=nasal septum | ||
|top_motifs=FOXP1:4.11842010193;TOPORS:3.40375240093;PITX1..3:3.25800569276;TEF:2.8818015384;LHX3,4:2.87309973186;ALX1:2.634358848;VSX1,2:2.58407779138;FOXD3:2.40548637408;RBPJ:2.31761564175;PAX4:2.30697073792;NANOG:2.25646352597;POU1F1:2.05184804805;ZBTB16:2.03243559428;PAX8:1.99972673991;HOX{A4,D4}:1.79451458658;CRX:1.73350365241;AIRE:1.7281959369;CDC5L:1.6471261871;T:1.64254143166;TFDP1:1.54301254132;NRF1:1.53669443744;POU6F1:1.52553442166;NKX2-3_NKX2-5:1.50175530244;NFY{A,B,C}:1.48675232484;ZNF143:1.48329182483;E2F1..5:1.47586456232;RFX1:1.4680803843;CDX1,2,4:1.44659212366;HOX{A6,A7,B6,B7}:1.44095516048;NKX6-1,2:1.41216472374;LEF1_TCF7_TCF7L1,2:1.38249551507;YY1:1.29987527358;ADNP_IRX_SIX_ZHX:1.21905968944;SOX5:1.20816327034;HMGA1,2:1.18102489076;GFI1:1.16250655399;SOX17:1.11707997202;ONECUT1,2:1.10805403653;FOXL1:1.09568435767;BREu{core}:1.01490739487;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.963263097663;ATF4:0.956459752781;SP1:0.907704830184;IKZF2:0.846773059041;POU2F1..3:0.843430503408;RXR{A,B,G}:0.813699236197;PDX1:0.804282601041;FOXQ1:0.799229911909;ZNF384:0.773012967668;RFX2..5_RFXANK_RFXAP:0.769289825757;CREB1:0.767343545278;EVI1:0.719941355963;STAT5{A,B}:0.69935102256;SOX{8,9,10}:0.677144620853;PATZ1:0.662410924725;RORA:0.644667179178;FOXA2:0.637883419917;BPTF:0.62353717341;NKX3-1:0.598549869703;RREB1:0.598068927426;PRRX1,2:0.591093989782;PBX1:0.585736717927;HOX{A5,B5}:0.568452385151;SOX2:0.565872397434;MED-1{core}:0.541307670544;FOXM1:0.519277729699;CUX2:0.514361263311;SNAI1..3:0.511672835303;ZFP161:0.504854640027;ZIC1..3:0.487488979912;ELK1,4_GABP{A,B1}:0.467047884652;FOX{I1,J2}:0.401947404702;MTE{core}:0.354057051861;ZEB1:0.337632014318;OCT4_SOX2{dimer}:0.296687818016;FOX{F1,F2,J1}:0.277366077433;STAT1,3:0.260655240115;NKX2-2,8:0.244244578389;TFAP2B:0.237505388912;FOXN1:0.231754029764;ARID5B:0.22343503755;HBP1_HMGB_SSRP1_UBTF:0.215692492816;POU3F1..4:0.200331194545;TP53:0.193178116232;GZF1:0.189355617167;NR5A1,2:0.170683996675;MYB:0.151246896974;FOX{D1,D2}:0.114871981227;XCPE1{core}:0.111742246791;PAX3,7:0.110002877583;MEF2{A,B,C,D}:0.102037111057;HIC1:0.0954917778822;HIF1A:0.0446179514399;NKX2-1,4:0.0348263596563;POU5F1:0.0200717792611;PAX5:0.00212449018296;GATA6:0.00133844488732;HNF1A:-0.0203098910053;HOXA9_MEIS1:-0.03585076549;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.06758325868;ZBTB6:-0.105836198915;KLF4:-0.113241077996;MYBL2:-0.119953380849;bHLH_family:-0.153927205951;FOXO1,3,4:-0.159736094587;PRDM1:-0.184498344431;REST:-0.21690515052;ATF2:-0.218833430877;NFIL3:-0.22904512