UBERON:0002203: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_74743-ZFA_0007057 | ||
|comment=not part of the eye in ZFA. Note this changed to a blood vessel in ZFA | |comment=not part of the eye in ZFA. Note this changed to a blood vessel in ZFA | ||
|created_by= | |created_by= | ||
| | |def="Vasculature that is part of the eye region." [https://sourceforge.net/tracker/?func | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0003314 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002203 | |||
|is_a=UBERON:0002200 ;;UBERON:0006876 ;;UBERON:0010313 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=vasculature of eye | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000019 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=vertebrate_core | ||
| | |synonym="eye vascular network" EXACT [OBOL:automatic];;"eye vasculature" RELATED [];;"ocular blood vessel" EXACT [ZFA:0007057];;"ocular vasculature" EXACT [];;"optic vasculature" RELATED [];;"vascular network of eye" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=FMA:74743;;SCTID:123846009;;TAO:0007057;;ZFA:0007057 | |||
}} | }} | ||
Latest revision as of 17:27, 12 September 2014
| Name: | vasculature of eye | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Vasculature that is part of the eye region." [https://sourceforge.net/tracker/?func | ||
| Xrefs: |
| ||
| Synonyms: |
"eye vascular network" EXACT [OBOL:automatic] "eye vasculature" RELATED [] "ocular blood vessel" EXACT [ZFA:0007057] "ocular vasculature" EXACT [] "optic vasculature" RELATED [] "vascular network of eye" EXACT [OBOL:automatic] | ||
| Comments: | not part of the eye in ZFA. Note this changed to a blood vessel in ZFA | ||
| Alt_id: | UBERON:FMA_74743-ZFA_0007057 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002200(vasculature of head),UBERON:0006876(vasculature of organ),UBERON:0010313(neural crest-derived structure) |
|---|---|
| develops_from: | UBERON:0003314(eye mesenchyme) |
| part_of: | UBERON:0000019(camera-type eye) |
Children
| is a: | UBERON:0001768 (uvea) |
|---|---|
| part of: | UBERON:0005606 (hyaloid cavity) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11532-120A2 (Trabecular Meshwork Cells, donor1)
- 11610-120I8
- 11612-122A1 (Trabecular Meshwork Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002203 (vasculature of eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.51e-104 | FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_9e7666b1807df12b80785c5fba33b0c5 | p@chrX:106198807..106198826, - |
| 1.51e-104 | FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_9e7666b1807df12b80785c5fba33b0c5 | p@chrX:106198807..106198826, - |
| 2.17e-75 | FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_f2d845d926db7edcee852647cbca913d | p1@BC033145 |
| 2.17e-75 | FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_f2d845d926db7edcee852647cbca913d | p1@BC033145 |
| 2.58e-74 | FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_ee1df5339031d3809d1935cc1270b0be | p@chr7:115723897..115723915, - |
| 2.58e-74 | FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_ee1df5339031d3809d1935cc1270b0be | p@chr7:115723897..115723915, - |
| 4.26e-74 | FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_c6c9de377eb89df4754bc03fedc34e85 | p@chr12:97856211..97856221, + |
| 4.26e-74 | FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_c6c9de377eb89df4754bc03fedc34e85 | p@chr12:97856211..97856221, + |
| 8.15e-60 | FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_6d35e3742a257168a0c61f0b8b68c9a8 | p@chr7:115723925..115723935, - |
