FF:11548-120B9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005913 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005913 | ||
|accession_numbers=CAGE;DRX008345;DRR009217;DRZ000642;DRZ002027;DRZ011992;DRZ013377 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037094;DRR041460;DRZ007102 | |||
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569,CL:0002568 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000094,FF:0000001,FF:0000095 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.55!ZBED1;;chr10:64576105..64576133,-!p1@EGR2!1.54!67.74!EGR2;;chr4:174451370..174451387,-!p1@HAND2!1.53!32.71!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.47!28.57!HOXC5;;chr16:86544113..86544145,+!p1@FOXF1!1.46!34.13!FOXF1;;chr4:111558135..111558198,-!p2@PITX2!1.34!20.94!PITX2;;chr12:66218836..66218888,+!p1@HMGA2!1.33!184.86!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.32!61.15!GATA6;;chr12:54402745..54402788,+!p1@HOXC8!1.30!18.87!HOXC8;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.52!CREB3L1;;chr20:50179368..50179392,-!p2@NFATC2!1.27!22.62!NFATC2;;chr15:83953397..83953425,-!p1@BNC1!1.27!20.17!BNC1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!77.18!HMGA2;;chr5:142780189..142780223,-!p6@NR3C1!1.25!16.68!NR3C1;;chr11:61520075..61520136,+!p1@C11orf9!1.22!32.45!C11orf9;;chr18:19749386..19749404,+!p2@GATA6!1.15!18.87!GATA6;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.54!HOXC9;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.55!CREB3L1;;chr12:26277817..26277863,-!p2@BHLHE41!1.11!16.03!BHLHE41;;chr12:66218904..66218913,+!p11@HMGA2!1.10!11.63!HMGA2;;chr7:1577899..1577943,+!p3@MAFK!1.10!11.63!MAFK;;chr19:45971246..45971265,+!p1@FOSB!1.09!209.16!FOSB;;chr21:36421535..36421610,-!p2@RUNX1!1.09!40.33!RUNX1;;chr6:134210243..134210257,+!p1@TCF21!1.05!10.21!TCF21;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.22!HOXB7;;chr12:66218255..66218304,+!p3@HMGA2!1.00!24.69!HMGA2;;chr18:53068911..53068935,-!p4@TCF4!0.99!9.95!TCF4;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.38!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.98!13.83!PAWR;;chr12:66218923..66218934,+!p14@HMGA2!0.98!8.53!HMGA2;;chr3:5021268..5021282,+!p4@BHLHE40!0.97!17.45!BHLHE40;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.27!HOXB6;;chr5:142780237..142780261,-!p7@NR3C1!0.96!8.14!NR3C1;;chr6:1312325..1312340,+!p1@FOXQ1!0.95!13.19!FOXQ1;;chr4:174450089..174450153,-!p2@HAND2!0.95!8.01!HAND2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.95!7.89!SEBOX;;chr3:25469724..25469773,+!p1@RARB!0.94!11.38!RARB;;chr4:111544219..111544240,-!p1@PITX2!0.92!7.24!PITX2;;chr3:170076314..170076334,+!p2@SKIL!0.91!9.57!SKIL;;chr12:54402790..54402805,+!p2@HOXC8!0.91!7.11!HOXC8;;chr17:46675558..46675577,-!p2@HOXB6!0.91!7.11!HOXB6;;chr3:178789522..178789564,-!p2@ZMAT3!0.90!53.91!ZMAT3;;chr17:46132044..46132080,+!p4@NFE2L1!0.90!6.98!NFE2L1;;chr1:151032860..151032918,+!p1@MLLT11!0.88!82.73!MLLT11;;chr12:26277956..26277980,-!p1@BHLHE41!0.88!25.08!BHLHE41;;chr17:46675420..46675465,-!p3@HOXB6!0.88!7.63!HOXB6;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.59!TBX20;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.07!TWIST2;;chr19:42636586..42636607,-!p1@POU2F2!0.86!18.23!POU2F2;;chr15:96869255..96869291,+!p6@NR2F2!0.86!11.76!NR2F2;;chr2:176969228..176969260,+!p1@HOXD11!0.85!6.08!HOXD11;;chr7:27192185..27192209,-!p1@HOXA3!0.83!5.69!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!0.83!5.69!HOXA11;;chr7:26191809..26191890,+!p1@NFE2L3!0.82!29.47!NFE2L3;;chr10:63809106..63809127,+!p1@ARID5B!0.81!79.50!ARID5B;;chr21:30671690..30671762,+!p2@BACH1!0.81!19.65!BACH1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.81!5.43!HOXC5;;chr12:54380036..54380091,+!p4@HOXC10!0.80!5.30!HOXC10;;chr12:26277929..26277955,-!p3@BHLHE41!0.79!7.50!BHLHE41;;chr8:72756063..72756125,-!p1@MSC!0.77!10.60!MSC;;chr6:10412600..10412637,-!p1@TFAP2A!0.77!8.53!TFAP2A;;chr7:27224795..27224840,-!p2@HOXA11!0.77!4.91!