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{{UBERON
{{UBERON
|id=UBERON:0002165
|alt_id=UBERON:FMA_7280-XAO_0000066-ZFA_0001320
|name=endocardium
|namespace=
|def="The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]." [FMA:7280, Wikipedia:Endocardium]
|xref=AAO:0010408;;BTO:0000387;;EFO:0000821;;EHDAA2:0004153;;EV:0100021;;FMA:7280;;GAID:550;;galen:Endocardium;;http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray493.png/200px-Gray493.png;;MA:0000076;;MAT:0000455;;MESH:A.07.541.207;;ncithesaurus:Endocardium;;OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw;;SCTID:362013006;;TAO:0001320;;VHOG:0000084;;XAO:0000066;;ZFA:0001320
|is_a=UBERON:0002523;;UBERON:0005983
|synonym="heart endocardium" EXACT []
|comment=fixed in GO to reflect FMA. See email to David/Varsha June 18 2010
|comment=fixed in GO to reflect FMA. See email to David/Varsha June 18 2010
|alt_id=UBERON:FMA_7280-XAO_0000066-ZFA_0001320
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]." [FMA:7280, Wikipedia:Endocardium]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0003084;;UBERON:0007280
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002165
|is_a=UBERON:0002523 ;;UBERON:0005983
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=endocardium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000948
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Layer that lines the lumen of the heart.[TAO]" xsd:string;;UBPROP:0000001 "Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Layer that lines the lumen of the heart.[TAO]" xsd:string;;UBPROP:0000001 "Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="heart endocardium" EXACT []
|union_of=
|xref=AAO:0010408;;BTO:0000387;;EFO:0000821;;EHDAA2:0004153;;EV:0100021;;FMA:7280;;GAID:550;;galen:Endocardium;;http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray493.png/200px-Gray493.png;;MA:0000076;;MAT:0000455;;MESH:A.07.541.207;;ncithesaurus:Endocardium;;OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw;;SCTID:362013006;;TAO:0001320;;VHOG:0000084;;XAO:0000066;;ZFA:0001320
}}
}}

Latest revision as of 17:27, 12 September 2014

Name:endocardium
Namespace:FANTOM
Definition:"The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]." [FMA:7280, Wikipedia:Endocardium]
Xrefs:
links:

AAO:0010408
BTO:0000387
EFO:0000821
EHDAA2:0004153
EV:0100021
FMA:7280
GAID:550
galen:Endocardium
[ Gray493.png Gray493.png]
[ 200px-Gray493.png 200px-Gray493.png]
MA:0000076
MAT:0000455
MESH:A.07.541.207
ncithesaurus:Endocardium
OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw
SCTID:362013006
TAO:0001320
VHOG:0000084
XAO:0000066

ZFA:0001320
Synonyms: "heart endocardium" EXACT []
Comments:fixed in GO to reflect FMA. See email to David/Varsha June 18 2010
Alt_id: UBERON:FMA_7280-XAO_0000066-ZFA_0001320
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002523(tunica intima),UBERON:0005983(heart layer)
develops_from:UBERON:0003084(heart primordium),UBERON:0007280(presumptive endocardium)
