Personal tools

UBERON:0002167: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002167
|alt_id=UBERON:FMA_7309-MA_0000426
|name=right lung
|namespace=
|def="Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [FMA:FMA, Wikipedia:Right_lung]
|xref=EHDAA2:0001730;;EHDAA:4969;;EMAPA:17661;;FMA:7309;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png;;MA:0000426;;ncithesaurus:Right_Lung;;OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA;;SCTID:361967000;;VHOG:0000301
|is_a=UBERON:0002048
|synonym=
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_7309-MA_0000426
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [FMA:FMA, Wikipedia:Right_lung]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002167
|is_a=UBERON:0002048
|is_obsolete=
|located_in=
|located_in=
|name=right lung
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0001730;;EHDAA:4969;;EMAPA:17661;;FMA:7309;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png;;MA:0000426;;ncithesaurus:Right_Lung;;OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA;;SCTID:361967000;;VHOG:0000301
}}
}}

Latest revision as of 17:27, 12 September 2014

Name:right lung
Namespace:FANTOM
Definition:"Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [FMA:FMA, Wikipedia:Right_lung]
Xrefs:
links:

EHDAA2:0001730
EHDAA:4969
EMAPA:17661
FMA:7309
[ 200px-Gray972.png 200px-Gray972.png]
MA:0000426
ncithesaurus:Right_Lung
OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA
SCTID:361967000

VHOG:0000301
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7309-MA_0000426
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002048(lung)