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!0.77!4.91!HOXC10;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.92!FOXD1;;chr4:174451350..174451363,-!p3@HAND2!0.76!4.78!HAND2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.76!4.78!SEBOX;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.51!TBX2;;chr16:86600426..86600441,+!p1@FOXC2!0.75!12.41!FOXC2;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.01!MECOM;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.41!SNAI2;;chr3:141121847..141121868,+!p5@ZBTB38!0.74!7.24!ZBTB38;;chr7:77428227..77428242,+!p3@PHTF2!0.73!6.85!PHTF2;;chr5:134369879..134369898,-!p2@PITX1!0.73!4.40!PITX1;;chr7:137686763..137686784,-!p5@CREB3L2!0.72!7.89!CREB3L2;;chr15:57511609..57511651,+!p2@TCF12!0.72!7.50!TCF12;;chr12:54422217..54422239,+!p3@HOXC6!0.72!4.27!HOXC6;;chr1:151032922..151032951,+!p2@MLLT11!0.71!7.24!MLLT11;;chr1:158985493..158985535,+!p4@IFI16!0.71!6.59!IFI16;;chr1:158979872..158979898,+!p3@IFI16!0.70!13.57!IFI16;;chr18:19749517..19749531,+!p3@GATA6!0.70!7.76!GATA6;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.69!NR2F2;;chr8:37963466..37963506,+!p3@ASH2L!0.70!5.17!ASH2L;;chr18:19749353..19749367,+!p4@GATA6!0.70!4.01!GATA6;;chr9:35732647..35732678,+!p2@CREB3!0.69!24.69!CREB3;;chr10:63809077..63809089,+!p5@ARID5B!0.69!9.31!ARID5B;;chr12:48298765..48298783,-!p2@VDR!0.69!8.92!VDR;;chr5:134369905..134369972,-!p1@PITX1!0.69!6.33!PITX1;;chr8:72756267..72756296,-!p4@MSC!0.69!6.08!MSC;;chr7:27196267..27196311,-!p1@HOXA7!0.69!3.88!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!0.69!3.88!HOXA9;;chr3:25469815..25469866,+!p3@RARB!0.69!3.88!RARB;;chr12:54380404..54380433,+!p3@HOXC10!0.69!3.88!HOXC10;;chr7:19157248..19157268,-!p1@TWIST1!0.68!11.51!TWIST1;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.72!PAWR;;chr21:36260295..36260310,-!p3@RUNX1!0.68!6.46!RUNX1;;chr12:80085120..80085156,-!p14@PAWR!0.68!3.75!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.66!16.29!ZBTB38;;chr3:101568349..101568365,+!p1@NFKBIZ!0.65!213.94!NFKBIZ;;chr7:77428149..77428220,+!p1@PHTF2!0.65!41.11!PHTF2;;chr6:91006518..91006570,-!p1@BACH2!0.65!8.92!BACH2;;chr2:185463247..185463263,+!p1@ZNF804A!0.65!6.59!ZNF804A;;chr7:44143997..44144008,+!p3@AEBP1!0.65!4.65!AEBP1;;chr7:27205106..27205134,-!p2@HOXA9!0.65!3.49!HOXA9;;chr11:46299443..46299459,+!p4@CREB3L1!0.65!3.49!CREB3L1;;chr12:115121962..115121987,-!p1@TBX3!0.64!32.96!TBX3;;chr8:77593474..77593612,+!p1@ZFHX4!0.64!16.29!ZFHX4;;chr1:211433275..211433335,+!p2@RCOR3!0.64!11.76!RCOR3;;chr7:44143978..44143989,+!p2@AEBP1!0.64!6.72!AEBP1;;chr16:67881588..67881612,-!p2@CENPT!0.64!4.78!CENPT;;chr15:96869222..96869251,+!p18@NR2F2!0.64!4.14!NR2F2;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.36!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!0.64!3.36!HOXB9;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.36!SOX11;;chr3:71630980..71631110,-!p3@FOXP1!0.63!13.19!FOXP1;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.57!NCOA7;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.98!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.63!4.91!NCOR2;;chr8:72756213..72756243,-!p5@MSC!0.63!4.40!MSC;;chr11:34642612..34642646,+!p1@EHF!0.63!3.23!EHF;;chr4:111558118..111558133,-!p5@PITX2!0.63!3.23!PITX2;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.95!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.62!5.30!HMGA2;;chr21:36260463..36260480,-!p9@RUNX1!0.62!4.52!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!0.62!4.01!TFAP2A;;chr5:137804484..137804498,+!p2@EGR1!0.61!14.48!EGR1;;chr8:23540441..23540466,-!p1@NKX3-1!0.61!6.85!NKX3-1;;chr6:126102292..126102329,+!p3@NCOA7!0.60!11.51!NCOA7;;chr1:170632959..170632987,+!p4@PRRX1!0.60!3.36!PRRX1;;chr10:64576035..64576046,-!p2@EGR2!0.60!2.97!EGR2;;chr12:54402729..54402743,+!p3@HOXC8!0.60!2.97!HOXC8;;chr5:142780168..142780186,-!p23@NR3C1!0.60!2.97!NR3C1;;chr12:124873357..124873401,-!p1@NCOR2!0.59!40.46!NCOR2;;chr21:36260343..36260402,-!p6@RUNX1!0.59!5.04!RUNX1;;chr12:125002739..125002756,-!p6@NCOR2!0.59!4.65!NCOR2;;chr17:46687959..46688007,-!p2@HOXB7!0.59!4.27!HOXB7;;chr6:10412392..10412409,-!p4@TFAP2A!0.59!3.36!TFAP2A;;chr12:80084167..80084197,-!p5@PAWR!0.58!7.50!PAWR;;chr10:63809134..63809145,+!p6@ARID5B!0.58!7.37!ARID5B;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.40!HMGA2;;chr8:72755987..72756002,-!p7@MSC!0.58!2.84!MSC;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.84!BNC1;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.84!ZNF668;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!242.38!TAX1BP3;;chr3:193853927..193853944,+!p1@HES1!0.57!110.92!HES1;;chr3:170075436..170075520,+!p1@SKIL!0.57!72.65!SKIL;;chr7:150945754..150945789,-!p2@SMARCD3!0.57!9.95!SMARCD3;;chr5:142780280..142780294,-!p16@NR3C1!0.57!2.71!NR3C1;;chr2:178128149..178128198,-!p2@NFE2L2!0.56!17.32!NFE2L2;;chr3:71179699..71179744,-!p2@FOXP1!0.55!23.53!FOXP1;;chr1:8763440..8763460,-!p2@RERE!0.55!15.64!RERE;;chr1:170633348..170633399,+!p2@PRRX1!0.55!3.75!PRRX1;;chr12:54394309..54394336,+!p2@HOXC9!0.55!2.59!HOXC9;;chr6:10412576..10412599,-!p5@TFAP2A!0.55!2.59!TFAP2A;;chr7:44143925..44143970,+!p1@AEBP1!0.54!70.84!AEBP1;;chr7:14029283..14029311,-!p1@ETV1!0.54!16.42!ETV1;;chr17:46621937..46621966,-!p2@HOXB2!0.54!7.89!HOXB2;;chr19:57792157..57792170,+!p6@ZNF460!0.54!4.01!ZNF460;;chr12:66218573..66218596,+!p7@HMGA2!0.54!4.01!HMGA2;;chr5:142782823..142782854,-!p3@NR3C1!0.54!3.88!NR3C1;;chr12:54394059..54394088,+!p3@HOXC9!0.54!2.46!HOXC9;;chr2:46524537..46524553,+!p1@EPAS1!0.53!305.73!EPAS1;;chr21:36260980..36261011,-!p1@RUNX1!0.53!89.46!RUNX1;;chr12:80084737..80084763,-!p3@PAWR!0.53!10.99!PAWR;;chr17:1959369..1959388,+!p2@HIC1!0.53!7.50!HIC1;;chr8:106330656..106330684,+!p1@ZFPM2!0.53!7.50!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.53!6.33!HOXB2;;chr3:178789993..178790049,-!p5@ZMAT3!0.53!3.88!ZMAT3;;chr12:66218443..66218461,+!p8@HMGA2!0.53!3.23!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.53!3.10!HOXC4;;chr1:212782094..212782109,+!p1@ATF3!0.52!81.83!ATF3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.52!36.58!ZC3H12A;;chr2:74229812..74229867,+!p1@TET3!0.52!6.98!TET3;;chr15:96874244..96874259,+!p5@NR2F2!0.52!6.59!NR2F2;;chr8:116681123..116681143,-!p4@TRPS1!0.52!5.17!TRPS1;;chr7:27196217..27196246,-!p2@HOXA7!0.52!2.33!HOXA7;;chr3:5022272..5022321,+!p7@BHLHE40!0.52!2.33!BHLHE40;;chr3:141087339..141087387,+!p2@ZBTB38!0.51!29.60!ZBTB38;;chr1:158969752..158969780,+!p6@IFI16!0.51!4.52!IFI16;;chr1:221053049..221053075,+!p3@HLX!0.51!4.40!HLX;;chr12:80084137..80084165,-!p10@PAWR!0.51!3.10!PAWR;;chr11:65667846..65667868,-!p1@FOSL1!0.50!75.49!FOSL1;;chr16:69599899..69599919,+!p2@NFAT5!0.50!32.45!NFAT5;;chr7:19157043..19157088,-!p2@TWIST1!0.50!6.59!TWIST1;;chr1:151032782..151032801,+!p4@MLLT11!0.50!5.04!MLLT11;;chr8:145159846..145159889,+!p6@MAF1!0.5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| |expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.55!ZBED1;;chr10:64576105..64576133,-!p1@EGR2!1.54!67.74!EGR2;;chr4:174451370..174451387,-!p1@HAND2!1.53!32.71!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.47!28.57!HOXC5;;chr16:86544113..86544145,+!p1@FOXF1!1.46!34.13!FOXF1;;chr4:111558135..111558198,-!p2@PITX2!1.34!20.94!PITX2;;chr12:66218836..66218888,+!p1@HMGA2!1.33!184.86!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.32!61.15!GATA6;;chr12:54402745..54402788,+!p1@HOXC8!1.30!18.87!HOXC8;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.52!CREB3L1;;chr20:50179368..50179392,-!p2@NFATC2!1.27!22.62!NFATC2;;chr15:83953397..83953425,-!p1@BNC1!1.27!20.17!BNC1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!77.18!HMGA2;;chr5:142780189..142780223,-!p6@NR3C1!1.25!16.68!NR3C1;;chr11:61520075..61520136,+!p1@C11orf9!1.22!32.45!C11orf9;;chr18:19749386..19749404,+!p2@GATA6!1.15!18.87!GATA6;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.54!HOXC9;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.55!CREB3L1;;chr12:26277817..26277863,-!p2@BHLHE41!1.11!16.03!BHLHE41;;chr12:66218904..66218913,+!p11@HMGA2!1.10!11.63!HMGA2;;chr7:1577899..1577943,+!p3@MAFK!1.10!11.63!MAFK;;chr19:45971246..45971265,+!p1@FOSB!1.09!209.16!FOSB;;chr21:36421535..36421610,-!p2@RUNX1!1.09!40.33!RUNX1;;chr6:134210243..134210257,+!p1@TCF21!1.05!10.21!TCF21;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.22!HOXB7;;chr12:66218255..66218304,+!p3@HMGA2!1.00!24.69!HMGA2;;chr18:53068911..53068935,-!p4@TCF4!0.99!9.95!TCF4;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.38!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.98!13.83!PAWR;;chr12:66218923..66218934,+!p14@HMGA2!0.98!8.53!HMGA2;;chr3:5021268..5021282,+!p4@BHLHE40!0.97!17.45!BHLHE40;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.27!HOXB6;;chr5:142780237..142780261,-!p7@NR3C1!0.96!8.14!NR3C1;;chr6:1312325..1312340,+!p1@FOXQ1!0.95!13.19!FOXQ1;;chr4:174450089..174450153,-!p2@HAND2!0.95!8.01!HAND2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.95!7.89!SEBOX;;chr3:25469724..25469773,+!p1@RARB!0.94!11.38!RARB;;chr4:111544219..111544240,-!p1@PITX2!0.92!7.24!PITX2;;chr3:170076314..170076334,+!p2@SKIL!0.91!9.57!SKIL;;chr12:54402790..54402805,+!p2@HOXC8!0.91!7.11!HOXC8;;chr17:46675558..46675577,-!p2@HOXB6!0.91!7.11!HOXB6;;chr3:178789522..178789564,-!p2@ZMAT3!0.90!53.91!ZMAT3;;chr17:46132044..46132080,+!p4@NFE2L1!0.90!6.98!NFE2L1;;chr1:151032860..151032918,+!p1@MLLT11!0.88!82.73!MLLT11;;chr12:26277956..26277980,-!p1@BHLHE41!0.88!25.08!BHLHE41;;chr17:46675420..46675465,-!p3@HOXB6!0.88!7.63!HOXB6;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.59!TBX20;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.07!TWIST2;;chr19:42636586..42636607,-!p1@POU2F2!0.86!18.23!POU2F2;;chr15:96869255..96869291,+!p6@NR2F2!0.86!11.76!NR2F2;;chr2:176969228..176969260,+!p1@HOXD11!0.85!6.08!HOXD11;;chr7:27192185..27192209,-!p1@HOXA3!0.83!5.69!