Personal tools

UBERON:0003915: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003915
|alt_id=
|name=endothelial tube
|namespace=
|def="Any endothelium that has the quality of being cylindrical [Obol]." [OBOL:automatic]
|xref=
|is_a=UBERON:0001986;;UBERON:0003914
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Any endothelium that has the quality of being cylindrical [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003915
|is_a=UBERON:0001986 ;;UBERON:0003914
|is_obsolete=
|located_in=
|located_in=
|name=endothelial tube
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:42, 12 September 2014

Name:endothelial tube
Namespace:FANTOM
Definition:"Any endothelium that has the quality of being cylindrical [Obol]." [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001986(endothelium),UBERON:0003914(epithelial tube)



Children

is a:UBERON:0001917 (endothelium of artery)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003915 (endothelial tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.95e-97FFCP PHASE2:Hg19::chr7:139741849..139741879,-#_5fa7f2728cdc5a43a12da848956d0b35p12@PARP12
5.95e-97FFCP PHASE1:Hg19::chr7:139741849..139741879,-#_5fa7f2728cdc5a43a12da848956d0b35p12@PARP12
2.32e-85FFCP PHASE1:Hg19::chr14:75469820..75469826,+#_092601dc3580b134cc478ebd716113a9p4@EIF2B2
2.32e-85FFCP PHASE2:Hg19::chr14:75469820..75469826,+#_092601dc3580b134cc478ebd716113a9p4@EIF2B2
1.21e-84FFCP PHASE1:Hg19::chr7:139741594..139741615,-#_c7d123ff1c91d2f66c06552737a75b76p5@PARP12
1.21e-84FFCP PHASE2:Hg19::chr7:139741594..139741615,-#_c7d123ff1c91d2f66c06552737a75b76p5@PARP12
4.66e-84FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_4ff1e8a8c48fd4f4158da5f393927f0cp@chr18:33046982..33046991, -
4.66e-84FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_4ff1e8a8c48fd4f4158da5f393927f0cp@chr18:33046982..33046991, -
6.47e-78FFCP PHASE2:Hg19::chr15:39722548..39722553,+#_e8cc91b391d62a560e45d4e6fff88d4cp@chr15:39722548..39722553, +
6.47e-78FFCP PHASE1:Hg19::chr15:39722548..39722553,+#_e8cc91b391d62a560e45d4e6fff88d4cp@chr15:39722548..39722553, +
9.17e-78FFCP PHASE2:Hg19::chr1:16076084..16076098,-#_91332ac7abd1c3c5698c3346b5238ea8p2@ENST00000418525
9.17e-78FFCP PHASE1:Hg19::chr1:16076084..16076098,-#_91332ac7abd1c3c5698c3346b5238ea8p2@ENST00000418525
9.22e-78FFCP PHASE2:Hg19::chr6:78171774..78171792,+#_80a524b080f59f063e2bd7f0483a8b81p@chr6:78171774..78171792, +
9.22e-78FFCP PHASE1:Hg19::chr6:78171774..78171792,+#_80a524b080f59f063e2bd7f0483a8b81p@chr6:78171774..78171792, +
7.03e-75FFCP PHASE2:Hg19::chr7:150329732..150329739,-#_57f2fd3759fc1cabc7d3e4d1a76500c7p8@GIMAP6
7.03e-75FFCP PHASE1:Hg19::chr7:150329732..150329739,-#_57f2fd3759fc1cabc7d3e4d1a76500c7p8@GIMAP6
2.33e-70FFCP PHASE2:Hg19::chr10:50153735..50153750,+#_e92097894933f295a0f0b0788da83cdep6@WDFY4
2.33e-70FFCP PHASE1:Hg19::chr10:50153735..50153750,+#_e92097894933f295a0f0b0788da83cdep6@WDFY4
