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{{UBERON
{{UBERON
|id=UBERON:0005396
|alt_id=
|name=carotid artery segment
|namespace=
|def="One of: the common carotid artery, or its branches, the external and internal carotid arteries." [https://sourceforge.net/tracker/?func=detail&aid=3486870&group_id=76834&atid=994764, Wikipedia:Carotid_artery]
|xref=BTO:0000168;;EFO:0000818;;EHDAA:6385;;EMAPA:18609;;EV:0100379;;FMA:70504;;GAID:478;;galen:CarotidArtery;;MA:0001925;;MAT:0000501;;MESH:A.07.231.114.186;;ncithesaurus:Carotid_Artery;;OpenCyc:Mx4rvg7rcJwpEbGdrcN5Y29ycA;;SCTID:362040006;;SCTID:69105007;;TAO:0000097;;VHOG:0000266;;ZFA:0000097
|is_a=UBERON:0004573
|synonym="carotid artery" EXACT [MA:0001925];;"subdivision of common carotid artery" EXACT [FMA:70504]
|comment=Editor/usage notes: This is a generic grouping class that is the superclass of the trunks/branches of the common carotid artery. Note that AOs vary widely in how they divide up and generalize arteries
|comment=Editor/usage notes: This is a generic grouping class that is the superclass of the trunks/branches of the common carotid artery. Note that AOs vary widely in how they divide up and generalize arteries
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="One of: the common carotid artery, or its branches, the external and internal carotid arteries." [https://sourceforge.net/tracker/?func
|subset=grouping_class;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005396
|is_a=UBERON:0004573
|is_obsolete=
|located_in=
|located_in=
|name=carotid artery segment
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995.[TAO]" xsd:string
|is_obsolete=
|subset=grouping_class;;vertebrate_core
|preceded_by=
|synonym="carotid artery" EXACT [MA:0001925];;"subdivision of common carotid artery" EXACT [FMA:70504]
|union_of=
|xref=BTO:0000168;;EFO:0000818;;EHDAA:6385;;EMAPA:18609;;EV:0100379;;FMA:70504;;GAID:478;;galen:CarotidArtery;;MA:0001925;;MAT:0000501;;MESH:A.07.231.114.186;;ncithesaurus:Carotid_Artery;;OpenCyc:Mx4rvg7rcJwpEbGdrcN5Y29ycA;;SCTID:362040006;;SCTID:69105007;;TAO:0000097;;VHOG:0000266;;ZFA:0000097
}}
}}

Latest revision as of 17:53, 12 September 2014

Name:carotid artery segment
Namespace:FANTOM
Definition:"One of: the common carotid artery, or its branches, the external and internal carotid arteries." [https://sourceforge.net/tracker/?func
Xrefs:
links:

BTO:0000168
EFO:0000818
EHDAA:6385
EMAPA:18609
EV:0100379
FMA:70504
GAID:478
galen:CarotidArtery
MA:0001925
MAT:0000501
MESH:A.07.231.114.186
ncithesaurus:Carotid_Artery
OpenCyc:Mx4rvg7rcJwpEbGdrcN5Y29ycA
SCTID:362040006
SCTID:69105007
TAO:0000097
VHOG:0000266

ZFA:0000097
Synonyms: "carotid artery" EXACT [MA:0001925]
"subdivision of common carotid artery" EXACT [FMA:70504]
Comments:Editor/usage notes: This is a generic grouping class that is the superclass of the trunks/branches of the common carotid artery. Note that AOs vary widely in how they divide up and generalize arteries