| 8.15e-60 | FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_6d35e3742a257168a0c61f0b8b68c9a8 | p@chr7:115723925..115723935, - |
| 9.96e-60 | FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_cb9249c64f2cc76e50c13d5731e1ade6 | p@chr2:35680607..35680613, - |
| 9.96e-60 | FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_cb9249c64f2cc76e50c13d5731e1ade6 | p@chr2:35680607..35680613, - |
| 1.49e-59 | FFCP PHASE2:Hg19::chr8:41119800..41119811,-#_cea760cc3a35c68a2cc59120046e153e | p5@SFRP1 |
| 1.49e-59 | FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_cea760cc3a35c68a2cc59120046e153e | p@chr13:36052762..36052767, - |
| 1.49e-59 | FFCP PHASE1:Hg19::chr8:41119800..41119811,-#_cea760cc3a35c68a2cc59120046e153e | p5@SFRP1 |
| 1.49e-59 | FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_cea760cc3a35c68a2cc59120046e153e | p@chr13:36052762..36052767, - |
| 1.82e-59 | FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_2662f6f8044dac125e5991d930ba0b20 | p@chr7:131803806..131803815, + |
| 1.82e-59 | FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_2662f6f8044dac125e5991d930ba0b20 | p@chr7:131803806..131803815, + |
| 2.72e-59 | FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_2d790e46dd8c84cd1bf0c2cf3920a4d9 | p@chr16:58896129..58896134, - |
| 2.72e-59 | FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_2d790e46dd8c84cd1bf0c2cf3920a4d9 | p@chr16:58896129..58896134, - |
| 1.03e-52 | FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_eb8b8bdf169652923787ae1beff86cd2 | p1@CLRN1 |
| 1.03e-52 | FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_eb8b8bdf169652923787ae1beff86cd2 | p1@CLRN1 |
| 2.01e-52 | FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_8ca22e84891789bd1f24fa5ea8cc1de5 | p@chr8:124692287..124692298, + |
| 2.01e-52 | FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_8ca22e84891789bd1f24fa5ea8cc1de5 | p@chr8:124692287..124692298, + |
| 3.84e-50 | FFCP PHASE2:Hg19::chr14:61654180..61654191,+#_e3eb6de988bab047e36cfa6710d1a38e | p33@PRKCH |
| 3.84e-50 | FFCP PHASE1:Hg19::chr14:61654180..61654191,+#_e3eb6de988bab047e36cfa6710d1a38e | p33@PRKCH |
| 7.51e-50 | FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_5db2934cb2d25af81580b9b9eb0fdecf | p2@RIPPLY1 |
| 7.51e-50 | FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_5db2934cb2d25af81580b9b9eb0fdecf | p2@RIPPLY1 |
| 9.31e-45 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_a0b7b5cdaad747918d84481d16d1443b | p7@PTPRU |
| 9.31e-45 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_a0b7b5cdaad747918d84481d16d1443b | p7@PTPRU |
| 9.76e-45 | FFCP PHASE2:Hg19::chr2:210798666..210798677,+#_e0b9ea1a4e19a3377ad4e2cefc76ee82 | p@chr2:210798666..210798677, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr2:210798666..210798677,+#_e0b9ea1a4e19a3377ad4e2cefc76ee82 | p@chr2:210798666..210798677, + |
| 9.76e-45 | FFCP PHASE2:Hg19::chr5:78112479..78112482,+#_e0b9ea1a4e19a3377ad4e2cefc76ee82 | p@chr5:78112479..78112482, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr5:78112479..78112482,+#_e0b9ea1a4e19a3377ad4e2cefc76ee82 | p@chr5:78112479..78112482, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_83e1330f659063ea530f142f0b536374 | p@chr13:36052713..36052724, - |
| 1.52e-44 | FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_83e1330f659063ea530f142f0b536374 | p@chr13:36052713..36052724, - |
| 4.21e-43 | FFCP PHASE2:Hg19::chr11:27240276..27240289,-#_6dc77548bdb9605253a2009551618bdb | p1@ENST00000526061 |
| 4.21e-43 | FFCP PHASE1:Hg19::chr11:27240276..27240289,-#_6dc77548bdb9605253a2009551618bdb | p1@ENST00000526061 |
| 6.48e-43 | FFCP PHASE2:Hg19::chr10:91294399..91294401,-#_b7b09f41b75539eccfff8e01916076e1 | p@chr10:91294399..91294401, - |