1.41e-69FFCP PHASE1:Hg19::chr12:105863705..105863718,+#_2a3257fcb99a0503d1761181c6690472p@chr12:105863705..105863718, +
1.41e-69FFCP PHASE2:Hg19::chr12:105863705..105863718,+#_2a3257fcb99a0503d1761181c6690472p@chr12:105863705..105863718, +
7.13e-68FFCP PHASE1:Hg19::chr18:33047157..33047168,-#_8c4410c31a88a3ff994f37fa143298cfp@chr18:33047157..33047168, -
7.13e-68FFCP PHASE2:Hg19::chr18:33047157..33047168,-#_8c4410c31a88a3ff994f37fa143298cfp@chr18:33047157..33047168, -
1.55e-67FFCP PHASE2:Hg19::chr4:145566874..145566889,+#_8a300f6940a265cf6b1dd262bd582518p15@HHIP
1.55e-67FFCP PHASE1:Hg19::chr4:145566874..145566889,+#_8a300f6940a265cf6b1dd262bd582518p15@HHIP
3.99e-66FFCP PHASE2:Hg19::chr6:148664333..148664338,-#_4b98f939eed84e0343a7ca4f258c81f5p@chr6:148664333..148664338, -
3.99e-66FFCP PHASE2:Hg19::chr7:81662303..81662321,-#_4b98f939eed84e0343a7ca4f258c81f5p8@CACNA2D1
3.99e-66FFCP PHASE1:Hg19::chr6:148664333..148664338,-#_4b98f939eed84e0343a7ca4f258c81f5p@chr6:148664333..148664338, -
3.99e-66FFCP PHASE1:Hg19::chr7:81662303..81662321,-#_4b98f939eed84e0343a7ca4f258c81f5p8@CACNA2D1
1.07e-63FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_2a0ffb67c6dd931398b22bb78029de53p1@MIR216A
1.07e-63FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_2a0ffb67c6dd931398b22bb78029de53p1@MIR216A
2.57e-63FFCP PHASE2:Hg19::chr10:50153703..50153720,+#_26f3e23d509bffacf2de667b52ec92eep7@WDFY4
2.57e-63FFCP PHASE1:Hg19::chr10:50153703..50153720,+#_26f3e23d509bffacf2de667b52ec92eep7@WDFY4
4.08e-63FFCP PHASE2:Hg19::chr9:72118013..72118052,-#_e5c561074f72ba541ca90a8afdb5530fp@chr9:72118013..72118052, -
4.08e-63FFCP PHASE1:Hg19::chr9:72118013..72118052,-#_e5c561074f72ba541ca90a8afdb5530fp@chr9:72118013..72118052, -
2.64e-61FFCP PHASE2:Hg19::chr4:5035083..5035101,-#_ac2e66e72f3a37ad1f3f39342615e35ep@chr4:5035083..5035101, -
2.64e-61FFCP PHASE1:Hg19::chr4:5035083..5035101,-#_ac2e66e72f3a37ad1f3f39342615e35ep@chr4:5035083..5035101, -
8.67e-61FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_452012ed3d67a2fde966350ccd5ad82bp@chr11:124761247..124761258, -
8.67e-61FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_452012ed3d67a2fde966350ccd5ad82bp@chr11:124761247..124761258, -
1.6e-60FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_b6d3d0d379fcd0d4d7e855113520f1eap2@BMX
1.6e-60FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_b6d3d0d379fcd0d4d7e855113520f1eap2@BMX
2.52e-60FFCP PHASE1:Hg19::chr14:75422409..75422422,+#_0f9bbab4deda591d82c906743b2c19f1p@chr14:75422409..75422422, +
2.52e-60FFCP PHASE2:Hg19::chr14:75422409..75422422,+#_0f9bbab4deda591d82c906743b2c19f1p@chr14:75422409..75422422, +
1.11e-59FFCP PHASE2:Hg19::chr11:71640112..71640119,+#_ee1d99061e9194ea6c298fcf74aca7fcp3@RNF121
1.11e-59FFCP PHASE1:Hg19::chr11:71640112..71640119,+#_ee1d99061e9194ea6c298fcf74aca7fcp3@RNF121
3.78e-59FFCP PHASE2:Hg19::chr12:118112251..118112272,-#_97cc51345fb1aeffabb1f34ca4f35fb8p12@KSR2
3.78e-59FFCP PHASE1:Hg19::chr12:118112251..118112272,-#_97cc51345fb1aeffabb1f34ca4f35fb8p12@KSR2
