UBERON:0004381: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0004381
|name=skeleton of limb
|namespace=
|def="The collection of all skeletal elements in an individual limb." [UBERON:cjm]
|xref=EHDAA2:0002221
|i...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=Note that EHDAA2 considers hip and shoulder joints part of limb skeleton | |comment=Note that EHDAA2 considers hip and shoulder joints part of limb skeleton | ||
|created_by= | |created_by= | ||
| | |def="The collection of all skeletal elements in an individual limb." [UBERON:cjm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0003081 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004381 | |||
|is_a=UBERON:0010712 ;;UBERON:0011582 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=skeleton of limb | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002101 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="limb skeleton" EXACT [EHDAA2:0002221];;"set of bones of limb" EXACT [] | ||
|union_of= | |||
|xref=EHDAA2:0002221 | |||
}} | }} | ||
Latest revision as of 17:45, 12 September 2014
| Name: | skeleton of limb | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The collection of all skeletal elements in an individual limb." [UBERON:cjm] | ||
| Xrefs: |
| ||
| Synonyms: |
"limb skeleton" EXACT [EHDAA2:0002221] "set of bones of limb" EXACT [] | ||
| Comments: | Note that EHDAA2 considers hip and shoulder joints part of limb skeleton |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010712(limb skeleton subdivision),UBERON:0011582(paired limb/fin skeleton) |
|---|---|
| develops_from: | UBERON:0003081(lateral plate mesoderm) |
| part_of: | UBERON:0002101(limb) |
Children
| is a: | UBERON:0001441 (hindlimb skeleton) |
|---|---|
| part of: | UBERON:0002428 (limb bone),UBERON:0015061 (limb endochondral element) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004381 (skeleton of limb), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_3f999c0063dcc9a55e99e868a06fbe10 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_3f999c0063dcc9a55e99e868a06fbe10 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_9b9fb2d66ea6b3c47f3295e7f9b01f94 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_9b9fb2d66ea6b3c47f3295e7f9b01f94 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_9b9fb2d66ea6b3c47f3295e7f9b01f94 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_9b9fb2d66ea6b3c47f3295e7f9b01f94 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_9b9fb2d66ea6b3c47f3295e7f9b01f94 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_9b9fb2d66ea6b3c47f3295e7f9b01f94 | p@chr8:75097542..75097549, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_4a0d3691f6630e7f86b4590bf25ae81a | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_4a0d3691f6630e7f86b4590bf25ae81a | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_1b10b3dd1fc7856f31f3e0144e69e918 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_1b10b3dd1fc7856f31f3e0144e69e918 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_934b01d1e4fc84db2b163f93f845851a | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_934b01d1e4fc84db2b163f93f845851a | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_934b01d1e4fc84db2b163f93f845851a | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_934b01d1e4fc84db2b163f93f845851a | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_934b01d1e4fc84db2b163f93f845851a | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_934b01d1e4fc84db2b163f93f845851a | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_934b01d1e4fc84db2b163f93f845851a | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_934b01d1e4fc84db2b163f93f845851a | p@chr1:174140324..174140335, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_ff782d5060f684f4a3f9ab4a925ddc71 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_ff782d5060f684f4a3f9ab4a925ddc71 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_3c54bc6984e1572c15886ec744d5c595 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_3c54bc6984e1572c15886ec744d5c595 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_b298a42fffe1345e477e3a2a576946ea | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_b298a42fffe1345e477e3a2a576946ea | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_88c5d107ea0d8a43678a99b1b4134ddf | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_88c5d107ea0d8a43678a99b1b4134ddf | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_77ca8c935b74a16b4f1f36e389d79e9e | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_77ca8c935b74a16b4f1f36e389d79e9e | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_ec713f9c90ab6382c1bcf0b8c0c97436 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_ec713f9c90ab6382c1bcf0b8c0c97436 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_8738dfa2c4575b01e735a6894dcbeabe | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_8738dfa2c4575b01e735a6894dcbeabe | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_debc036e6c56c094ce63eb9e258d613c | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_debc036e6c56c094ce63eb9e258d613c | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_debc036e6c56c094ce63eb9e258d613c | p2@Oscar |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_debc036e6c56c094ce63eb9e258d613c | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_b5b4ac9aafd4656e1fc2f3e656c9bf7b | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_b5b4ac9aafd4656e1fc2f3e656c9bf7b | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_b5b4ac9aafd4656e1fc2f3e656c9bf7b | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_b5b4ac9aafd4656e1fc2f3e656c9bf7b | p4@Lipc |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_7cee15c65a9754709a9d2aadff184e81 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_7cee15c65a9754709a9d2aadff184e81 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_aab1796c3179d0edecc2cb657c6a40c8 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_aab1796c3179d0edecc2cb657c6a40c8 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_aab1796c3179d0edecc2cb657c6a40c8 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_aab1796c3179d0edecc2cb657c6a40c8 | p@chr8:126415826..126415839, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_519254919afdd469c5e327b5a5a2c9cb | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_519254919afdd469c5e327b5a5a2c9cb | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_fb686f936bb0a352717f2d70e114230e | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_fb686f936bb0a352717f2d70e114230e | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_fb686f936bb0a352717f2d70e114230e | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_fb686f936bb0a352717f2d70e114230e | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_83974f359af8fc3a0dc2825e93dc5c36 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_83974f359af8fc3a0dc2825e93dc5c36 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_a55833d843dd20707d7c31bd0b16df7b | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_a55833d843dd20707d7c31bd0b16df7b | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_f99fab494edbabd04a99558bc8f242e4 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_f99fab494edbabd04a99558bc8f242e4 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_8e9c6b21c694a0b52f81ff6e35e45772 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_8e9c6b21c694a0b52f81ff6e35e45772 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_35922d8ac24949b1f1e958af280b8753 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_35922d8ac24949b1f1e958af280b8753 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_35922d8ac24949b1f1e958af280b8753 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_35922d8ac24949b1f1e958af280b8753 | p@chr11:67056544..67056589, - |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_08b91bd68d5ebae6cc6be9f68329b4a4 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_08b91bd68d5ebae6cc6be9f68329b4a4 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_08b91bd68d5ebae6cc6be9f68329b4a4 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_08b91bd68d5ebae6cc6be9f68329b4a4 | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_6a3552d70d2f31fa7ea6edf30e8feda6 | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_6a3552d70d2f31fa7ea6edf30e8feda6 | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_5e4be862d6fa8aeae0f465f045f8c12e | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_5e4be862d6fa8aeae0f465f045f8c12e | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_81a3b34a960674fc60ba0aec30a85b8f | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_81a3b34a960674fc60ba0aec30a85b8f | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_76564835119024ad703d650835af2406 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_76564835119024ad703d650835af2406 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_4269d8f50931406daeb196edd7545be4 | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_4269d8f50931406daeb196edd7545be4 | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_388a07b97908d7604a95554c49fd0926 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_388a07b97908d7604a95554c49fd0926 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_8eca5de236429c5e1f4d47e2931da66a | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_8eca5de236429c5e1f4d47e2931da66a | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_8eca5de236429c5e1f4d47e2931da66a | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_8eca5de236429c5e1f4d47e2931da66a | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_ce4b0159c757e26e3c0e3816847bfd72 | p4@Sgca |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_ce4b0159c757e26e3c0e3816847bfd72 | p4@Sgca |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_df58abdc473730abdf3990bd823f6f14 | p1@Mepe |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_df58abdc473730abdf3990bd823f6f14 | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_f3b0eaac523ac3e4eb2e7fd48edb1367 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_f3b0eaac523ac3e4eb2e7fd48edb1367 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_f3b0eaac523ac3e4eb2e7fd48edb1367 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_f3b0eaac523ac3e4eb2e7fd48edb1367 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_3f9c257f70a866ce827570c2fe58f52b | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_3f9c257f70a866ce827570c2fe58f52b | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_3f9c257f70a866ce827570c2fe58f52b | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_3f9c257f70a866ce827570c2fe58f52b | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_09e6e29e3452da421128dd534073caed | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_09e6e29e3452da421128dd534073caed | p@chr2:180890942..180890956, - |