Children

part of:UBERON:0002171 (lower lobe of right lung),UBERON:0006518 (right lung lobe)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002167 (right lung), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr2:85893058..85893063,-#_964793f75c4be687d330c3e24aa11d89p35@SFTPB
5.42e-195FFCP PHASE1:Hg19::chr8:22021803..22021813,-#_964793f75c4be687d330c3e24aa11d89p@chr8:22021803..22021813, -
5.42e-195FFCP PHASE2:Hg19::chr2:85884987..85884992,-#_964793f75c4be687d330c3e24aa11d89p@chr2:85884987..85884992, -
5.42e-195FFCP PHASE1:Hg19::chr2:85894638..85894644,+#_964793f75c4be687d330c3e24aa11d89p@chr2:85894638..85894644, +
5.42e-195FFCP PHASE2:Hg19::chr2:85894675..85894679,+#_964793f75c4be687d330c3e24aa11d89p@chr2:85894675..85894679, +
5.42e-195FFCP PHASE2:Hg19::chr2:211117597..211117606,+#_964793f75c4be687d330c3e24aa11d89p@chr2:211117597..211117606, +
5.42e-195FFCP PHASE1:Hg19::chr2:96331830..96331836,+#_964793f75c4be687d330c3e24aa11d89p1@ENST00000425887, p1@uc002suw.1
5.42e-195FFCP PHASE2:Hg19::chr10:81316872..81316887,+#_964793f75c4be687d330c3e24aa11d89p@chr10:81316872..81316887, +
5.42e-195FFCP PHASE1:Hg19::chr6:32148852..32148862,-#_964793f75c4be687d330c3e24aa11d89p@chr6:32148852..32148862, -
5.42e-195FFCP PHASE1:Hg19::chr2:85893058..85893063,-#_964793f75c4be687d330c3e24aa11d89p35@SFTPB
5.42e-195FFCP PHASE1:Hg19::chr2:85884987..85884992,-#_964793f75c4be687d330c3e24aa11d89p@chr2:85884987..85884992, -
5.42e-195FFCP PHASE2:Hg19::chr10:81374723..81374726,-#_964793f75c4be687d330c3e24aa11d89p@chr10:81374723..81374726, -
5.42e-195FFCP PHASE2:Hg19::chrX:93772866..93772868,-#_964793f75c4be687d330c3e24aa11d89p@chrX:93772866..93772868, -
5.42e-195FFCP PHASE2:Hg19::chr10:81316085..81316090,-#_964793f75c4be687d330c3e24aa11d89p@chr10:81316085..81316090, -
5.42e-195FFCP PHASE2:Hg19::chr8:22021803..22021813,-#_964793f75c4be687d330c3e24aa11d89p@chr8:22021803..22021813, -
5.42e-195FFCP PHASE1:Hg19::chr10:81316872..81316887,+#_964793f75c4be687d330c3e24aa11d89p@chr10:81316872..81316887, +
5.42e-195FFCP PHASE1:Hg19::chr2:85894675..85894679,+#_964793f75c4be687d330c3e24aa11d89p@chr2:85894675..85894679, +
5.42e-195FFCP PHASE1:Hg19::chr2:211117597..211117606,+#_964793f75c4be687d330c3e24aa11d89p@chr2:211117597..211117606, +
5.42e-195FFCP PHASE2:Hg19::chr2:85894638..85894644,+#_964793f75c4be687d330c3e24aa11d89p@chr2:85894638..85894644, +
5.42e-195FFCP PHASE1:Hg19::chr10:81374723..81374726,-#_964793f75c4be687d330c3e24aa11d89p@chr10:81374723..81374726, -
5.42e-195FFCP PHASE2:Hg19::chr2:96331830..96331836,+#_964793f75c4be687d330c3e24aa11d89p1@ENST00000425887, p1@uc002suw.1
5.42e-195FFCP PHASE1:Hg19::chrX:93772866..93772868,-#_964793f75c4be687d330c3e24aa11d89p@chrX:93772866..93772868, -
5.42e-195FFCP PHASE1:Hg19::chr10:81316085..81316090,-#_964793f75c4be687d330c3e24aa11d89p@chr10:81316085..81316090, -
5.42e-195FFCP PHASE2:Hg19::chr6:32148852..32148862,-#_964793f75c4be687d330c3e24aa11d89p@chr6:32148852..32148862, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316558..81316565,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316558..81316565, -
9.37e-99FFCP PHASE2:Hg19::chr2:85894661..85894668,+#_2707824edac9fde57088b3da20ef783ap@chr2:85894661..85894668, +
9.37e-99FFCP PHASE1:Hg19::chr8:22020085..22020093,+#_2707824edac9fde57088b3da20ef783ap12@SFTPC
9.37e-99FFCP PHASE1:Hg19::chr10:81315944..81315951,-#_2707824edac9fde57088b3da20ef783ap@chr10:81315944..81315951, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374331..81374339,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374331..81374339, +
9.37e-99FFCP PHASE2:Hg19::chr6:32150708..32150711,-#_2707824edac9fde57088b3da20ef783ap7@AGER
9.37e-99FFCP PHASE2:Hg19::chr2:85886515..85886520,-#_2707824edac9fde57088b3da20ef783ap@chr2:85886515..85886520, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316764..81316776,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316764..81316776, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316132..81316137,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316132..81316137, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374462..81374469,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374462..81374469, +
9.37e-99FFCP PHASE2:Hg19::chr8:22021526..22021532,+#_2707824edac9fde57088b3da20ef783ap@chr8:22021526..22021532, +
9.37e-99FFCP PHASE1:Hg19::chr10:81374587..81374595,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374587..81374595, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316023..81316032,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316023..81316032, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021482..22021493,+#_2707824edac9fde57088b3da20ef783ap@chr8:22021482..22021493, +
9.37e-99FFCP PHASE2:Hg19::chr6:32148869..32148878,-#_2707824edac9fde57088b3da20ef783ap@chr6:32148869..32148878, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316753..81316759,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316753..81316759, -
9.37e-99FFCP PHASE1:Hg19::chr2:85892915..85892916,-#_2707824edac9fde57088b3da20ef783ap40@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr8:22021903..22021951,-#_2707824edac9fde57088b3da20ef783ap@chr8:22021903..22021951, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374752..81374761,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374752..81374761, +
9.37e-99FFCP PHASE2:Hg19::chr8:22020994..22020998,+#_2707824edac9fde57088b3da20ef783ap@chr8:22020994..22020998, +
9.37e-99FFCP PHASE1:Hg19::chr3:127109563..127109564,-#_2707824edac9fde57088b3da20ef783ap2@ENST00000488425, p2@uc003ejj.2
9.37e-99FFCP PHASE1:Hg19::chr10:23631651..23631656,+#_2707824edac9fde57088b3da20ef783ap@chr10:23631651..23631656, +
9.37e-99FFCP PHASE1:Hg19::chr6:117746871..117746882,-#_2707824edac9fde57088b3da20ef783ap10@ROS1
9.37e-99FFCP PHASE1:Hg19::chr2:85885348..85885355,-#_2707824edac9fde57088b3da20ef783ap@chr2:85885348..85885355, -
9.37e-99FFCP PHASE2:Hg19::chr2:85892885..85892890,-#_2707824edac9fde57088b3da20ef783ap23@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr10:81316558..81316565,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316558..81316565, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374819..81374828,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374819..81374828, +