2.5e-58FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_0f77f4fe8206aabe618f63835a4f7627p1@ENST00000513158
2.5e-58FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_0f77f4fe8206aabe618f63835a4f7627p1@ENST00000513158
6.73e-58FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_053fa5079a66fbccd5964ed29a6d1d11p@chr12:105863636..105863650, +
6.73e-58FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_053fa5079a66fbccd5964ed29a6d1d11p@chr12:105863636..105863650, +
8.2e-58FFCP PHASE2:Hg19::chr9:139543390..139543404,+#_f6a4bfd6f571c42d0e099197f53f4957p@chr9:139543390..139543404, +
8.2e-58FFCP PHASE1:Hg19::chr9:139543390..139543404,+#_f6a4bfd6f571c42d0e099197f53f4957p@chr9:139543390..139543404, +
1.9e-56FFCP PHASE1:Hg19::chrX:71299684..71299699,+#_a0f8a90779b5d06337e0068fc972b94cp@chrX:71299684..71299699, +
1.9e-56FFCP PHASE2:Hg19::chrX:71299684..71299699,+#_a0f8a90779b5d06337e0068fc972b94cp@chrX:71299684..71299699, +
2.07e-56FFCP PHASE2:Hg19::chr1:16076122..16076138,-#_ecb3b52a1f40c588bac0778dde4f52acp1@ENST00000418525
2.07e-56FFCP PHASE1:Hg19::chr1:16076122..16076138,-#_ecb3b52a1f40c588bac0778dde4f52acp1@ENST00000418525
1.05e-54FFCP PHASE2:Hg19::chr6:11607864..11607875,+#_2d5aba64b2c94bdbdf656e68d42d8bfbp@chr6:11607864..11607875, +
1.05e-54FFCP PHASE1:Hg19::chr6:11607864..11607875,+#_2d5aba64b2c94bdbdf656e68d42d8bfbp@chr6:11607864..11607875, +
1.58e-54FFCP PHASE1:Hg19::chr14:38725249..38725254,-#_c84d4851a25e59a97e340613436b7a3ap6@CLEC14A
1.58e-54FFCP PHASE2:Hg19::chr14:38725249..38725254,-#_c84d4851a25e59a97e340613436b7a3ap6@CLEC14A
2.45e-54FFCP PHASE1:Hg19::chr1:22264210..22264241,+#_3ad67215d18765f9f8475baeb4767316p@chr1:22264210..22264241, +
2.45e-54FFCP PHASE2:Hg19::chr1:22264210..22264241,+#_3ad67215d18765f9f8475baeb4767316p@chr1:22264210..22264241, +
3.02e-54FFCP PHASE1:Hg19::chr11:57543275..57543296,+#_a865faaab9c5a8fd98c0caf5b53dc5f2p@chr11:57543275..57543296, +
3.02e-54FFCP PHASE2:Hg19::chr11:57543275..57543296,+#_a865faaab9c5a8fd98c0caf5b53dc5f2p@chr11:57543275..57543296, +
1.83e-53FFCP PHASE2:Hg19::chr5:141337686..141337697,-#_d4babec27200469766654b05ac98e6b5p2@PCDH12
1.83e-53FFCP PHASE1:Hg19::chr5:141337686..141337697,-#_d4babec27200469766654b05ac98e6b5p2@PCDH12
1.53e-52FFCP PHASE2:Hg19::chr2:225266779..225266786,-#_84e6397311cc7caf94e386d0c75fed6cp4@FAM124B
1.53e-52FFCP PHASE1:Hg19::chr2:225266779..225266786,-#_84e6397311cc7caf94e386d0c75fed6cp4@FAM124B
2.14e-52FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_1f1a4e401828f73ca23c7d05a5371b46p@chr6:3753188..3753192, -
2.14e-52FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_1f1a4e401828f73ca23c7d05a5371b46p@chr6:3753188..3753192, -
2.19e-52FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_c9cfe6ceb5c807ac795ea156cb75b68bp@chr6:78171746..78171769, +
2.19e-52FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_c9cfe6ceb5c807ac795ea156cb75b68bp@chr6:78171746..78171769, +
2.46e-52FFCP PHASE2:Hg19::chr12:52300746..52300751,+#_62433918a47e33143e8cbdca93d5f438p10@ACVRL1