part_of:UBERON:0000948(heart)



Children

part of:UBERON:0002062 (endocardial cushion)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002165 (endocardium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.41e-147FFCP PHASE1:Hg19::chr7:25815812..25815822,-#_f61ad24957416ad5c33b19055cbe4b93p@chr7:25815812..25815822, -
5.41e-147FFCP PHASE2:Hg19::chr7:25815812..25815822,-#_f61ad24957416ad5c33b19055cbe4b93p@chr7:25815812..25815822, -
8.98e-131FFCP PHASE2:Hg19::chr12:3373147..3373149,-#_c7c88a37bb4c4e2d38b4bc5a2ec82b69p@chr12:3373147..3373149, -
8.98e-131FFCP PHASE1:Hg19::chr12:3373147..3373149,-#_c7c88a37bb4c4e2d38b4bc5a2ec82b69p@chr12:3373147..3373149, -
7.78e-118FFCP PHASE2:Hg19::chr1:20355975..20355980,-#_c9a360ad2e81a1d455ac2f1d9c7c382dp@chr1:20355975..20355980, -
7.78e-118FFCP PHASE1:Hg19::chr1:20355975..20355980,-#_c9a360ad2e81a1d455ac2f1d9c7c382dp@chr1:20355975..20355980, -
5.69e-99FFCP PHASE1:Hg19::chr1:237331032..237331036,+#_9c89d50734dfb153f62a49d4349742dfp@chr1:237331032..237331036, +
5.69e-99FFCP PHASE2:Hg19::chr1:237331032..237331036,+#_9c89d50734dfb153f62a49d4349742dfp@chr1:237331032..237331036, +
1.52e-87FFCP PHASE1:Hg19::chr6:6739548..6739577,-#_012aa305c9db55ee84d4f89ecffc7c98p@chr6:6739548..6739577, -
1.52e-87FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_012aa305c9db55ee84d4f89ecffc7c98p9@NPPA
1.52e-87FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_012aa305c9db55ee84d4f89ecffc7c98p9@NPPA
1.52e-87FFCP PHASE2:Hg19::chr6:6739548..6739577,-#_012aa305c9db55ee84d4f89ecffc7c98p@chr6:6739548..6739577, -
1.52e-87FFCP PHASE1:Hg19::chr2:18116344..18116353,+#_012aa305c9db55ee84d4f89ecffc7c98p@chr2:18116344..18116353, +
1.52e-87FFCP PHASE2:Hg19::chr2:18116344..18116353,+#_012aa305c9db55ee84d4f89ecffc7c98p@chr2:18116344..18116353, +
7.21e-85FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_4745321fed781b6bf0ad3dd3ae77a41ep@chrX:112324334..112324339, -
7.21e-85FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_4745321fed781b6bf0ad3dd3ae77a41ep@chrX:112324334..112324339, -
1.71e-84FFCP PHASE1:Hg19::chr2:220491902..220491915,+#_0b2c3284125264ababe4f5e498970da6p11@SLC4A3
1.71e-84FFCP PHASE2:Hg19::chr2:220491902..220491915,+#_0b2c3284125264ababe4f5e498970da6p11@SLC4A3
2.27e-84FFCP PHASE2:Hg19::chr2:179533457..179533461,-#_a632be7d87216933416297ca21150b67p@chr2:179533457..179533461, -
2.27e-84FFCP PHASE1:Hg19::chr2:179533457..179533461,-#_a632be7d87216933416297ca21150b67p@chr2:179533457..179533461, -
3.03e-84FFCP PHASE1:Hg19::chr2:179398102..179398109,-#_ef36abedf210c436057d9fd2eb8d54efp@chr2:179398102..179398109, -
3.03e-84FFCP PHASE2:Hg19::chr2:179398102..179398109,-#_ef36abedf210c436057d9fd2eb8d54efp@chr2:179398102..179398109, -
7.81e-75FFCP PHASE2:Hg19::chr5:123739302..123739319,-#_20bea104bd41e6ba48905e4f72c8eb7cp@chr5:123739302..123739319, -
7.81e-75FFCP PHASE1:Hg19::chr5:123739302..123739319,-#_20bea104bd41e6ba48905e4f72c8eb7cp@chr5:123739302..123739319, -