232;AHR_ARNT_ARNT2:-0.230675413624;TEAD1:-0.239095376064;FOXP3:-0.246250091972;ATF5_CREB3:-0.257367311116;ESR1:-0.285453223468;GTF2A1,2:-0.333464485527;EN1,2:-0.372785306103;GTF2I:-0.378323078457;MZF1:-0.405291070899;DBP:-0.427843313539;EGR1..3:-0.434204191658;HNF4A_NR2F1,2:-0.434610388012;LMO2:-0.435014049392;NR3C1:-0.450351731149;MAZ:-0.467328610742;MTF1:-0.4794014387;AR:-0.500738057543;TFAP2{A,C}:-0.522626216133;TAL1_TCF{3,4,12}:-0.5976349174;MYFfamily:-0.642594156656;NKX3-2:-0.65317343944;PAX6:-0.65532919323;TLX2:-0.660515224305;DMAP1_NCOR{1,2}_SMARC:-0.662816284834;SPIB:-0.665324801838;IRF7:-0.667070165763;NR1H4:-0.678525898011;BACH2:-0.697731673771;FOS_FOS{B,L1}_JUN{B,D}:-0.698468676298;TBP:-0.702943935786;RUNX1..3:-0.708265447347;RXRA_VDR{dimer}:-0.731727578445;TLX1..3_NFIC{dimer}:-0.76457355985;ESRRA:-0.805020906702;UFEwm:-0.815980888595;GATA4:-0.819003633549;NFKB1_REL_RELA:-0.824099995369;CEBPA,B_DDIT3:-0.871059463656;SREBF1,2:-0.87371979939;NFE2:-0.875869958492;MYOD1:-0.888081359638;FOSL2:-0.944333870443;TGIF1:-0.981787009252;GFI1B:-0.983321516734;NANOG{mouse}:-1.01075796841;PAX1,9:-1.01098848222;HLF:-1.0124159014;HAND1,2:-1.02289704931;ALX4:-1.03960948923;JUN:-1.07787735339;ETS1,2:-1.09628732038;SPI1:-1.1193917635;ELF1,2,4:-1.12575238241;IRF1,2:-1.1538009889;NHLH1,2:-1.19247593782;IKZF1:-1.22335337818;PPARG:-1.23050827597;STAT2,4,6:-1.24477357736;SRF:-1.26354565983;GCM1,2:-1.26869065958;ZNF148:-1.30116944144;TBX4,5:-1.31959467837;EBF1:-1.32916001726;PAX2:-1.39119514008;ZNF238:-1.39386407284;XBP1:-1.41727849119;ZNF423:-1.43252165189;TFAP4:-1.5541636813;TFCP2:-1.67248968081;NFE2L2:-1.6751707128;GLI1..3:-1.68912047709;HSF1,2:-1.7388100045;NFIX:-1.98002982368;NR6A1:-1.98738183396;HES1:-1.99653453537;ATF6:-2.02324130864;NFATC1..3:-2.12163030436;SMAD1..7,9:-2.25465394368;SPZ1:-2.30214121573;MAFB:-2.32330023077;HMX1:-2.37097379298;EP300:-2.43021600498;NFE2L1:-2.71913215955 | |top_motifs=FOXP1:4.11842010193;TOPORS:3.40375240093;PITX1..3:3.25800569276;TEF:2.8818015384;LHX3,4:2.87309973186;ALX1:2.634358848;VSX1,2:2.58407779138;FOXD3:2.40548637408;RBPJ:2.31761564175;PAX4:2.30697073792;NANOG:2.25646352597;POU1F1:2.05184804805;ZBTB16:2.03243559428;PAX8:1.99972673991;HOX{A4,D4}:1.79451458658;CRX:1.73350365241;AIRE:1.7281959369;CDC5L:1.6471261871;T:1.64254143166;TFDP1:1.54301254132;NRF1:1.53669443744;POU6F1:1.52553442166;NKX2-3_NKX2-5:1.50175530244;NFY{A,B,C}:1.48675232484;ZNF143:1.48329182483;E2F1..5:1.47586456232;RFX1:1.4680803843;CDX1,2,4:1.44659212366;HOX{A6,A7,B6,B7}:1.44095516048;NKX6-1,2:1.41216472374;LEF1_TCF7_TCF7L1,2:1.38249551507