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!0.83!5.69!HOXA11;;chr7:26191809..26191890,+!p1@NFE2L3!0.82!29.47!NFE2L3;;chr10:63809106..63809127,+!p1@ARID5B!0.81!79.50!ARID5B;;chr21:30671690..30671762,+!p2@BACH1!0.81!19.65!BACH1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.81!5.43!HOXC5;;chr12:54380036..54380091,+!p4@HOXC10!0.80!5.30!HOXC10;;chr12:26277929..26277955,-!p3@BHLHE41!0.79!7.50!BHLHE41;;chr8:72756063..72756125,-!p1@MSC!0.77!10.60!MSC;;chr6:10412600..10412637,-!p1@TFAP2A!0.77!8.53!TFAP2A;;chr7:27224795..27224840,-!p2@HOXA11!0.77!4.91!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!0.77!4.91!HOXC10;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.92!FOXD1;;chr4:174451350..174451363,-!p3@HAND2!0.76!4.78!HAND2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.76!4.78!SEBOX;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.51!TBX2;;chr16:86600426..86600441,+!p1@FOXC2!0.75!12.41!FOXC2;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.01!MECOM;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.41!SNAI2;;chr3:141121847..141121868,+!p5@ZBTB38!0.74!7.24!ZBTB38;;chr7:77428227..77428242,+!p3@PHTF2!0.73!6.85!PHTF2;;chr5:134369879..134369898,-!p2@PITX1!0.73!4.40!PITX1;;chr7:137686763..137686784,-!p5@CREB3L2!0.72!7.89!CREB3L2;;chr15:57511609..57511651,+!p2@TCF12!0.72!7.50!TCF12;;chr12:54422217..54422239,+!p3@HOXC6!0.72!4.27!HOXC6;;chr1:151032922..151032951,+!p2@MLLT11!0.71!7.24!MLLT11;;chr1:158985493..158985535,+!p4@IFI16!0.71!6.59!IFI16;;chr1:158979872..158979898,+!p3@IFI16!0.70!13.57!IFI16;;chr18:19749517..19749531,+!p3@GATA6!0.70!7.76!GATA6;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.69!NR2F2;;chr8:37963466..37963506,+!p3@ASH2L!0.70!5.17!ASH2L;;chr18:19749353..19749367,+!p4@GATA6!0.70!4.01!GATA6;;chr9:35732647..35732678,+!p2@CREB3!0.69!24.69!CREB3;;chr10:63809077..63809089,+!p5@ARID5B!0.69!9.31!ARID5B;;chr12:48298765..48298783,-!p2@VDR!0.69!8.92!VDR;;chr5:134369905..134369972,-!p1@PITX1!0.69!6.33!PITX1;;chr8:72756267..72756296,-!p4@MSC!0.69!6.08!MSC;;chr7:27196267..27196311,-!p1@HOXA7!0.69!3.88!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!0.69!3.88!HOXA9;;chr3:25469815..25469866,+!p3@RARB!0.69!3.88!RARB;;chr12:54380404..54380433,+!p3@HOXC10!0.69!3.88!HOXC10;;chr7:19157248..19157268,-!p1@TWIST1!0.68!11.51!TWIST1;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.72!PAWR;;chr21:36260295..36260310,-!p3@RUNX1!0.68!6.46!RUNX1;;chr12:80085120..80085156,-!p14@PAWR!0.68!3.75!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.66!16.29!ZBTB38;;chr3:101568349..101568365,+!p1@NFKBIZ!0.65!213.94!NFKBIZ;;chr7:77428149..77428220,+!p1@PHTF2!0.65!41.11!PHTF2;;chr6:91006518..91006570,-!p1@BACH2!0.65!8.92!BACH2;;chr2:185463247..185463263,+!p1@ZNF804A!0.65!6.59!ZNF804A;;chr7:44143997..44144008,+!p3@AEBP1!0.65!4.65!AEBP1;;chr7:27205106..27205134,-!p2@HOXA9!0.65!3.49!HOXA9;;chr11:46299443..46299459,+!p4@CREB3L1!0.65!3.49!CREB3L1;;chr12:115121962..115121987,-!p1@TBX3!0.64!32.96!TBX3;;chr8:77593474..77593612,+!p1@ZFHX4!0.64!16.29!ZFHX4;;chr1:211433275..211433335,+!p2@RCOR3!0.64!11.76!RCOR3;;chr7:44143978..44143989,+!p2@AEBP1!0.64!6.72!AEBP1;;chr16:67881588..67881612,-!p2@CENPT!0.64!4.78!CENPT;;chr15:96869222..96869251,+!p18@NR2F2!0.64!4.14!NR2F2;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.36!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!0.64!3.36!HOXB9;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.36!SOX11;;chr3:71630980..71631110,-!p3@FOXP1!0.63!13.19!FOXP1;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.57!NCOA7;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.98!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.63!4.91!NCOR2;;chr8:72756213..72756243,-!p5@MSC!0.63!4.40!MSC;;chr11:34642612..34642646,+!p1@EHF!0.63!3.23!EHF;;chr4:111558118..111558133,-!p5@PITX2!0.63!3.23!PITX2;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.95!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.62!5.30!HMGA2;;chr21:36260463..36260480,-!p9@RUNX1!0.62!4.52!