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(Created page with "{{UBERON |id=UBERON:0007842 |name=membrane bone |namespace= |def="Bone element that arises as a result of direct ossification." [VSAO:0000023] |xref=AEO:0000085;;EHDAA2:0...")
 
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{{UBERON
{{UBERON
|id=UBERON:0007842
|alt_id=
|name=membrane bone
|namespace=
|def="Bone element that arises as a result of direct ossification." [VSAO:0000023]
|xref=AEO:0000085;;EHDAA2:0003085;;TAO:0001645;;VSAO:0000023;;XAO:0004014;;ZFA:0001636
|is_a=UBERON:0001474
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Bone element that arises as a result of direct ossification." [VSAO:0000023]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007842
|is_a=UBERON:0001474
|is_obsolete=
|located_in=
|located_in=
|name=membrane bone
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Intramembranous bone that forms deep in the organism.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Intramembranous bone that forms deep in the organism.[TAO]" xsd:string
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=AEO:0000085;;EHDAA2:0003085;;TAO:0001645;;VSAO:0000023;;XAO:0004014;;ZFA:0001636
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:membrane bone
Namespace:FANTOM
Definition:"Bone element that arises as a result of direct ossification." [VSAO:0000023]
Xrefs:
links:

AEO:0000085
EHDAA2:0003085
TAO:0001645
VSAO:0000023
XAO:0004014

ZFA:0001636

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001474(bone element)