1.01e-74FFCP PHASE1:Hg19::chr18:64271475..64271484,-#_f0b82ec19988fed25473bb8d8642cbfdp6@CDH19
1.01e-74FFCP PHASE2:Hg19::chr18:64271475..64271484,-#_f0b82ec19988fed25473bb8d8642cbfdp6@CDH19
1.29e-74FFCP PHASE1:Hg19::chr7:35286774..35286778,-#_1bc8cef6a014d443f2c705b7ef26e72cp@chr7:35286774..35286778, -
1.29e-74FFCP PHASE2:Hg19::chr7:35286774..35286778,-#_1bc8cef6a014d443f2c705b7ef26e72cp@chr7:35286774..35286778, -
1.66e-74FFCP PHASE1:Hg19::chr6:129355052..129355056,+#_73e0a379cc6886220ae179733e6cbf92p@chr6:129355052..129355056, +
1.66e-74FFCP PHASE2:Hg19::chr6:129355052..129355056,+#_73e0a379cc6886220ae179733e6cbf92p@chr6:129355052..129355056, +
2.75e-74FFCP PHASE2:Hg19::chr3:16940540..16940554,+#_db447ee5bedefe899340093f494e3a6fp@chr3:16940540..16940554, +
2.75e-74FFCP PHASE1:Hg19::chr3:16940540..16940554,+#_db447ee5bedefe899340093f494e3a6fp@chr3:16940540..16940554, +
3.54e-74FFCP PHASE1:Hg19::chr1:201328779..201328797,-#_00a8a94fcdfe33d311e007e4a6bcde18p@chr1:201328779..201328797, -
3.54e-74FFCP PHASE1:Hg19::chr3:131523446..131523459,-#_00a8a94fcdfe33d311e007e4a6bcde18p@chr3:131523446..131523459, -
3.54e-74FFCP PHASE2:Hg19::chr1:201328779..201328797,-#_00a8a94fcdfe33d311e007e4a6bcde18p@chr1:201328779..201328797, -
3.54e-74FFCP PHASE1:Hg19::chr20:33565465..33565475,+#_00a8a94fcdfe33d311e007e4a6bcde18p9@MYH7B
3.54e-74FFCP PHASE2:Hg19::chr3:131523446..131523459,-#_00a8a94fcdfe33d311e007e4a6bcde18p@chr3:131523446..131523459, -
3.54e-74FFCP PHASE1:Hg19::chr19:55661803..55661807,-#_00a8a94fcdfe33d311e007e4a6bcde18p@chr19:55661803..55661807, -
3.54e-74FFCP PHASE2:Hg19::chr20:33565465..33565475,+#_00a8a94fcdfe33d311e007e4a6bcde18p9@MYH7B
3.54e-74FFCP PHASE2:Hg19::chr19:55661803..55661807,-#_00a8a94fcdfe33d311e007e4a6bcde18p@chr19:55661803..55661807, -
5.84e-74FFCP PHASE1:Hg19::chr6:36812121..36812130,-#_45e51361054f87d20967ec9098bbf208p@chr6:36812121..36812130, -
5.84e-74FFCP PHASE2:Hg19::chr6:36812121..36812130,-#_45e51361054f87d20967ec9098bbf208p@chr6:36812121..36812130, -
7.51e-74FFCP PHASE1:Hg19::chr14:105939326..105939337,+#_c0d879369b5ba03cef510d2d494b3442p16@CRIP2
7.51e-74FFCP PHASE2:Hg19::chr14:105939326..105939337,+#_c0d879369b5ba03cef510d2d494b3442p16@CRIP2
9.64e-74FFCP PHASE1:Hg19::chr1:206838422..206838456,+#_91cae0d8e8af59cd728d99086e9a9e4fp@chr1:206838422..206838456, +
9.64e-74FFCP PHASE2:Hg19::chr1:206838422..206838456,+#_91cae0d8e8af59cd728d99086e9a9e4fp@chr1:206838422..206838456, +
1.24e-73FFCP PHASE1:Hg19::chr1:231983543..231983554,-#_45583beb3bb8367a25279867827e7e7dp@chr1:231983543..231983554, -
1.24e-73FFCP PHASE2:Hg19::chr1:231983543..231983554,-#_45583beb3bb8367a25279867827e7e7dp@chr1:231983543..231983554, -
1.54e-66FFCP PHASE2:Hg19::chr1:201328328..201328343,-#_c114849f01865f65f74b1395f2b70c48p@chr1:201328328..201328343, -
1.54e-66FFCP PHASE1:Hg19::chr1:201328328..201328343,-#_c114849f01865f65f74b1395f2b70c48p@chr1:201328328..201328343, -