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!0.62!4.01!TFAP2A;;chr5:137804484..137804498,+!p2@EGR1!0.61!14.48!EGR1;;chr8:23540441..23540466,-!p1@NKX3-1!0.61!6.85!NKX3-1;;chr6:126102292..126102329,+!p3@NCOA7!0.60!11.51!NCOA7;;chr1:170632959..170632987,+!p4@PRRX1!0.60!3.36!PRRX1;;chr10:64576035..64576046,-!p2@EGR2!0.60!2.97!EGR2;;chr12:54402729..54402743,+!p3@HOXC8!0.60!2.97!HOXC8;;chr5:142780168..142780186,-!p23@NR3C1!0.60!2.97!NR3C1;;chr12:124873357..124873401,-!p1@NCOR2!0.59!40.46!NCOR2;;chr21:36260343..36260402,-!p6@RUNX1!0.59!5.04!RUNX1;;chr12:125002739..125002756,-!p6@NCOR2!0.59!4.65!NCOR2;;chr17:46687959..46688007,-!p2@HOXB7!0.59!4.27!HOXB7;;chr6:10412392..10412409,-!p4@TFAP2A!0.59!3.36!TFAP2A;;chr12:80084167..80084197,-!p5@PAWR!0.58!7.50!PAWR;;chr10:63809134..63809145,+!p6@ARID5B!0.58!7.37!ARID5B;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.40!HMGA2;;chr8:72755987..72756002,-!p7@MSC!0.58!2.84!MSC;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.84!BNC1;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.84!ZNF668;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!242.38!TAX1BP3;;chr3:193853927..193853944,+!p1@HES1!0.57!110.92!HES1;;chr3:170075436..170075520,+!p1@SKIL!0.57!72.65!SKIL;;chr7:150945754..150945789,-!p2@SMARCD3!0.57!9.95!SMARCD3;;chr5:142780280..142780294,-!p16@NR3C1!0.57!2.71!NR3C1;;chr2:178128149..178128198,-!p2@NFE2L2!0.56!17.32!NFE2L2;;chr3:71179699..71179744,-!p2@FOXP1!0.55!23.53!FOXP1;;chr1:8763440..8763460,-!p2@RERE!0.55!15.64!RERE;;chr1:170633348..170633399,+!p2@PRRX1!0.55!3.75!PRRX1;;chr12:54394309..54394336,+!p2@HOXC9!0.55!2.59!HOXC9;;chr6:10412576..10412599,-!p5@TFAP2A!0.55!2.59!TFAP2A;;chr7:44143925..44143970,+!p1@AEBP1!0.54!70.84!AEBP1;;chr7:14029283..14029311,-!p1@ETV1!0.54!16.42!ETV1;;chr17:46621937..46621966,-!p2@HOXB2!0.54!7.89!HOXB2;;chr19:57792157..57792170,+!p6@ZNF460!0.54!4.01!ZNF460;;chr12:66218573..66218596,+!p7@HMGA2!0.54!4.01!HMGA2;;chr5:142782823..142782854,-!p3@NR3C1!0.54!3.88!NR3C1;;chr12:54394059..54394088,+!p3@HOXC9!0.54!2.46!HOXC9;;chr2:46524537..46524553,+!p1@EPAS1!0.53!305.73!EPAS1;;chr21:36260980..36261011,-!p1@RUNX1!0.53!89.46!RUNX1;;chr12:80084737..80084763,-!p3@PAWR!0.53!10.99!PAWR;;chr17:1959369..1959388,+!p2@HIC1!0.53!7.50!HIC1;;chr8:106330656..106330684,+!p1@ZFPM2!0.53!7.50!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.53!6.33!HOXB2;;chr3:178789993..178790049,-!p5@ZMAT3!0.53!3.88!ZMAT3;;chr12:66218443..66218461,+!p8@HMGA2!0.53!3.23!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.53!3.10!HOXC4;;chr1:212782094..212782109,+!p1@ATF3!0.52!81.83!ATF3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.52!36.58!ZC3H12A;;chr2:74229812..74229867,+!p1@TET3!0.52!6.98!TET3;;chr15:96874244..96874259,+!p5@NR2F2!0.52!6.59!NR2F2;;chr8:116681123..116681143,-!p4@TRPS1!0.52!5.17!TRPS1;;chr7:27196217..27196246,-!p2@HOXA7!0.52!2.33!HOXA7;;chr3:5022272..5022321,+!p7@BHLHE40!0.52!2.33!BHLHE40;;chr3:141087339..141087387,+!p2@ZBTB38!0.51!29.60!ZBTB38;;chr1:158969752..158969780,+!p6@IFI16!0.51!4.52!IFI16;;chr1:221053049..221053075,+!p3@HLX!0.51!4.40!HLX;;chr12:80084137..80084165,-!p10@PAWR!0.51!3.10!PAWR;;chr11:65667846..65667868,-!p1@FOSL1!0.50!75.49!FOSL1;;chr16:69599899..69599919,+!p2@NFAT5!0.50!32.45!NFAT5;;chr7:19157043..19157088,-!p2@TWIST1!0.50!6.59!TWIST1;;chr1:151032782..151032801,+!p4@MLLT11!0.50!5.04!MLLT11;;chr8:145159846..145159889,+!p6@MAF1!0.5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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11548-120B9 | |id=FF:11548-120B9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000095 | ||
|is_obsolete= | |||
|library_id=CNhs11057 | |||
|library_id_phase_based=2:CNhs11057 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11548 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.CAGATC.11548 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11548 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.CAGATC.11548 | |||
|name=Mesenchymal Stem Cells - Wharton's Jelly, donor1 | |name=Mesenchymal Stem Cells - Wharton's Jelly, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11057,LSID722,release008,COMPLETED | |profile_hcage=CNhs11057,LSID722,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120B9 | |rna_tube_id=120B9 | ||
|rna_weight_ug=6.9 | |rna_weight_ug=6.9 | ||
|rnaseq_library_id=SRhi10007.CAGATC | |||
|sample_age=? | |sample_age=? | ||
|sample_category=primary cells | |||
|sample_cell_catalog=HMSC.WJ-500 | |sample_cell_catalog=HMSC.WJ-500 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=umbilical cord | |sample_tissue=umbilical cord | ||