9.37e-99FFCP PHASE1:Hg19::chr2:85889234..85889238,-#_2707824edac9fde57088b3da20ef783ap@chr2:85889234..85889238, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316041..81316047,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316041..81316047, -
9.37e-99FFCP PHASE2:Hg19::chr8:22020196..22020202,+#_2707824edac9fde57088b3da20ef783ap13@SFTPC
9.37e-99FFCP PHASE2:Hg19::chr6:32149013..32149018,-#_2707824edac9fde57088b3da20ef783ap@chr6:32149013..32149018, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316764..81316776,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316764..81316776, -
9.37e-99FFCP PHASE1:Hg19::chr2:85894661..85894668,+#_2707824edac9fde57088b3da20ef783ap@chr2:85894661..85894668, +
9.37e-99FFCP PHASE2:Hg19::chr2:85894689..85894696,+#_2707824edac9fde57088b3da20ef783ap@chr2:85894689..85894696, +
9.37e-99FFCP PHASE1:Hg19::chr6:32150708..32150711,-#_2707824edac9fde57088b3da20ef783ap7@AGER
9.37e-99FFCP PHASE1:Hg19::chr10:81316023..81316032,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316023..81316032, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374313..81374327,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374313..81374327, +
9.37e-99FFCP PHASE2:Hg19::chr8:22021454..22021463,+#_2707824edac9fde57088b3da20ef783ap@chr8:22021454..22021463, +
9.37e-99FFCP PHASE1:Hg19::chr10:81374462..81374469,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374462..81374469, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316910..81316917,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316910..81316917, -
9.37e-99FFCP PHASE1:Hg19::chr2:85886515..85886520,-#_2707824edac9fde57088b3da20ef783ap@chr2:85886515..85886520, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316311..81316313,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316311..81316313, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021526..22021532,+#_2707824edac9fde57088b3da20ef783ap@chr8:22021526..22021532, +
9.37e-99FFCP PHASE1:Hg19::chr6:32148869..32148878,-#_2707824edac9fde57088b3da20ef783ap@chr6:32148869..32148878, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374819..81374828,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374819..81374828, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316041..81316047,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316041..81316047, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374331..81374339,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374331..81374339, +
9.37e-99FFCP PHASE2:Hg19::chr8:22021482..22021493,+#_2707824edac9fde57088b3da20ef783ap@chr8:22021482..22021493, +
9.37e-99FFCP PHASE2:Hg19::chr10:81315944..81315951,-#_2707824edac9fde57088b3da20ef783ap@chr10:81315944..81315951, -
9.37e-99FFCP PHASE1:Hg19::chr8:22020994..22020998,+#_2707824edac9fde57088b3da20ef783ap@chr8:22020994..22020998, +
9.37e-99FFCP PHASE2:Hg19::chr8:22020085..22020093,+#_2707824edac9fde57088b3da20ef783ap12@SFTPC
9.37e-99FFCP PHASE2:Hg19::chr2:85892915..85892916,-#_2707824edac9fde57088b3da20ef783ap40@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr2:85892885..85892890,-#_2707824edac9fde57088b3da20ef783ap23@SFTPB
9.37e-99FFCP PHASE2:Hg19::chr10:81316132..81316137,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316132..81316137, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374587..81374595,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374587..81374595, +
9.37e-99FFCP PHASE2:Hg19::chr8:22021903..22021951,-#_2707824edac9fde57088b3da20ef783ap@chr8:22021903..22021951, -
9.37e-99FFCP PHASE1:Hg19::chr6:32149013..32149018,-#_2707824edac9fde57088b3da20ef783ap@chr6:32149013..32149018, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374313..81374327,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374313..81374327, +
9.37e-99FFCP PHASE1:Hg19::chr8:22020196..22020202,+#_2707824edac9fde57088b3da20ef783ap13@SFTPC
9.37e-99FFCP PHASE2:Hg19::chr10:81316753..81316759,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316753..81316759, -
9.37e-99FFCP PHASE2:Hg19::chr3:127109563..127109564,-#_2707824edac9fde57088b3da20ef783ap2@ENST00000488425, p2@uc003ejj.2
9.37e-99FFCP PHASE1:Hg19::chr10:81316910..81316917,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316910..81316917, -
9.37e-99FFCP PHASE1:Hg19::chr2:85894689..85894696,+#_2707824edac9fde57088b3da20ef783ap@chr2:85894689..85894696, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316311..81316313,-#_2707824edac9fde57088b3da20ef783ap@chr10:81316311..81316313, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374752..81374761,+#_2707824edac9fde57088b3da20ef783ap@chr10:81374752..81374761, +
9.37e-99FFCP PHASE2:Hg19::chr6:117746871..117746882,-#_2707824edac9fde57088b3da20ef783ap10@ROS1
9.37e-99FFCP PHASE2:Hg19::chr2:85885348..85885355,-#_2707824edac9fde57088b3da20ef783ap@chr2:85885348..85885355, -
9.37e-99FFCP PHASE2:Hg19::chr2:85889234..85889238,-#_2707824edac9fde57088b3da20ef783ap@chr2:85889234..85889238, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021454..22021463,+#_2707824edac9fde57088b3da20ef783ap@chr8:22021454..22021463, +
9.37e-99FFCP PHASE2:Hg19::chr10:23631651..23631656,+#_2707824edac9fde57088b3da20ef783ap@chr10:23631651..23631656, +
2.55e-98FFCP PHASE1:Hg19::chr10:81316679..81316685,+#_1049a27d94a6282cfd715c4de55079d5p@chr10:81316679..81316685, +
2.55e-98FFCP PHASE1:Hg19::chr4:173916869..173916878,-#_1049a27d94a6282cfd715c4de55079d5p3@uc003isx.1
2.55e-98FFCP PHASE1:Hg19::chr2:85894747..85894754,-#_1049a27d94a6282cfd715c4de55079d5p@chr2:85894747..85894754, -
2.55e-98FFCP PHASE2:Hg19::chr6:8358321..8358327,+#_1049a27d94a6282cfd715c4de55079d5p@chr6:8358321..8358327, +
2.55e-98FFCP PHASE1:Hg19::chr14:36921583..36921586,+#_1049a27d94a6282cfd715c4de55079d5p@chr14:36921583..36921586, +
2.55e-98FFCP PHASE1:Hg19::chr12:96223975..96224010,-#_1049a27d94a6282cfd715c4de55079d5p@chr12:96223975..96224010, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002167&oldid=3277391"