Subset: grouping_class
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004573(systemic artery)



Children

part of:CL:0002596 (smooth muscle cell of the carotid artery)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005396 (carotid artery segment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.52e-50FFCP PHASE1:Hg19::chr1:169985638..169985652,-#_8e5ae667f19c44935451dfb0005dd386p@chr1:169985638..169985652, -
4.52e-50FFCP PHASE2:Hg19::chr1:169985638..169985652,-#_8e5ae667f19c44935451dfb0005dd386p@chr1:169985638..169985652, -
5.04e-34FFCP PHASE2:Hg19::chr1:25046857..25046871,+#_3ced82e99c07dc96e8333eb4bc2b2b76p@chr1:25046857..25046871, +
5.04e-34FFCP PHASE1:Hg19::chr1:25046857..25046871,+#_3ced82e99c07dc96e8333eb4bc2b2b76p@chr1:25046857..25046871, +
5.04e-34FFCP PHASE2:Hg19::chr7:120725207..120725210,+#_3ced82e99c07dc96e8333eb4bc2b2b76p@chr7:120725207..120725210, +
5.04e-34FFCP PHASE1:Hg19::chr7:120725207..120725210,+#_3ced82e99c07dc96e8333eb4bc2b2b76p@chr7:120725207..120725210, +
1.87e-31FFCP PHASE1:Hg19::chr21:30006488..30006499,+#_6c13b732fd80f0ffe219122fd3fb1e95p@chr21:30006488..30006499, +
1.87e-31FFCP PHASE2:Hg19::chr21:30006488..30006499,+#_6c13b732fd80f0ffe219122fd3fb1e95p@chr21:30006488..30006499, +
2.18e-31FFCP PHASE2:Hg19::chr17:80575169..80575172,-#_16647e97c902df034738d15c9e111be4p@chr17:80575169..80575172, -
2.18e-31FFCP PHASE1:Hg19::chr17:80575169..80575172,-#_16647e97c902df034738d15c9e111be4p@chr17:80575169..80575172, -
4.32e-26FFCP PHASE2:Hg19::chr7:82172409..82172413,+#_024d5711cd12a0ceed6a2b65817f32f8p@chr7:82172409..82172413, +
4.32e-26FFCP PHASE1:Hg19::chr7:82172409..82172413,+#_024d5711cd12a0ceed6a2b65817f32f8p@chr7:82172409..82172413, +
5.56e-26FFCP PHASE2:Hg19::chr9:114720368..114720377,-#_fa96b2b7c25e9b9d1cb98cdb7fc3ec04p@chr9:114720368..114720377, -
5.56e-26FFCP PHASE1:Hg19::chr9:114720368..114720377,-#_fa96b2b7c25e9b9d1cb98cdb7fc3ec04p@chr9:114720368..114720377, -
7.14e-26FFCP PHASE2:Hg19::chr6:136397717..136397720,-#_4169fa4195ef5ed88558837220ec6aa4p@chr6:136397717..136397720, -
7.14e-26FFCP PHASE2:Hg19::chr11:120317216..120317220,+#_4169fa4195ef5ed88558837220ec6aa4p@chr11:120317216..120317220, +
7.14e-26FFCP PHASE1:Hg19::chr6:136397717..136397720,-#_4169fa4195ef5ed88558837220ec6aa4p@chr6:136397717..136397720, -
7.14e-26FFCP PHASE1:Hg19::chr11:120317216..120317220,+#_4169fa4195ef5ed88558837220ec6aa4p@chr11:120317216..120317220, +
7.14e-26FFCP PHASE2:Hg19::chr12:6806552..6806592,-#_4169fa4195ef5ed88558837220ec6aa4p@chr12:6806552..6806592, -
7.14e-26FFCP PHASE1:Hg19::chr12:6806552..6806592,-#_4169fa4195ef5ed88558837220ec6aa4p@chr12:6806552..6806592, -
3.53e-22FFCP PHASE2:Hg19::chr19:42724302..42724313,-#_f7c40083f9df332d5ac43f6206b6dca9p4@DEDD2
3.53e-22FFCP PHASE1:Hg19::chr19:42724302..42724313,-#_f7c40083f9df332d5ac43f6206b6dca9p4@DEDD2
1.01e-21FFCP PHASE2:Hg19::chr21:47539028..47539037,+#_b1e2d2edd6253b97e477996b2a6fcb6dp@chr21:47539028..47539037, +