| 6.48e-43 | FFCP PHASE1:Hg19::chr10:91294399..91294401,-#_b7b09f41b75539eccfff8e01916076e1 | p@chr10:91294399..91294401, - |
| 9.96e-43 | FFCP PHASE2:Hg19::chr7:43417422..43417435,+#_07011878b60eef77216076b2d36f1d9b | p16@HECW1 |
| 9.96e-43 | FFCP PHASE1:Hg19::chr7:43417422..43417435,+#_07011878b60eef77216076b2d36f1d9b | p16@HECW1 |
| 4.07e-42 | FFCP PHASE2:Hg19::chr22:31536360..31536389,-#_c82c16401b8b6a59099ae4e11886ee87 | p4@PLA2G3 |
| 4.07e-42 | FFCP PHASE1:Hg19::chr22:31536360..31536389,-#_c82c16401b8b6a59099ae4e11886ee87 | p4@PLA2G3 |
| 2.21e-41 | FFCP PHASE2:Hg19::chr2:66670833..66670853,+#_a4088825a94f3f8ba1c779969f09ef24 | p@chr2:66670833..66670853, + |
| 2.21e-41 | FFCP PHASE1:Hg19::chr2:66670833..66670853,+#_a4088825a94f3f8ba1c779969f09ef24 | p@chr2:66670833..66670853, + |
| 3.35e-41 | FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_3c0acaa20098590cb00aa541ac386198 | p1@OPTC |
| 3.35e-41 | FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_3c0acaa20098590cb00aa541ac386198 | p1@OPTC |
| 4.56e-41 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_b79e6a2c4a1e066a7b17871f5198d116 | p3@SIX6 |
| 4.56e-41 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_b79e6a2c4a1e066a7b17871f5198d116 | p3@SIX6 |
| 1.28e-40 | FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_799242183152ae722107d4a25dc5021c | p8@NBEA |
| 1.28e-40 | FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_799242183152ae722107d4a25dc5021c | p8@NBEA |
| 1.92e-40 | FFCP PHASE2:Hg19::chr14:68569696..68569698,-#_8804ea3e0d73e55e4c8051bdc106f122 | p@chr14:68569696..68569698, - |
| 1.92e-40 | FFCP PHASE1:Hg19::chr14:68569696..68569698,-#_8804ea3e0d73e55e4c8051bdc106f122 | p@chr14:68569696..68569698, - |
| 2.55e-38 | FFCP PHASE2:Hg19::chr14:80892074..80892111,-#_27732ef68f6140a8a801bd89052dcd4e | p@chr14:80892074..80892111, - |
| 2.55e-38 | FFCP PHASE1:Hg19::chr14:80892074..80892111,-#_27732ef68f6140a8a801bd89052dcd4e | p@chr14:80892074..80892111, - |
| 4.9e-38 | FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_a7752e0ae4aef663aefb2a5b37d70a99 | p3@ENST00000437916 |
| 4.9e-38 | FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_a7752e0ae4aef663aefb2a5b37d70a99 | p3@ENST00000437916 |
| 9.19e-38 | FFCP PHASE2:Hg19::chr8:94713146..94713159,+#_2e685494e3e28db152e34f46f0fa5858 | p8@FAM92A1 |
| 9.19e-38 | FFCP PHASE1:Hg19::chr8:94713146..94713159,+#_2e685494e3e28db152e34f46f0fa5858 | p8@FAM92A1 |
| 1.07e-37 | FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_3d3d671d9e71a00e44386a18a906449b | p1@ENST00000448923 |
| 1.07e-37 | FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_3d3d671d9e71a00e44386a18a906449b | p1@ENST00000448923 |
| 1.18e-37 | FFCP PHASE1:Hg19::chr4:183006122..183006131,-#_2ebbb0b9215cb52e5f95034d6baa23fd | p3@ENST00000505537 |
| 1.18e-37 | FFCP PHASE2:Hg19::chr4:183006122..183006131,-#_2ebbb0b9215cb52e5f95034d6baa23fd | p3@ENST00000505537 |
| 5.61e-36 | FFCP PHASE2:Hg19::chr8:99076582..99076599,+#_304156ad8d4ab27bd40d9d524474d547 | p6@C8orf47 |
| 5.61e-36 | FFCP PHASE1:Hg19::chr8:99076582..99076599,+#_304156ad8d4ab27bd40d9d524474d547 | p6@C8orf47 |
| 2.8e-35 | FFCP PHASE2:Hg19::chr4:77356957..77356973,+#_d58e62b4ee5383498203718c9734a8a8 | p20@SHROOM3 |
| 2.8e-35 | FFCP PHASE1:Hg19::chr4:77356957..77356973,+#_d58e62b4ee5383498203718c9734a8a8 | p20@SHROOM3 |
| 4.14e-34 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_63a5214cad712f9845db052501f8a2a5 | p10@NLGN1 |
| 4.14e-34 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_63a5214cad712f9845db052501f8a2a5 | p10@NLGN1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr19:30716539..30716546,+#_f76fea5b0741fec202b711507447a48f | p@chr19:30716539..30716546, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:63196015..63196016,+#_f76fea5b0741fec202b711507447a48f | p@chr2:63196015..63196016, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr19:30716539..30716546,+#_f76fea5b0741fec202b711507447a48f | p@chr19:30716539..30716546, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr2:63196015..63196016,+#_f76fea5b0741fec202b711507447a48f | p@chr2:63196015..63196016, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr1:218579326..218579337,+#_e2c7c2a770e8978b13f64dfa173bfa8a | p@chr1:218579326..218579337, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr1:218579326..218579337,+#_e2c7c2a770e8978b13f64dfa173bfa8a | p@chr1:218579326..218579337, + |
| 6.72e-34 | FFCP PHASE2:Hg19::chr3:110846331..110846333,+#_317bfa8d0b054c21d0a6e40044da5c51 | p@chr3:110846331..110846333, + |
| 6.72e-34 | FFCP PHASE1:Hg19::chr3:110846331..110846333,+#_317bfa8d0b054c21d0a6e40044da5c51 | p@chr3:110846331..110846333, + |
| 7.07e-34 | FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_05432fbefd6745c5a17189f9a2fb93d7 | p3@BC033145 |
| 7.07e-34 | FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_05432fbefd6745c5a17189f9a2fb93d7 | p3@BC033145 |
| 7.51e-34 | FFCP PHASE2:Hg19::chr2:237677787..237677800,+#_305101a756a26eddd3b5e3eb21fac211 | p@chr2:237677787..237677800, + |
| 7.51e-34 | FFCP PHASE1:Hg19::chr2:237677787..237677800,+#_305101a756a26eddd3b5e3eb21fac211 | p@chr2:237677787..237677800, + |
| 8.35e-34 | FFCP PHASE2:Hg19::chr15:79501729..79501736,+#_53327306d838481a8f90e0bbaf3acec6 | p1@MIR184 |
| 8.35e-34 | FFCP PHASE1:Hg19::chr15:79501729..79501736,+#_53327306d838481a8f90e0bbaf3acec6 | p1@MIR184 |
| 9.39e-34 | FFCP PHASE2:Hg19::chr11:89224826..89224839,-#_58a6847d861895f2e11b2aafc81154fb | p14@NOX4 |
| 9.39e-34 | FFCP PHASE1:Hg19::chr11:89224826..89224839,-#_58a6847d861895f2e11b2aafc81154fb | p14@NOX4 |
| 9.87e-34 | FFCP PHASE2:Hg19::chr3:50191610..50191612,-#_0ee3a321c684e5a5a4fa889bcb6e55c3 | p@chr3:50191610..50191612, - |
| 9.87e-34 | FFCP PHASE1:Hg19::chr3:50191610..50191612,-#_0ee3a321c684e5a5a4fa889bcb6e55c3 | p@chr3:50191610..50191612, - |
| 1.17e-33 | FFCP PHASE2:Hg19::chr1:12416343..12416350,+#_4b260d1f00f3662d7edc67b157ea3103 | p@chr1:12416343..12416350, + |
| 1.17e-33 | FFCP PHASE1:Hg19::chr1:12416343..12416350,+#_4b260d1f00f3662d7edc67b157ea3103 | p@chr1:12416343..12416350, + |
| 1.17e-33 | FFCP PHASE1:Hg19::chrX:106142727..106142730,-#_4b260d1f00f3662d7edc67b157ea3103 | p@chrX:106142727..106142730, - |
| 1.17e-33 | FFCP PHASE2:Hg19::chrX:106142727..106142730,-#_4b260d1f00f3662d7edc67b157ea3103 | p@chrX:106142727..106142730, - |
| 1.17e-33 | FFCP PHASE2:Hg19::chr3:139258648..139258667,+#_4b260d1f00f3662d7edc67b157ea3103 | p1@ENST00000381790 |
| 1.17e-33 | FFCP PHASE1:Hg19::chr3:139258648..139258667,+#_4b260d1f00f3662d7edc67b157ea3103 | p1@ENST00000381790 |
| 3.98e-33 | FFCP PHASE2:Hg19::chr11:31816236..31816261,-#_a512b3850771883300ac1f49b37b402a | p@chr11:31816236..31816261, - |
| 3.98e-33 | FFCP PHASE1:Hg19::chr11:31816236..31816261,-#_a512b3850771883300ac1f49b37b402a | p@chr11:31816236..31816261, - |
| 9.74e-32 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_90b01f5edcd5550669627045950f2c2d | p10@SIX3 |
| 9.74e-32 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_90b01f5edcd5550669627045950f2c2d | p10@SIX3 |
| 1.14e-31 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_4390f58866368d8d962bf73d79388656 | p2@SIX6 |
| 1.14e-31 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_4390f58866368d8d962bf73d79388656 | p2@SIX6 |