2.46e-52FFCP PHASE1:Hg19::chr12:52300746..52300751,+#_62433918a47e33143e8cbdca93d5f438p10@ACVRL1
2.89e-51FFCP PHASE2:Hg19::chr12:12491541..12491552,-#_526c07685de6d1c5e103c6375712e6dfp11@MANSC1
2.89e-51FFCP PHASE1:Hg19::chr12:12491541..12491552,-#_526c07685de6d1c5e103c6375712e6dfp11@MANSC1
1.07e-50FFCP PHASE1:Hg19::chr17:62084108..62084111,-#_372fafcba79168a0a1f491ae9cfc624ep5@ICAM2
1.07e-50FFCP PHASE2:Hg19::chr17:62084108..62084111,-#_372fafcba79168a0a1f491ae9cfc624ep5@ICAM2
1.43e-50FFCP PHASE2:Hg19::chr14:38725228..38725236,-#_f2579b61cd73f3eb9d80ee68cbcef9dfp5@CLEC14A
1.43e-50FFCP PHASE1:Hg19::chr14:38725228..38725236,-#_f2579b61cd73f3eb9d80ee68cbcef9dfp5@CLEC14A
1.7e-50FFCP PHASE2:Hg19::chr7:134779508..134779514,-#_d1451cbda270914a092e6a60be748ba1p@chr7:134779508..134779514, -
1.7e-50FFCP PHASE1:Hg19::chr7:134779508..134779514,-#_d1451cbda270914a092e6a60be748ba1p@chr7:134779508..134779514, -
2.79e-50FFCP PHASE2:Hg19::chrX:107068687..107068703,+#_e81cb898ab529a0bbd33438c091d8bd4p6@MID2
2.79e-50FFCP PHASE1:Hg19::chrX:107068687..107068703,+#_e81cb898ab529a0bbd33438c091d8bd4p6@MID2
2.88e-49FFCP PHASE2:Hg19::chr4:85791667..85791699,-#_444190bfc23292dae5fe645239b6792ep@chr4:85791667..85791699, -
2.88e-49FFCP PHASE1:Hg19::chr4:85791667..85791699,-#_444190bfc23292dae5fe645239b6792ep@chr4:85791667..85791699, -
1.86e-48FFCP PHASE2:Hg19::chr6:132455180..132455197,+#_438116eb15976cd7bf87fdbdea78e467p2@LOC100507254
1.86e-48FFCP PHASE1:Hg19::chr6:132455180..132455197,+#_438116eb15976cd7bf87fdbdea78e467p2@LOC100507254
2.08e-48FFCP PHASE1:Hg19::chr6:132455340..132455352,+#_205ea64c68dbf246c99af3c2715bb0cdp3@ENST00000443303
2.08e-48FFCP PHASE2:Hg19::chr6:132455340..132455352,+#_205ea64c68dbf246c99af3c2715bb0cdp3@ENST00000443303
2.61e-48FFCP PHASE2:Hg19::chr5:176433333..176433349,-#_e2364f6a58c224dd876e80fcfce04291p11@UIMC1
2.61e-48FFCP PHASE1:Hg19::chr5:176433333..176433349,-#_e2364f6a58c224dd876e80fcfce04291p11@UIMC1
4.28e-48FFCP PHASE2:Hg19::chr3:168959838..168959856,+#_8a8d5c1315896114e1990f57040b0b9bp@chr3:168959838..168959856, +
4.28e-48FFCP PHASE1:Hg19::chr3:168959838..168959856,+#_8a8d5c1315896114e1990f57040b0b9bp@chr3:168959838..168959856, +
5.38e-47FFCP PHASE1:Hg19::chr19:41985048..41985050,-#_554bb5d7d63f076c5caa9d99be01d849p@chr19:41985048..41985050, -
5.38e-47FFCP PHASE2:Hg19::chr19:41985048..41985050,-#_554bb5d7d63f076c5caa9d99be01d849p@chr19:41985048..41985050, -
1.09e-46FFCP PHASE1:Hg19::chr9:139543445..139543462,+#_ecc26685a6dc04132353cd02b0e54b3ep@chr9:139543445..139543462, +
1.09e-46FFCP PHASE2:Hg19::chr9:139543445..139543462,+#_ecc26685a6dc04132353cd02b0e54b3ep@chr9:139543445..139543462, +
1.57e-46FFCP PHASE2:Hg19::chr6:132455157..132455176,+#_5d863c8da77d6748bf721ffdb949e5f7p1@LOC100507254
1.57e-46FFCP PHASE1:Hg19::chr6:132455157..132455176,+#_5d863c8da77d6748bf721ffdb949e5f7p1@LOC100507254

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003915&oldid=3277598"