1.71e-66FFCP PHASE1:Hg19::chr1:237214095..237214115,+#_7023d580ec9407182deaaeed7470411bp@chr1:237214095..237214115, +
1.71e-66FFCP PHASE2:Hg19::chr1:237214095..237214115,+#_7023d580ec9407182deaaeed7470411bp@chr1:237214095..237214115, +
1.71e-66FFCP PHASE1:Hg19::chr11:47367243..47367257,-#_7023d580ec9407182deaaeed7470411bp@chr11:47367243..47367257, -
1.71e-66FFCP PHASE2:Hg19::chr11:47367243..47367257,-#_7023d580ec9407182deaaeed7470411bp@chr11:47367243..47367257, -
2.39e-66FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_143f5505e254bb49505ca32a80b26d3dp@chr15:86272097..86272099, +
2.39e-66FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_143f5505e254bb49505ca32a80b26d3dp@chr10:92678409..92678410, -
2.39e-66FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_143f5505e254bb49505ca32a80b26d3dp@chr5:99390735..99390743, -
2.39e-66FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_143f5505e254bb49505ca32a80b26d3dp@chr15:86272097..86272099, +
2.39e-66FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_143f5505e254bb49505ca32a80b26d3dp@chr5:99390735..99390743, -
2.39e-66FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_143f5505e254bb49505ca32a80b26d3dp@chr10:92678409..92678410, -
2.4e-66FFCP PHASE1:Hg19::chr12:114886577..114886589,-#_4ef03d95d2ff29e0a365aacc21bf6ce4p@chr12:114886577..114886589, -
2.4e-66FFCP PHASE1:Hg19::chr1:237996521..237996532,+#_4ef03d95d2ff29e0a365aacc21bf6ce4p@chr1:237996521..237996532, +
2.4e-66FFCP PHASE2:Hg19::chr2:159976509..159976519,+#_4ef03d95d2ff29e0a365aacc21bf6ce4p@chr2:159976509..159976519, +
2.4e-66FFCP PHASE2:Hg19::chr1:237996521..237996532,+#_4ef03d95d2ff29e0a365aacc21bf6ce4p@chr1:237996521..237996532, +
2.4e-66FFCP PHASE1:Hg19::chr12:4735761..4735787,-#_4ef03d95d2ff29e0a365aacc21bf6ce4p@chr12:4735761..4735787, -
2.4e-66FFCP PHASE2:Hg19::chr12:114886577..114886589,-#_4ef03d95d2ff29e0a365aacc21bf6ce4p@chr12:114886577..114886589, -
2.4e-66FFCP PHASE1:Hg19::chr2:159976509..159976519,+#_4ef03d95d2ff29e0a365aacc21bf6ce4p@chr2:159976509..159976519, +
2.4e-66FFCP PHASE2:Hg19::chr12:4735761..4735787,-#_4ef03d95d2ff29e0a365aacc21bf6ce4p@chr12:4735761..4735787, -
2.41e-66FFCP PHASE1:Hg19::chr1:237207955..237207959,+#_550a3e0f4d59bd8bf8a8e4753d84075ap@chr1:237207955..237207959, +
2.41e-66FFCP PHASE1:Hg19::chr2:40480968..40480972,-#_550a3e0f4d59bd8bf8a8e4753d84075ap@chr2:40480968..40480972, -
2.41e-66FFCP PHASE2:Hg19::chr2:40480968..40480972,-#_550a3e0f4d59bd8bf8a8e4753d84075ap@chr2:40480968..40480972, -
2.41e-66FFCP PHASE2:Hg19::chr1:237207955..237207959,+#_550a3e0f4d59bd8bf8a8e4753d84075ap@chr1:237207955..237207959, +
3.01e-66FFCP PHASE1:Hg19::chr4:62999501..62999517,+#_a0c877e77078cb991da5b2aa92ad2530p@chr4:62999501..62999517, +
3.01e-66FFCP PHASE2:Hg19::chr4:62999501..62999517,+#_a0c877e77078cb991da5b2aa92ad2530p@chr4:62999501..62999517, +
3.35e-66FFCP PHASE2:Hg19::chr7:35253487..35253489,-#_6515379f42ac9a7a3613dec6c0a3925fp@chr7:35253487..35253489, -