1.01e-21FFCP PHASE1:Hg19::chr21:47539028..47539037,+#_b1e2d2edd6253b97e477996b2a6fcb6dp@chr21:47539028..47539037, +
3.81e-21FFCP PHASE1:Hg19::chr2:216578345..216578377,+#_639536d8ded5afd7ddd79d315e7d88cfp@chr2:216578345..216578377, +
3.81e-21FFCP PHASE1:Hg19::chr3:51429598..51429609,+#_639536d8ded5afd7ddd79d315e7d88cfp12@RBM15B
3.81e-21FFCP PHASE2:Hg19::chr22:36727653..36727660,-#_639536d8ded5afd7ddd79d315e7d88cfp@chr22:36727653..36727660, -
3.81e-21FFCP PHASE2:Hg19::chr2:216578345..216578377,+#_639536d8ded5afd7ddd79d315e7d88cfp@chr2:216578345..216578377, +
3.81e-21FFCP PHASE1:Hg19::chr22:36727653..36727660,-#_639536d8ded5afd7ddd79d315e7d88cfp@chr22:36727653..36727660, -
3.81e-21FFCP PHASE2:Hg19::chr3:51429598..51429609,+#_639536d8ded5afd7ddd79d315e7d88cfp12@RBM15B
4.66e-21FFCP PHASE2:Hg19::chr1:25046892..25046903,+#_40ea46112a6fa5cd4051c4c93e011849p@chr1:25046892..25046903, +
4.66e-21FFCP PHASE1:Hg19::chr1:25046892..25046903,+#_40ea46112a6fa5cd4051c4c93e011849p@chr1:25046892..25046903, +
5.7e-21FFCP PHASE2:Hg19::chr12:65959570..65959573,-#_f919f90d06fdd48bb2a101b0f1f4d656p@chr12:65959570..65959573, -
5.7e-21FFCP PHASE2:Hg19::chr12:57628774..57628785,-#_f919f90d06fdd48bb2a101b0f1f4d656p@chr12:57628774..57628785, -
5.7e-21FFCP PHASE2:Hg19::chr1:43917566..43917577,-#_f919f90d06fdd48bb2a101b0f1f4d656p6@HYI
5.7e-21FFCP PHASE1:Hg19::chr12:65959570..65959573,-#_f919f90d06fdd48bb2a101b0f1f4d656p@chr12:65959570..65959573, -
5.7e-21FFCP PHASE1:Hg19::chr1:43917566..43917577,-#_f919f90d06fdd48bb2a101b0f1f4d656p6@HYI
5.7e-21FFCP PHASE1:Hg19::chr12:57628774..57628785,-#_f919f90d06fdd48bb2a101b0f1f4d656p@chr12:57628774..57628785, -
2.26e-20FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_6af0de23508766030fa74ff795183fa6p@chr2:134548872..134548879, -
2.26e-20FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_6af0de23508766030fa74ff795183fa6p@chr2:134548872..134548879, -
1.24e-19FFCP PHASE2:Hg19::chr12:122261654..122261658,+#_3d9e86ef4e1da224f650ba45292d7234p@chr12:122261654..122261658, +
1.24e-19FFCP PHASE1:Hg19::chr12:122261654..122261658,+#_3d9e86ef4e1da224f650ba45292d7234p@chr12:122261654..122261658, +
8.4e-19FFCP PHASE2:Hg19::chr12:12939901..12939915,-#_2f13e4df1e102264adf3b15548e9f1afp@chr12:12939901..12939915, -
8.4e-19FFCP PHASE1:Hg19::chr12:12939901..12939915,-#_2f13e4df1e102264adf3b15548e9f1afp@chr12:12939901..12939915, -
3.16e-18FFCP PHASE1:Hg19::chr11:122073019..122073034,-#_7e4b829754fd95414e6721c181aeb5bfp@chr11:122073019..122073034, -
3.16e-18FFCP PHASE2:Hg19::chr11:122073019..122073034,-#_7e4b829754fd95414e6721c181aeb5bfp@chr11:122073019..122073034, -
5.48e-18FFCP PHASE2:Hg19::chr4:169022528..169022531,+#_7f9c95a81937b00209a05239d48582a6p@chr4:169022528..169022531, +
5.48e-18FFCP PHASE1:Hg19::chr4:169022528..169022531,+#_7f9c95a81937b00209a05239d48582a6p@chr4:169022528..169022531, +
