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{{UBERON
{{UBERON
|id=UBERON:0003826
|alt_id=
|name=upper leg bone
|namespace=
|def="A bone that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
|xref=MA:0000682
|is_a=UBERON:0005893
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bone that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003826
|is_a=UBERON:0005893
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=upper leg bone
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000376
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=MA:0000682
}}
}}

Latest revision as of 17:41, 12 September 2014

Name:upper leg bone
Namespace:FANTOM
Definition:"A bone that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000682

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005893(leg bone)
part_of:UBERON:0000376(hindlimb stylopod)



Children

is a:UBERON:0000981 (femur)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003826 (upper leg bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_69db48b7626f4cd3152229e6d0e832e7p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_69db48b7626f4cd3152229e6d0e832e7p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_139f9847ce85a80679c137785da91829p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_139f9847ce85a80679c137785da91829p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_139f9847ce85a80679c137785da91829p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_139f9847ce85a80679c137785da91829p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_139f9847ce85a80679c137785da91829p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_139f9847ce85a80679c137785da91829p@chr8:75097542..75097549, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_4658664ed97bf934706fd46d34537cd8p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_4658664ed97bf934706fd46d34537cd8p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_9f7932898a6d8dd02df50a72074a6b33p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_9f7932898a6d8dd02df50a72074a6b33p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_cdd6a5e499e54ac7b04be18ac83be62cp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_cdd6a5e499e54ac7b04be18ac83be62cp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_cdd6a5e499e54ac7b04be18ac83be62cp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_cdd6a5e499e54ac7b04be18ac83be62cp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_cdd6a5e499e54ac7b04be18ac83be62cp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_cdd6a5e499e54ac7b04be18ac83be62cp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_cdd6a5e499e54ac7b04be18ac83be62cp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_cdd6a5e499e54ac7b04be18ac83be62cp@chr11:67063327..67063335, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_e4f70f94b736ac98716cbb3c9faf649fp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_e4f70f94b736ac98716cbb3c9faf649fp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_4e87e9299b9b89d1680aec6c5b524d17p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_4e87e9299b9b89d1680aec6c5b524d17p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_8dd494143c61a4021a8ed83f7362efebp3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_8dd494143c61a4021a8ed83f7362efebp3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_cf8d2bda20f0730097aa7921aa315256p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_cf8d2bda20f0730097aa7921aa315256p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_5872115159aacd6e62a94d0fa124b247p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_5872115159aacd6e62a94d0fa124b247p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_f0fb4c6ce0a9249e55a688e4d9811babp2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_f0fb4c6ce0a9249e55a688e4d9811babp2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_af2f525cdd5317d8edc0757b789340a0p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_af2f525cdd5317d8edc0757b789340a0p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_42dae4731f7c2ea402da0cf2d8c213bap2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_42dae4731f7c2ea402da0cf2d8c213bap2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_42dae4731f7c2ea402da0cf2d8c213bap@chr1:166815111..166815121, -
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_42dae4731f7c2ea402da0cf2d8c213bap@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_f851c33d024385e14de80e69b58c0edcp4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_f851c33d024385e14de80e69b58c0edcp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_f851c33d024385e14de80e69b58c0edcp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_f851c33d024385e14de80e69b58c0edcp4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_1e8ca09c333ee8ec67c6b3fb65e511d5p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_1e8ca09c333ee8ec67c6b3fb65e511d5p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_30e1641b914fee9e6c1faeab023f30a3p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_30e1641b914fee9e6c1faeab023f30a3p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_30e1641b914fee9e6c1faeab023f30a3p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_30e1641b914fee9e6c1faeab023f30a3p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_60ec9465df70eae0e59d83122510624ep@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_60ec9465df70eae0e59d83122510624ep@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_22264998182ab5136ef71c193b943ee7p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_22264998182ab5136ef71c193b943ee7p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_22264998182ab5136ef71c193b943ee7p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_22264998182ab5136ef71c193b943ee7p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_578dcafcef2d0d6dccd77d958f8559e0p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_578dcafcef2d0d6dccd77d958f8559e0p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_ef7772cc039f255c6e8cbd8b18276214p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_ef7772cc039f255c6e8cbd8b18276214p2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_a1c6ab90df6652c6a3c2cb5506bc6a72p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_a1c6ab90df6652c6a3c2cb5506bc6a72p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_0d6406dcff4c7c7b5acfdd7095b27139p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_0d6406dcff4c7c7b5acfdd7095b27139p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_0944048767926346ac7c8c6be12354cbp@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_0944048767926346ac7c8c6be12354cbp1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_0944048767926346ac7c8c6be12354cbp1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_0944048767926346ac7c8c6be12354cbp@chr11:67056544..67056589, -
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_c9a7cec376aa30825075510f70199bacp@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_c9a7cec376aa30825075510f70199bacp@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_c9a7cec376aa30825075510f70199bacp@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_c9a7cec376aa30825075510f70199bacp@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_3162813a354be0e623d0832a2db15e4dp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_3162813a354be0e623d0832a2db15e4dp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_2f5a7b35b93bc61df2e8aa8ebcb4121bp@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_2f5a7b35b93bc61df2e8aa8ebcb4121bp@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_185308ef82116a27f2d61d3fbb6246fep@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_185308ef82116a27f2d61d3fbb6246fep@chr8:107702369..107702386, +
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_3eb8c6990ec930a0c863cde7bedd2260p1@Siglec15
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_3eb8c6990ec930a0c863cde7bedd2260p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_03d62ae4f11f330f2f3986faf1c06f64p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_03d62ae4f11f330f2f3986faf1c06f64p6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_be52bc89954258be277b4c054d3dab6ep7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_be52bc89954258be277b4c054d3dab6ep7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_2ed662e96bdf1aabf4b3b0c664f8ea55p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_2ed662e96bdf1aabf4b3b0c664f8ea55p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_2ed662e96bdf1aabf4b3b0c664f8ea55p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_2ed662e96bdf1aabf4b3b0c664f8ea55p@chr7:133592162..133592188, -
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_d00c055ea17e119ed0a51e70f83dcf67p4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_d00c055ea17e119ed0a51e70f83dcf67p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_4e702dd7e741aa1112bbb89b9a28d6d5p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_4e702dd7e741aa1112bbb89b9a28d6d5p1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_6bdc1d577ceedc13643d83585c9e448ep2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_6bdc1d577ceedc13643d83585c9e448ep@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_6bdc1d577ceedc13643d83585c9e448ep2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_6bdc1d577ceedc13643d83585c9e448ep@chr12:81581216..81581231, +
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_7f7f12e77a32bfd3ee5448c3ee744535p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_7f7f12e77a32bfd3ee5448c3ee744535p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_7f7f12e77a32bfd3ee5448c3ee744535p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_7f7f12e77a32bfd3ee5448c3ee744535p5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_7bd6e1b83ba2e7310e9aaf28060898eep@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_7bd6e1b83ba2e7310e9aaf28060898eep2@Siglec15

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