3.35e-66FFCP PHASE2:Hg19::chr7:44178491..44178498,-#_6515379f42ac9a7a3613dec6c0a3925fp@chr7:44178491..44178498, -
3.35e-66FFCP PHASE1:Hg19::chr9:38650254..38650266,+#_6515379f42ac9a7a3613dec6c0a3925fp@chr9:38650254..38650266, +
3.35e-66FFCP PHASE1:Hg19::chr7:44179972..44179982,-#_6515379f42ac9a7a3613dec6c0a3925fp2@MYL7
3.35e-66FFCP PHASE1:Hg19::chr5:65736120..65736128,-#_6515379f42ac9a7a3613dec6c0a3925fp@chr5:65736120..65736128, -
3.35e-66FFCP PHASE1:Hg19::chr1:11905830..11905839,-#_6515379f42ac9a7a3613dec6c0a3925fp@chr1:11905830..11905839, -
3.35e-66FFCP PHASE2:Hg19::chr9:38650254..38650266,+#_6515379f42ac9a7a3613dec6c0a3925fp@chr9:38650254..38650266, +
3.35e-66FFCP PHASE2:Hg19::chr7:44179972..44179982,-#_6515379f42ac9a7a3613dec6c0a3925fp2@MYL7
3.35e-66FFCP PHASE2:Hg19::chr1:11905830..11905839,-#_6515379f42ac9a7a3613dec6c0a3925fp@chr1:11905830..11905839, -
3.35e-66FFCP PHASE2:Hg19::chr5:65736120..65736128,-#_6515379f42ac9a7a3613dec6c0a3925fp@chr5:65736120..65736128, -
3.35e-66FFCP PHASE1:Hg19::chr7:35253487..35253489,-#_6515379f42ac9a7a3613dec6c0a3925fp@chr7:35253487..35253489, -
3.35e-66FFCP PHASE1:Hg19::chr7:44178491..44178498,-#_6515379f42ac9a7a3613dec6c0a3925fp@chr7:44178491..44178498, -
4.68e-66FFCP PHASE2:Hg19::chr10:112524543..112524547,+#_8b4c4ab381a444b7d40f04f52bd9d844p@chr10:112524543..112524547, +
4.68e-66FFCP PHASE1:Hg19::chr7:44180643..44180652,-#_8b4c4ab381a444b7d40f04f52bd9d844p3@MYL7
4.68e-66FFCP PHASE1:Hg19::chr10:112524543..112524547,+#_8b4c4ab381a444b7d40f04f52bd9d844p@chr10:112524543..112524547, +
4.68e-66FFCP PHASE2:Hg19::chr7:44180643..44180652,-#_8b4c4ab381a444b7d40f04f52bd9d844p3@MYL7
5.88e-66FFCP PHASE1:Hg19::chr6:36812225..36812238,-#_ed9cca3ae049e6f9823074663748bfa5p@chr6:36812225..36812238, -
5.88e-66FFCP PHASE2:Hg19::chr6:36812225..36812238,-#_ed9cca3ae049e6f9823074663748bfa5p@chr6:36812225..36812238, -
6.53e-66FFCP PHASE1:Hg19::chr2:168104544..168104551,+#_16dcfa8d34cc5782d5790de64aa78291p52@XIRP2
6.53e-66FFCP PHASE2:Hg19::chr2:168104544..168104551,+#_16dcfa8d34cc5782d5790de64aa78291p52@XIRP2
6.53e-66FFCP PHASE1:Hg19::chr4:62999459..62999462,+#_16dcfa8d34cc5782d5790de64aa78291p@chr4:62999459..62999462, +
6.53e-66FFCP PHASE2:Hg19::chr4:62999459..62999462,+#_16dcfa8d34cc5782d5790de64aa78291p@chr4:62999459..62999462, +
1.15e-65FFCP PHASE1:Hg19::chr7:123302841..123302854,+#_1d520b1fe38be1b16944dcf85b2def98p@chr7:123302841..123302854, +
1.15e-65FFCP PHASE2:Hg19::chrX:121555838..121555874,+#_1d520b1fe38be1b16944dcf85b2def98p@chrX:121555838..121555874, +
1.15e-65FFCP PHASE2:Hg19::chr10:127569398..127569410,-#_1d520b1fe38be1b16944dcf85b2def98p5@DHX32
1.15e-65FFCP PHASE2:Hg19::chr7:123302841..123302854,+#_1d520b1fe38be1b16944dcf85b2def98p@chr7:123302841..123302854, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Layer that lines the lumen of the heart.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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