Children

is a:UBERON:0008907 (dermal bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007842 (membrane bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_f3ae8865fb2b0ab892e3b0dd7b338dc7p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_f3ae8865fb2b0ab892e3b0dd7b338dc7p14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_5142dbbc5298ff95a60b277322b98c6cp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_5142dbbc5298ff95a60b277322b98c6cp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_5142dbbc5298ff95a60b277322b98c6cp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_5142dbbc5298ff95a60b277322b98c6cp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_5142dbbc5298ff95a60b277322b98c6cp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_5142dbbc5298ff95a60b277322b98c6cp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_5142dbbc5298ff95a60b277322b98c6cp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_5142dbbc5298ff95a60b277322b98c6cp12@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_f469863683874454eecaf447a9d292c0p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_f469863683874454eecaf447a9d292c0p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_f469863683874454eecaf447a9d292c0p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_f469863683874454eecaf447a9d292c0p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_0c521bd07d418a5de0b56f59d0206f5ep@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_0c521bd07d418a5de0b56f59d0206f5ep@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_5c0683db0be6438e79f8d39324ce707fp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_5c0683db0be6438e79f8d39324ce707fp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_5c0683db0be6438e79f8d39324ce707fp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_5c0683db0be6438e79f8d39324ce707fp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_5c0683db0be6438e79f8d39324ce707fp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_5c0683db0be6438e79f8d39324ce707fp17@RSRC1
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_b3ed11b90227b6a85d147733ff83c4b2p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_b3ed11b90227b6a85d147733ff83c4b2p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_7df8c1b9684b41b7e5adc15f214e5a15p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_7df8c1b9684b41b7e5adc15f214e5a15p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_7df8c1b9684b41b7e5adc15f214e5a15p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_7df8c1b9684b41b7e5adc15f214e5a15p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_7df8c1b9684b41b7e5adc15f214e5a15p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_7df8c1b9684b41b7e5adc15f214e5a15p1@AK123925
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_d49a2d8445dc338eeffa0fa0a94306bap@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_d49a2d8445dc338eeffa0fa0a94306bap23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_d49a2d8445dc338eeffa0fa0a94306bap@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_d49a2d8445dc338eeffa0fa0a94306bap23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_82dcbbdff5a4ecacaf6fac3dc9e08d91p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_82dcbbdff5a4ecacaf6fac3dc9e08d91p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_82dcbbdff5a4ecacaf6fac3dc9e08d91p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_82dcbbdff5a4ecacaf6fac3dc9e08d91p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_82dcbbdff5a4ecacaf6fac3dc9e08d91p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_82dcbbdff5a4ecacaf6fac3dc9e08d91p@chr8:57353666..57353675, -
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_6a47fa0d6e2844028686f8377e257a95p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_6a47fa0d6e2844028686f8377e257a95p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_6a47fa0d6e2844028686f8377e257a95p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_6a47fa0d6e2844028686f8377e257a95p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_6a47fa0d6e2844028686f8377e257a95p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_6a47fa0d6e2844028686f8377e257a95p2@TAS1R1
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_a5795e36dd4f03ef2ffc955f509951acp@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_a5795e36dd4f03ef2ffc955f509951acp@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_a5795e36dd4f03ef2ffc955f509951acp@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_a5795e36dd4f03ef2ffc955f509951acp@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_8edbfd92b1dcc75b3fc58fc81933d01ep@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_8edbfd92b1dcc75b3fc58fc81933d01ep@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_8edbfd92b1dcc75b3fc58fc81933d01ep@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_8edbfd92b1dcc75b3fc58fc81933d01ep@chr9:125165007..125165016, +
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_4958e9a758014a641eec6473f8c05eabp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_4958e9a758014a641eec6473f8c05eabp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_4958e9a758014a641eec6473f8c05eabp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_4958e9a758014a641eec6473f8c05eabp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_4958e9a758014a641eec6473f8c05eabp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_4958e9a758014a641eec6473f8c05eabp5@PENK
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_c0b3ccb5c487eb258e9d461c2c7adba0p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_c0b3ccb5c487eb258e9d461c2c7adba0p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_03f9359e4ff7fe9831f030f903c194f0p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_03f9359e4ff7fe9831f030f903c194f0p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_3c86616222597a0268750d6c393e3d18p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_3c86616222597a0268750d6c393e3d18p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_3c86616222597a0268750d6c393e3d18p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_3c86616222597a0268750d6c393e3d18p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_55f4859a5d5582736995c5c0e5112778p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_55f4859a5d5582736995c5c0e5112778p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_55f4859a5d5582736995c5c0e5112778p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_55f4859a5d5582736995c5c0e5112778p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_55f4859a5d5582736995c5c0e5112778p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_55f4859a5d5582736995c5c0e5112778p4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_a4c64e8954cea0067b8df8d87f74636ep@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_a4c64e8954cea0067b8df8d87f74636ep@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_a4c64e8954cea0067b8df8d87f74636ep@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_a4c64e8954cea0067b8df8d87f74636ep@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_a4c64e8954cea0067b8df8d87f74636ep@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_a4c64e8954cea0067b8df8d87f74636ep@chr8:57353982..57353991, -
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_456dc7e1ca19521e9b0889691740ab07p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_456dc7e1ca19521e9b0889691740ab07p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_456dc7e1ca19521e9b0889691740ab07p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_456dc7e1ca19521e9b0889691740ab07p7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_2d14e79fc030317516a63bc469865de1p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_2d14e79fc030317516a63bc469865de1p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_2d14e79fc030317516a63bc469865de1p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_2d14e79fc030317516a63bc469865de1p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_2d14e79fc030317516a63bc469865de1p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_2d14e79fc030317516a63bc469865de1p@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_3ba5109cc181bf496d7c4c9117a89bacp@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_3ba5109cc181bf496d7c4c9117a89bacp@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_b9d39c87f3cae29ab153466a71e78c1ap@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_b9d39c87f3cae29ab153466a71e78c1ap18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_b9d39c87f3cae29ab153466a71e78c1ap@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_b9d39c87f3cae29ab153466a71e78c1ap@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_b9d39c87f3cae29ab153466a71e78c1ap18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_b9d39c87f3cae29ab153466a71e78c1ap@chr14:89044406..89044416, +
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_57e100f5c7d062667270ab04dcfbae96p11@MAB21L2
4.2e-29FFCP PHASE1:Hg19::chr1:6615468..6615485,+#_57e100f5c7d062667270ab04dcfbae96p1@TAS1R1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Intramembranous bone that forms deep in the organism.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0007842&oldid=3277921"