;YY1:1.29987527358;ADNP_IRX_SIX_ZHX:1.21905968944;SOX5:1.20816327034;HMGA1,2:1.18102489076;GFI1:1.16250655399;SOX17:1.11707997202;ONECUT1,2:1.10805403653;FOXL1:1.09568435767;BREu{core}:1.01490739487;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.963263097663;ATF4:0.956459752781;SP1:0.907704830184;IKZF2:0.846773059041;POU2F1..3:0.843430503408;RXR{A,B,G}:0.813699236197;PDX1:0.804282601041;FOXQ1:0.799229911909;ZNF384:0.773012967668;RFX2..5_RFXANK_RFXAP:0.769289825757;CREB1:0.767343545278;EVI1:0.719941355963;STAT5{A,B}:0.69935102256;SOX{8,9,10}:0.677144620853;PATZ1:0.662410924725;RORA:0.644667179178;FOXA2:0.637883419917;BPTF:0.62353717341;NKX3-1:0.598549869703;RREB1:0.598068927426;PRRX1,2:0.591093989782;PBX1:0.585736717927;HOX{A5,B5}:0.568452385151;SOX2:0.565872397434;MED-1{core}:0.541307670544;FOXM1:0.519277729699;CUX2:0.514361263311;SNAI1..3:0.511672835303;ZFP161:0.504854640027;ZIC1..3:0.487488979912;ELK1,4_GABP{A,B1}:0.467047884652;FOX{I1,J2}:0.401947404702;MTE{core}:0.354057051861;ZEB1:0.337632014318;OCT4_SOX2{dimer}:0.296687818016;FOX{F1,F2,J1}:0.277366077433;STAT1,3:0.260655240115;NKX2-2,8:0.244244578389;TFAP2B:0.237505388912;FOXN1:0.231754029764;ARID5B:0.22343503755;HBP1_HMGB_SSRP1_UBTF:0.215692492816;POU3F1..4:0.200331194545;TP53:0.193178116232;GZF1:0.189355617167;NR5A1,2:0.170683996675;MYB:0.151246896974;FOX{D1,D2}:0.114871981227;XCPE1{core}:0.111742246791;PAX3,7:0.110002877583;MEF2{A,B,C,D}:0.102037111057;HIC1:0.0954917778822;HIF1A:0.0446179514399;NKX2-1,4:0.0348263596563;POU5F1:0.0200717792611;PAX5:0.00212449018296;GATA6:0.00133844488732;HNF1A:-0.0203098910053;HOXA9_MEIS1:-0.03585076549;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.06758325868;ZBTB6:-0.105836198915;KLF4:-0.113241077996;MYBL2:-0.119953380849;bHLH_family:-0.153927205951;FOXO1,3,4:-0.159736094587;PRDM1:-0.184498344431;REST:-0.21690515052;ATF2:-0.218833430877;NFIL3:-0.22904512232;AHR_ARNT_ARNT2:-0.230675413624;TEAD1:-0.239095376064;FOXP3:-0.246250091972;ATF5_CREB3:-0.257367311116;ESR1:-0.285453223468;GTF2A1,2:-0.333464485527;EN1,2:-0.372785306103;GTF2I:-0.378323078457;MZF1:-0.405291070899;DBP:-0.427843313539;EGR1..3:-0.434204191658;HNF4A_NR2F1,2:-0.434610388012;LMO2:-0.435014049392;NR3C1:-0.450351731149;MAZ:-0.467328610742;MTF1:-0.4794014387;AR:-0.500738057543;TFAP2{A,C}:-0.522626216133;TAL1_TCF{3,4,12}:-0.5976349174;MYFfamily:-0.642594156656;NKX3-2:-0.65317343944;PAX6:-0.65532919323;TLX2:-0.660515224305;DMAP1_NCOR{1,2}_SMARC:-0.662816284834;SPIB:-0.665324801838;IRF7:-0.667070165763;NR1H4:-0.678525898011;BACH2:-0.697731673771;FOS_FOS{B,L1}_JUN{B,D}:-0.698468676298;TBP:-0.702943935786;RUNX1..3:-0.708265447347;RXRA_VDR{dimer}:-0.731727578445;TLX1..3_NFIC{dimer}:-0.76457355985;ESRRA:-0.805020906702;UFEwm:-0.815980888595;GATA4:-0.819003633549;NFKB1_REL_RELA:-0.824099995369;CEBPA,B_DDIT3:-0.871059463656;SREBF1,2:-0.87371979939;NFE2:-0.875869958492;MYOD1:-0.888081359638;FOSL2:-0.944333870443;TGIF1:-0.981787009252;GFI1B:-0.983321516734;NANOG{mouse}:-1.01075796841;PAX1,9:-1.01098848222;HLF:-1.0124159014;HAND1,2:-1.02289704931;ALX4:-1.03960948923;JUN:-1.07787735339;ETS1,2:-1.09628732038;SPI1:-1.1193917635;ELF1,2,4:-1.12575238241;IRF1,2:-1.1538009889;NHLH1,2:-1.19247593782;IKZF1:-1.22335337818;PPARG:-1.23050827597;STAT2,4,6:-1.24477357736;SRF:-1.26354565983;GCM1,2:-1.26869065958;ZNF148:-1.30116944144;TBX4,5:-1.31959467837;EBF1:-1.32916001726;PAX2:-1.39119514008;ZNF238:-1.39386407284;XBP1:-1.41727849119;ZNF423:-1.43252165189;TFAP4:-1.5541636813;TFCP2:-1.67248968081;NFE2L2:-1.6751707128;GLI1..3:-1.68912047709;HSF1,2:-1.7388100045;NFIX:-1.98002982368;NR6A1:-1.98738183396;HES1:-1.99653453537;ATF6:-2.02324130864;NFATC1..3:-2.12163030436;SMAD1..7,9:-2.25465394368;SPZ1:-2.30214121573;MAFB:-2.32330023077;HMX1:-2.37097379298;EP300:-2.43021600498;NFE2L1:-2.71913215955 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10805-111A4;search_select_hide=table117:FF:10805-111A4 | |||
}} | }} |
Latest revision as of 15:05, 3 June 2020
Name: | anaplastic squamous cell carcinoma cell line:RPMI 2650 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11889 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11889
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11889
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.517 |
10 | 10 | 0.53 |
100 | 100 | 0.454 |
101 | 101 | 0.181 |
102 | 102 | 0.583 |
103 | 103 | 0.00451 |
104 | 104 | 0.638 |
105 | 105 | 0.933 |
106 | 106 | 0.00118 |
107 | 107 | 0.048 |
108 | 108 | 0.464 |
109 | 109 | 0.208 |
11 | 11 | 0.398 |
110 | 110 | 0.821 |
111 | 111 | 0.847 |
112 | 112 | 0.283 |
113 | 113 | 0.348 |
114 | 114 | 0.063 |
115 | 115 | 0.138 |
116 | 116 | 0.793 |
117 | 117 | 0.91 |
118 | 118 | 0.624 |
119 | 119 | 0.756 |
12 | 12 | 0.876 |
120 | 120 | 0.273 |
121 | 121 | 0.851 |
122 | 122 | 0.34 |
123 | 123 | 0.00212 |
124 | 124 | 0.379 |
125 | 125 | 0.94 |
126 | 126 | 0.14 |
127 | 127 | 0.0751 |
128 | 128 | 0.146 |
129 | 129 | 0.286 |
13 | 13 | 0.799 |
130 | 130 | 0.481 |
131 | 131 | 0.356 |
132 | 132 | 0.883 |
133 | 133 | 0.46 |
134 | 134 | 0.415 |
135 | 135 | 0.0576 |
136 | 136 | 0.444 |
137 | 137 | 0.572 |
138 | 138 | 0.452 |
139 | 139 | 0.774 |
14 | 14 | 0.861 |