6.27e-18FFCP PHASE1:Hg19::chr2:47109897..47109901,+#_58fbc993111851a5a795c36d856ee9a0p@chr2:47109897..47109901, +
6.27e-18FFCP PHASE2:Hg19::chr2:47109897..47109901,+#_58fbc993111851a5a795c36d856ee9a0p@chr2:47109897..47109901, +
6.48e-18FFCP PHASE1:Hg19::chr2:85173188..85173189,-#_c18359f44e81a18963d30499a91c5f83p@chr2:85173188..85173189, -
6.48e-18FFCP PHASE2:Hg19::chr6:27198375..27198387,-#_c18359f44e81a18963d30499a91c5f83p@chr6:27198375..27198387, -
6.48e-18FFCP PHASE1:Hg19::chr6:27198375..27198387,-#_c18359f44e81a18963d30499a91c5f83p@chr6:27198375..27198387, -
6.48e-18FFCP PHASE2:Hg19::chr2:85173188..85173189,-#_c18359f44e81a18963d30499a91c5f83p@chr2:85173188..85173189, -
7.67e-18FFCP PHASE1:Hg19::chr9:33797953..33797969,+#_aeca0d1ec22e1376758e8b44c99fe5f1p@chr9:33797953..33797969, +
7.67e-18FFCP PHASE2:Hg19::chr9:33797953..33797969,+#_aeca0d1ec22e1376758e8b44c99fe5f1p@chr9:33797953..33797969, +
1.62e-17FFCP PHASE2:Hg19::chr16:89595986..89595990,+#_91c55e04e2050bba1afe50a0be2188efp@chr16:89595986..89595990, +
1.62e-17FFCP PHASE1:Hg19::chr16:89595986..89595990,+#_91c55e04e2050bba1afe50a0be2188efp@chr16:89595986..89595990, +
2.99e-16FFCP PHASE2:Hg19::chr17:40672344..40672359,+#_ef9378544bd8fe4752376e14065eca74p4@ATP6V0A1
2.99e-16FFCP PHASE1:Hg19::chr17:40672344..40672359,+#_ef9378544bd8fe4752376e14065eca74p4@ATP6V0A1
4.79e-16FFCP PHASE1:Hg19::chr12:127768750..127768765,+#_76e85e406232080e5b747655cb9ad235p@chr12:127768750..127768765, +
4.79e-16FFCP PHASE2:Hg19::chr12:127768750..127768765,+#_76e85e406232080e5b747655cb9ad235p@chr12:127768750..127768765, +
1.15e-15FFCP PHASE2:Hg19::chr1:155932380..155932384,-#_a6fa455f3f92401fed2cf7d77185e4c8p45@ARHGEF2
1.15e-15FFCP PHASE1:Hg19::chr1:155932380..155932384,-#_a6fa455f3f92401fed2cf7d77185e4c8p45@ARHGEF2
1.33e-15FFCP PHASE2:Hg19::chr15:80841630..80841633,-#_1ed15c10674ca0c1abcccd4eced62ea7p@chr15:80841630..80841633, -
1.33e-15FFCP PHASE1:Hg19::chr15:80841630..80841633,-#_1ed15c10674ca0c1abcccd4eced62ea7p@chr15:80841630..80841633, -
1.54e-15FFCP PHASE2:Hg19::chr9:118431048..118431059,+#_f093c1071378abb60e7693dc04f84fa2p@chr9:118431048..118431059, +
1.54e-15FFCP PHASE2:Hg19::chr21:26713474..26713508,-#_f093c1071378abb60e7693dc04f84fa2p@chr21:26713474..26713508, -
1.54e-15FFCP PHASE1:Hg19::chr9:118431048..118431059,+#_f093c1071378abb60e7693dc04f84fa2p@chr9:118431048..118431059, +
1.54e-15FFCP PHASE1:Hg19::chr21:26713474..26713508,-#_f093c1071378abb60e7693dc04f84fa2p@chr21:26713474..26713508, -
1.78e-15FFCP PHASE2:Hg19::chr12:65959975..65959997,+#_22d00fa7782d5b969db9ddbbed02b03cp@chr12:65959975..65959997, +
1.78e-15FFCP PHASE1:Hg19::chr12:65959975..65959997,+#_22d00fa7782d5b969db9ddbbed02b03cp@chr12:65959975..65959997, +
2.05e-15FFCP PHASE1:Hg19::chr18:52495549..52495589,-#_8bd6190603a03bdb3cce820c578890f0p@chr18:52495549..52495589, -
2.05e-15FFCP PHASE2:Hg19::chr18:52495549..52495589,-#_8bd6190603a03bdb3cce820c578890f0p@chr18:52495549..52495589, -
3.37e-15FFCP PHASE2:Hg19::chr7:27154961..27154973,+#_b4d2aa2f5260a69ce6dc1895755b1056p1@ENST00000517635
3.37e-15FFCP PHASE1:Hg19::chr7:27154961..27154973,+#_b4d2aa2f5260a69ce6dc1895755b1056p1@ENST00000517635
3.46e-15FFCP PHASE1:Hg19::chr12:63097437..63097440,-#_b00d83f2770e48306440e6a46051eca0p@chr12:63097437..63097440, -
3.46e-15FFCP PHASE2:Hg19::chr12:63097437..63097440,-#_b00d83f2770e48306440e6a46051eca0p@chr12:63097437..63097440, -
3.99e-15FFCP PHASE2:Hg19::chr12:69633237..69633264,-#_135eeb49cbdef214bf367023a9b285adp@chr12:69633237..69633264, -
3.99e-15FFCP PHASE1:Hg19::chr12:69633237..69633264,-#_135eeb49cbdef214bf367023a9b285adp@chr12:69633237..69633264, -
5.52e-15FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_b363336e32a483294fffc70a80f4fc67p@chr3:106484411..106484418, +
5.52e-15FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_b363336e32a483294fffc70a80f4fc67p@chr3:106484411..106484418, +
9.65e-15FFCP PHASE1:Hg19::chr2:33437467..33437488,+#_1a082ee50e95813aaacfe25ec710cb53p@chr2:33437467..33437488, +
9.65e-15FFCP PHASE2:Hg19::chr2:33437467..33437488,+#_1a082ee50e95813aaacfe25ec710cb53p@chr2:33437467..33437488, +
2.21e-14FFCP PHASE2:Hg19::chr20:48140671..48140693,-#_5dc2e48e2f4c7dc0d23ed91a5db9e07dp@chr20:48140671..48140693, -
2.21e-14FFCP PHASE1:Hg19::chr20:48140671..48140693,-#_5dc2e48e2f4c7dc0d23ed91a5db9e07dp@chr20:48140671..48140693, -
5.44e-14FFCP PHASE2:Hg19::chr11:12182490..12182503,+#_00c3051944ff430ee4f7fa60b6cb74d9p8@MICAL2
5.44e-14FFCP PHASE1:Hg19::chr11:12182490..12182503,+#_00c3051944ff430ee4f7fa60b6cb74d9p8@MICAL2
7.07e-14FFCP PHASE2:Hg19::chr4:74736899..74736917,+#_70f624f2e502b87d6e097ae197e5ba13p@chr4:74736899..74736917, +
7.07e-14FFCP PHASE1:Hg19::chr4:74736899..74736917,+#_70f624f2e502b87d6e097ae197e5ba13p@chr4:74736899..74736917, +
8.06e-14FFCP PHASE1:Hg19::chr1:32257811..32257816,-#_db8e883d9f3cfb321d6b5be03944526ep1@BC098449
8.06e-14FFCP PHASE2:Hg19::chr1:32257811..32257816,-#_db8e883d9f3cfb321d6b5be03944526ep1@BC098449
8.28e-14FFCP PHASE2:Hg19::chr11:5385751..5385762,+#_fabc773f432f931b66cafd475616c5e9p@chr11:5385751..5385762, +
8.28e-14FFCP PHASE2:Hg19::chr13:52027062..52027077,-#_fabc773f432f931b66cafd475616c5e9p13@INTS6
8.28e-14FFCP PHASE1:Hg19::chr11:5385751..5385762,+#_fabc773f432f931b66cafd475616c5e9p@chr11:5385751..5385762, +
8.28e-14FFCP PHASE1:Hg19::chr13:52027062..52027077,-#_fabc773f432f931b66cafd475616c5e9p13@INTS6
1.07e-13FFCP PHASE1:Hg19::chr4:66960590..66960627,-#_ecac2c78bd51891ef9f4caf9395115c7p@chr4:66960590..66960627, -
1.07e-13FFCP PHASE2:Hg19::chr11:1006616..1006623,+#_ecac2c78bd51891ef9f4caf9395115c7p6@AP2A2
1.07e-13FFCP PHASE2:Hg19::chr10:73619785..73619793,-#_ecac2c78bd51891ef9f4caf9395115c7p@chr10:73619785..73619793, -
1.07e-13FFCP PHASE1:Hg19::chr11:1006616..1006623,+#_ecac2c78bd51891ef9f4caf9395115c7p6@AP2A2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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