|top_motifs=HMGA1,2:2.29216472407;TAL1_TCF{3,4,12}:2.0204594457;TEF:1.85728715334;HSF1,2:1.69812906134;FOX{I1,J2}:1.4529556827;HOX{A5,B5}:1.40103884162;XBP1:1.26876873795;MAFB:1.23517160472;EN1,2:1.17308846165;NKX3-1:1.14418499768;MYBL2:1.13917059116;TEAD1:1.10039896141;ADNP_IRX_SIX_ZHX:0.967619985156;DBP:0.960569050586;IKZF1:0.911749326026;GLI1..3:0.905582125293;NFATC1..3:0.900060339785;ATF6:0.898163282506;ESR1:0.897931872659;EVI1:0.880715140483;SPZ1:0.829424506229;NFE2L1:0.792804038643;PAX4:0.775515638656;bHLH_family:0.768800025662;SMAD1..7,9:0.764923461088;HMX1:0.73797132952;SRF:0.719021071063;HES1:0.71884721935;ALX4:0.701231292711;ONECUT1,2:0.694543068727;TP53:0.693326814832;GTF2A1,2:0.682823423602;NFE2L2:0.670057980809;SOX17:0.648102125451;HIF1A:0.640972786585;ZNF238:0.634386731542;MTE{core}:0.607233588865;TFAP2{A,C}:0.601726590568;UFEwm:0.585804799751;NFIX:0.584877791304;STAT5{A,B}:0.579733752661;SREBF1,2:0.571647241752;SOX2:0.56822196076;POU3F1..4:0.535069926608;PAX8:0.504590375834;CRX:0.490791129062;TFCP2:0.487518270967;NR6A1:0.466129668599;RXR{A,B,G}:0.460425482773;LHX3,4:0.460243926718;PRDM1:0.456895554161;GZF1:0.454310066567;TFAP2B:0.437212426958;NHLH1,2:0.422471919594;ALX1:0.418721789681;GFI1B:0.409374126964;NANOG{mouse}:0.395446303535;CDC5L:0.389428452998;TLX2:0.385065206676;MAZ:0.379326711044;ZNF384:0.372864437296;ARID5B:0.371263385758;FOXD3:0.369090253147;HIC1:0.360840006901;KLF4:0.347150855444;GTF2I:0.345661787306;HBP1_HMGB_SSRP1_UBTF:0.339613577386;NR3C1:0.339244099614;ZBTB6:0.336200722117;AHR_ARNT_ARNT2:0.332920517045;EBF1:0.332898755331;XCPE1{core}:0.305517964861;HOX{A4,D4}:0.303634320862;TLX1..3_NFIC{dimer}:0.299806145705;TOPORS:0.296133068716;FOXQ1:0.292720783044;HLF:0.287266239395;PAX6:0.286881153911;POU5F1:0.285347417759;TBX4,5:0.271761777471;SOX5:0.260724403703;ELK1,4_GABP{A,B1}:0.25220307435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217023382403;ZFP161:0.208246239231;NKX2-1,4:0.20612571837;AIRE:0.19875837661;NKX6-1,2:0.194456662118;MZF1:0.18224288093;GATA4:0.181475655764;HOXA9_MEIS1:0.179472465719;FOS_FOS{B,L1}_JUN{B,D}:0.176330152217;LEF1_TCF7_TCF7L1,2:0.17057655815;HOX{A6,A7,B6,B7}:0.167785865969;FOSL2:0.158284787418;RFX1:0.15662707353;MYFfamily:0.153831933488;BACH2:0.147566781541;FOXP1:0.131978252641;REST:0.124887801707;RUNX1..3:0.118327024168;HAND1,2:0.104918062105;PRRX1,2:0.104693079304;NKX2-3_NKX2-5:0.1003693126;FOX{D1,D2}:0.0809991232699;PPARG:0.0721905159639;RXRA_VDR{dimer}:0.069336134669;DMAP1_NCOR{1,2}_SMARC:0.0631850621919;HNF1A:0.0543140438589;PAX2:0.0491691894629;EGR1..3:0.0480681453357;PATZ1:0.0273186116852;ZNF148:0.0214130792466;ATF2:0.0171432498656;TFAP4:0.0134214106546;TBP:-0.000181842590188;NKX2-2,8:-0.00469982642849;GATA6:-0.030438481471;ZBTB16:-0.0348144942748;ZNF143:-0.0642820655608;NFE2:-0.0671409694338;SP1:-0.0754693365261;TFDP1:-0.0781241149974;STAT2,4,6:-0.0787933807035;ZIC1..3:-0.0804235204801;MED-1{core}:-0.0809116322284;CEBPA,B_DDIT3:-0.0829149172525;FOXM1:-0.0915252278105;MTF1:-0.115205089188;FOXA2:-0.12347932298;NFIL3:-0.135205083086;PAX5:-0.139480706924;NRF1:-0.142283341646;NFKB1_REL_RELA:-0.143108393872;ELF1,2,4:-0.152579354342;NR1H4:-0.157128683522;POU6F1:-0.162863387156;FOXL1:-0.17450354519;PAX1,9:-0.189183769799;JUN:-0.200640741601;MEF2{A,B,C,D}:-0.204405828018;FOXN1:-0.276781407131;FOXO1,3,4:-0.29089092138;ZNF423:-0.299511529892;IRF1,2:-0.308055678427;AR:-0.334676496489;HNF4A_NR2F1,2:-0.350137673132;ESRRA:-0.35704572899;STAT1,3:-0.376485160165;OCT4_SOX2{dimer}:-0.376500226738;GCM1,2:-0.384480333108;FOX{F1,F2,J1}:-0.384691128898;CREB1:-0.397973801948;ETS1,2:-0.413655973472;FOXP3:-0.420511137828;PDX1:-0.424175349949;CDX1,2,4:-0.426321373831;IRF7:-0.428589406573;RORA:-0.436161065049;YY1:-0.438095526188;ATF5_CREB3:-0.447833874161;SPI1:-0.454436298802;PAX3,7:-0.462579312899;PITX1..3:-0.465233564071;RREB1:-0.487049970052;CUX2:-0.48789096596;NKX3-2:-0.49590732286;SNAI1..3:-0.507185924611;NR5A1,2:-0.517464282623;TGIF1:-0.526733545689;PBX1:-0.532386094532;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544020957247;NANOG:-0.547496593384;SPIB:-0.550820619615;VSX1,2:-0.563467820079;GFI1:-0.566643245149;ATF4:-0.614072908898;ZEB1:-0.614319461783;BPTF:-0.6343493613;POU1F1:-0.641135560708;LMO2:-0.650076079073;MYOD1:-0.657682569981;MYB:-0.75754904766;SOX{8,9,10}:-0.771808882863;RFX2..5_RFXANK_RFXAP:-0.79442307688;BREu{core}:-0.845194993329;IKZF2:-0.8561231265;EP300:-0.887580466888;NFY{A,B,C}:-1.0369226644;E2F1..5:-1.04134256904;T:-1.25368331026;POU2F1..3:-1.25383787458;RBPJ:-1.37992420216 | |top_motifs=HMGA1,2:2.29216472407;TAL1_TCF{3,4,12}:2.0204594457;TEF:1.85728715334;HSF1,2:1.69812906134;FOX{I1,J2}:1.4529556827;HOX{A5,B5}:1.40103884162;XBP1:1.26876873795;MAFB:1.23517160472;EN1,2:1.17308846165;NKX3-1:1.14418499768;MYBL2:1.13917059116;TEAD1:1.10039896141;ADNP_IRX_SIX_ZHX:0.967619985156;DBP:0.960569050586;IKZF1:0.911749326026;GLI1..3:0.905582125293;NFATC1..3:0.900060339785;ATF6:0.898163282506;ESR1:0.897931872659;EVI1:0.880715140483;SPZ1:0.829424506229;NFE2L1:0.792804038643;PAX4:0.775515638656;bHLH_family:0.768800025662;SMAD1..7,9:0.764923461088;HMX1:0.73797132952;SRF:0.719021071063;HES1:0.71884721935;ALX4:0.701231292711;ONECUT1,2:0.694543068727;TP53:0.693326814832;GTF2A1,2:0.682823423602;NFE2L2:0.670057980809;SOX17:0.648102125451;HIF1A:0.640972786585;ZNF238:0.634386731542;MTE{core}:0.607233588865;TFAP2{A,C}:0.601726590568;UFEwm:0.585804799751;NFIX:0.584877791304;STAT5{A,B}:0.579733752661;SREBF1,2:0.571647241752;SOX2:0.56822196076;POU3F1..4:0.535069926608;PAX8:0.504590375834;CRX:0.490791129062;TFCP2:0.487518270967;NR6A1:0.466129668599;RXR{A,B,G}:0.460425482773;LHX3,4:0.460243926718;PRDM1:0.456895554161;GZF1:0.454310066567;TFAP2B:0.437212426958;NHLH1,2:0.422471919594;ALX1:0.418721789681;GFI1B:0.409374126964;NANOG{mouse}:0.395446303535;CDC5L:0.389428452998;TLX2:0.385065206676;MAZ:0.379326711044;ZNF384:0.372864437296;ARID5B:0.371263385758;FOXD3:0.369090253147;HIC1:0.360840006901;KLF4:0.347150855444;GTF2I:0.345661787306;HBP1_HMGB_SSRP1_UBTF:0.339613577386;NR3C1:0.339244099614;ZBTB6:0.336200722117;AHR_ARNT_ARNT2:0.332920517045;EBF1:0.332898755331;XCPE1{core}:0.305517964861;HOX{A4,D4}:0.303634320862;TLX1..3_NFIC{dimer}:0.299806145705;TOPORS:0.296133068716;FOXQ1:0.292720783044;HLF:0.287266239395;PAX6:0.286881153911;POU5F1:0.285347417759;TBX4,5:0.271761777471;SOX5:0.260724403703;ELK1,4_GABP{A,B1}:0.25220307435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217023382403;ZFP161:0.208246239231;NKX2-1,4:0.20612571837;AIRE:0.19875837661;NKX6-1,2:0.194456662118;MZF1:0.18224288093;GATA4:0.181475655764;HOXA9_MEIS1:0.179472465719;FOS_FOS{B,L1}_JUN{B,D}:0.176330152217;LEF1_TCF7_TCF7L1,2:0.17057655815;HOX{A6,A7,B6,B7}:0.167785865969;FOSL2:0.158284787418;RFX1:0.15662707353;MYFfamily:0.153831933488;BACH2:0.147566781541;FOXP1:0.131978252641;REST:0.124887801707;RUNX1..3:0.118327024168;HAND1,2:0.104918062105;PRRX1,2:0.104693079304;NKX2-3_NKX2-5:0.1003693126;FOX{D1,D2}:0.0809991232699;PPARG:0.0721905159639;RXRA_VDR{dimer}:0.069336134669;DMAP1_NCOR{1,2}_SMARC:0.0631850621919;HNF1A:0.0543140438589;PAX2:0.0491691894629;EGR1..3:0.0480681453357;PATZ1:0.0273186116852;ZNF148:0.0214130792466;ATF2:0.0171432498656;TFAP4:0.0134214106546;TBP:-0.000181842590188;NKX2-2,8:-0.00469982642849;GATA6:-0.030438481471;ZBTB16:-0.0348144942748;ZNF143:-0.0642820655608;NFE2:-0.0671409694338;SP1:-0.0754693365261;TFDP1:-0.0781241149974;STAT2,4,6:-0.0787933807035;ZIC1..3:-0.0804235204801;MED-1{core}:-0.0809116322284;CEBPA,B_DDIT3:-0.0829149172525;FOXM1:-0.0915252278105;MTF1:-0.115205089188;FOXA2:-0.12347932298;NFIL3:-0.135205083086;PAX5:-0.139480706924;NRF1:-0.142283341646;NFKB1_REL_RELA:-0.143108393872;ELF1,2,4:-0.152579354342;NR1H4:-0.157128683522;POU6F1:-0.162863387156;FOXL1:-0.17450354519;PAX1,9:-0.189183769799;JUN:-0.200640741601;MEF2{A,B,C,D}:-0.204405828018;FOXN1:-0.276781407131;FOXO1,3,4:-0.29089092138;ZNF423:-0.299511529892;IRF1,2:-0.308055678427;AR:-0.334676496489;HNF4A_NR2F1,2:-0.350137673132;ESRRA:-0.35704572899;STAT1,3:-0.376485160165;OCT4_SOX2{dimer}:-0.376500226738;GCM1,2:-0.384480333108;FOX{F1,F2,J1}:-0.384691128898;CREB1:-0.397973801948;ETS1,2:-0.413655973472;FOXP3:-0.420511137828;PDX1:-0.424175349949;CDX1,2,4:-0.426321373831;IRF7:-0.428589406573;RORA:-0.436161065049;YY1:-0.438095526188;ATF5_CREB3:-0.447833874161;SPI1:-0.454436298802;PAX3,7:-0.462579312899;PITX1..3:-0.465233564071;RREB1:-0.487049970052;CUX2:-0.48789096596;NKX3-2:-0.49590732286;SNAI1..3:-0.507185924611;NR5A1,2:-0.517464282623;TGIF1:-0.526733545689;PBX1:-0.532386094532;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544020957247;NANOG:-0.547496593384;SPIB:-0.550820619615;VSX1,2:-0.563467820079;GFI1:-0.566643245149;ATF4:-0.614072908898;ZEB1:-0.614319461783;BPTF:-0.6343493613;POU1F1:-0.641135560708;LMO2:-0.650076079073;MYOD1:-0.657682569981;MYB:-0.75754904766;SOX{8,9,10}:-0.771808882863;RFX2..5_RFXANK_RFXAP:-0.79442307688;BREu{core}:-0.845194993329;IKZF2:-0.8561231265;EP300:-0.887580466888;NFY{A,B,C}:-1.0369226644;E2F1..5:-1.04134256904;T:-1.25368331026;POU2F1..3:-1.25383787458;RBPJ:-1.37992420216 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11548-120B9;search_select_hide=table117:FF:11548-120B9 | |||
}} | }} | ||
Latest revision as of 18:08, 4 June 2020
| Name: | Mesenchymal Stem Cells - Wharton's Jelly, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11057 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11057
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11057
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.414 |
| 10 | 10 | 0.552 |
| 100 | 100 | 0.927 |
| 101 | 101 | 0.645 |
| 102 | 102 | 0.183 |
| 103 | 103 | 0.463 |
| 104 | 104 | 0.915 |
| 105 | 105 | 0.139 |
| 106 | 106 | 0.129 |
| 107 | 107 | 0.305 |
| 108 | 108 | 0.48 |
| 109 | 109 | 0.364 |
| 11 | 11 | 0.264 |
| 110 | 110 | 0.679 |
| 111 | 111 | 0.182 |
| 112 | 112 | 0.89 |
| 113 | 113 | 0.00128 |
| 114 | 114 | 0.956 |
| 115 | 115 | 0.22 |
| 116 | 116 | 0.227 |
| 117 | 117 | 0.277 |
| 118 | 118 | 0.271 |
| 119 | 119 | 0.943 |
| 12 | 12 | 0.174 |
| 120 | 120 | 0.971 |
| 121 | 121 | 0.684 |
| 122 | 122 | 0.18 |
| 123 | 123 | 0.0805 |
| 124 | 124 | 0.51 |
| 125 | 125 | 0.468 |
| 126 | 126 | 0.29 |
| 127 | 127 | 0.946 |
| 128 | 128 | 0.565 |
| 129 | 129 | 0.188 |
| 13 | 13 | 0.497 |
| 130 | 130 | 0.769 |
| 131 | 131 | 0.0515 |
| 132 | 132 | 0.643 |
| 133 | 133 | 0.355 |
| 134 | 134 | 0.317 |
| 135 | 135 | 0.619 |
| 136 | 136 | 0.631 |
| 137 | 137 | 0.253 |
| 138 | 138 | 0.982 |
| 139 | 139 | 0.0286 |
| 14 | 14 | 0.0842 |
| 140 | 140 | 0.464 |
| 141 | 141 | 0.0433 |
| 142 | 142 | 0.736 |
| 143 | 143 | 0.756 |
| 144 | 144 | 0.4 |
| 145 | 145 | 0.886 |
| 146 | 146 | 0.685 |
| 147 | 147 | 0.326 |
| 148 | 148 | 0.295 |
| 149 | 149 | 0.0412 |
| 15 | 15 | 0.948 |
| 150 | 150 | 0.228 |
| 151 | 151 | 0.984 |
| 152 | 152 | 0.0238 |
| 153 | 153 | 0.189 |
| 154 | 154 | 0.674 |
| 155 | 155 | 1.78201e-4 |
| 156 | 156 | 0.34 |
| 157 | 157 | 0.681 |
| 158 | 158 | 0.0077 |
| 159 | 159 | 0.288 |
| 16 | 16 | 0.164 |
| 160 | 160 | 0.233 |
| 161 | 161 | 0.704 |
| 162 | 162 | 0.388 |
| 163 | 163 | 0.511 |
| 164 | 164 | 0.129 |
| 165 | 165 | 0.872 |
| 166 | 166 | 0.0515 |
| 167 | 167 | 0.454 |
| 168 | 168 | 0.18 |
| 169 | 169 | 0.75 |
| 17 | 17 | 0.991 |
| 18 | 18 | 0.219 |
| 19 | 19 | 0.715 |
| 2 | 2 | 0.779 |
| 20 | 20 | 0.563 |
| 21 | 21 | 0.843 |
| 22 | 22 | 0.844 |
| 23 | 23 | 0.429 |
| 24 | 24 | 0.843 |
| 25 | 25 | 0.0745 |
| 26 | 26 | 0.256 |
| 27 | 27 | 0.593 |
| 28 | 28 | 0.383 |
| 29 | 29 | 0.718 |
| 3 | 3 | 0.807 |
| 30 | 30 | 0.677 |
| 31 | 31 | 0.986 |
| 32 | 32 | 3.16451e-8 |
| 33 | 33 | 0.643 |
| 34 | 34 | 0.804 |
| 35 | 35 | 0.677 |
| 36 | 36 | 0.377 |
| 37 | 37 | 0.289 |
| 38 | 38 | 0.0534 |
| 39 | 39 | 0.319 |
| 4 | 4 | 0.297 |
| 40 | 40 | 0.198 |
| 41 | 41 | 0.333 |
| 42 | 42 | 0.14 |
| 43 | 43 | 0.404 |
| 44 | 44 | 0.802 |
| 45 | 45 | 0.666 |
| 46 | 46 | 0.516 |
| 47 | 47 | 0.129 |
| 48 | 48 | 0.479 |
| 49 | 49 | 0.0813 |
| 5 | 5 | 0.613 |
| 50 | 50 | 0.936 |
| 51 | 51 | 0.596 |
| 52 | 52 | 0.931 |
| 53 | 53 | 0.333 |
| 54 | 54 | 0.869 |
| 55 | 55 | 0.048 |
| 56 | 56 | 0.566 |
| 57 | 57 | 0.941 |
| 58 | 58 | 0.0209 |
| 59 | 59 | 0.279 |
| 6 | 6 | 0.453 |
| 60 | 60 | 0.322 |
| 61 | 61 | 0.299 |
| 62 | 62 | 0.0795 |
| 63 | 63 | 0.88 |
| 64 | 64 | 0.442 |
| 65 | 65 | 0.243 |
| 66 | 66 | 0.247 |
| 67 | 67 | 0.333 |
| 68 | 68 | 0.351 |
| 69 | 69 | 0.956 |
| 7 | 7 | 0.0582 |
| 70 | 70 | 0.676 |
| 71 | 71 | 0.887 |
| 72 | 72 | 0.542 |
| 73 | 73 | 0.0877 |
| 74 | 74 | 0.336 |
| 75 | 75 | 0.53 |
| 76 | 76 | 0.903 |
| 77 | 77 | 0.88 |
| 78 | 78 | 0.0898 |
| 79 | 79 | 0.0185 |
| 8 | 8 | 0.997 |
| 80 | 80 | 0.614 |
| 81 | 81 | 0.675 |
| 82 | 82 | 0.452 |
| 83 | 83 | 0.898 |
| 84 | 84 | 0.457 |
| 85 | 85 | 0.714 |
| 86 | 86 | 0.953 |
| 87 | 87 | 0.325 |
| 88 | 88 | 0.821 |
| 89 | 89 | 0.349 |
| 9 | 9 | 0.854 |
| 90 | 90 | 0.92 |
| 91 | 91 | 0.89 |
| 92 | 92 | 0.44 |
| 93 | 93 | 0.434 |
| 94 | 94 | 0.816 |
| 95 | 95 | 0.644 |
| 96 | 96 | 0.609 |
| 97 | 97 | 0.138 |
| 98 | 98 | 0.00417 |
| 99 | 99 | 0.046 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11057
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000095 human mesenchymal stem cell of Wharton's jelly sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)
0002568 (mesenchymal stem cell of Wharton's jelly)
UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)
0000095 (human mesenchymal stem cell of Wharton's jelly sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