140 | 140 | 0.391 |
141 | 141 | 0.799 |
142 | 142 | 0.431 |
143 | 143 | 4.71542e-4 |
144 | 144 | 0.912 |
145 | 145 | 0.89 |
146 | 146 | 0.497 |
147 | 147 | 0.482 |
148 | 148 | 0.00396 |
149 | 149 | 0.274 |
15 | 15 | 0.277 |
150 | 150 | 0.416 |
151 | 151 | 0.591 |
152 | 152 | 0.0368 |
153 | 153 | 0.935 |
154 | 154 | 0.928 |
155 | 155 | 0.406 |
156 | 156 | 0.492 |
157 | 157 | 0.466 |
158 | 158 | 0.946 |
159 | 159 | 0.47 |
16 | 16 | 0.236 |
160 | 160 | 0.427 |
161 | 161 | 0.7 |
162 | 162 | 0.42 |
163 | 163 | 0.149 |
164 | 164 | 0.81 |
165 | 165 | 0.233 |
166 | 166 | 0.9 |
167 | 167 | 0.238 |
168 | 168 | 0.0526 |
169 | 169 | 0.152 |
17 | 17 | 0.236 |
18 | 18 | 0.0526 |
19 | 19 | 0.105 |
2 | 2 | 0.199 |
20 | 20 | 0.173 |
21 | 21 | 0.894 |
22 | 22 | 0.125 |
23 | 23 | 0.00423 |
24 | 24 | 0.159 |
25 | 25 | 0.546 |
26 | 26 | 0.541 |
27 | 27 | 0.121 |
28 | 28 | 0.686 |
29 | 29 | 0.507 |
3 | 3 | 0.526 |
30 | 30 | 0.29 |
31 | 31 | 0.671 |
32 | 32 | 0.00921 |
33 | 33 | 0.385 |
34 | 34 | 0.304 |
35 | 35 | 0.662 |
36 | 36 | 0.577 |
37 | 37 | 0.16 |
38 | 38 | 0.673 |
39 | 39 | 0.323 |
4 | 4 | 0.726 |
40 | 40 | 0.851 |
41 | 41 | 0.0152 |
42 | 42 | 0.867 |
43 | 43 | 0.114 |
44 | 44 | 0.25 |
45 | 45 | 0.254 |
46 | 46 | 0.184 |
47 | 47 | 0.791 |
48 | 48 | 0.956 |
49 | 49 | 0.536 |
5 | 5 | 0.192 |
50 | 50 | 0.743 |
51 | 51 | 0.429 |
52 | 52 | 0.245 |
53 | 53 | 0.597 |
54 | 54 | 0.34 |
55 | 55 | 0.768 |
56 | 56 | 0.798 |
57 | 57 | 0.453 |
58 | 58 | 0.186 |
59 | 59 | 0.00433 |
6 | 6 | 0.362 |
60 | 60 | 0.0486 |
61 | 61 | 0.833 |
62 | 62 | 0.0399 |
63 | 63 | 0.358 |
64 | 64 | 0.595 |
65 | 65 | 0.152 |
66 | 66 | 0.469 |
67 | 67 | 0.695 |
68 | 68 | 0.849 |
69 | 69 | 0.988 |
7 | 7 | 0.643 |
70 | 70 | 0.321 |
71 | 71 | 0.137 |
72 | 72 | 0.204 |
73 | 73 | 0.137 |
74 | 74 | 0.0272 |
75 | 75 | 0.625 |
76 | 76 | 0.541 |
77 | 77 | 0.0752 |
78 | 78 | 0.542 |
79 | 79 | 0.0431 |
8 | 8 | 0.462 |
80 | 80 | 0.0598 |
81 | 81 | 0.629 |
82 | 82 | 0.151 |
83 | 83 | 0.313 |
84 | 84 | 0.341 |
85 | 85 | 0.0116 |
86 | 86 | 0.466 |
87 | 87 | 0.238 |
88 | 88 | 0.977 |
89 | 89 | 0.064 |
9 | 9 | 0.058 |
90 | 90 | 0.949 |
91 | 91 | 0.536 |
92 | 92 | 0.248 |
93 | 93 | 0.0965 |
94 | 94 | 0.385 |
95 | 95 | 0.514 |
96 | 96 | 0.579 |
97 | 97 | 0.778 |
98 | 98 | 0.657 |
99 | 99 | 0.626 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11889
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104205 RPMI-2650 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0104204 (nasal squamous cell carcinoma cell line sample)
0104205 (RPMI-2650 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA