UBERON:0010709: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0010709
|name=pelvic complex
|namespace=
|def="Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic ...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here | |comment=AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here | ||
|created_by= | |created_by= | ||
| | |def="Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VSAO:0000215] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0010709 | |||
|is_a=UBERON:0010707 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=pelvic complex | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="lower limb" RELATED INCONSISTENT [FMA:7184];;"pelvic girdle plus pelvic limb or fin" EXACT [UBERON:cjm];;"pelvic girdle plus posterior limb or fin" EXACT [UBERON:cjm] | ||
|union_of= | |||
|xref=FMA:7184;;SCTID:416631005;;VSAO:0000215 | |||
}} | }} | ||
Latest revision as of 18:09, 12 September 2014
| Name: | pelvic complex | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VSAO:0000215] | ||
| Xrefs: |
| ||
| Synonyms: |
"lower limb" RELATED INCONSISTENT [FMA:7184] "pelvic girdle plus pelvic limb or fin" EXACT [UBERON:cjm] "pelvic girdle plus posterior limb or fin" EXACT [UBERON:cjm] | ||
| Comments: | AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010707(appendage girdle complex) |
|---|
Children
| part of: | UBERON:0002103 (hindlimb),UBERON:0004709 (pelvic appendage),UBERON:0010742 (bone of pelvic complex),UBERON:0010890 (pelvic complex muscle),UBERON:0012476 (skeleton of pelvic complex),UBERON:0014792 (musculature of pelvic complex) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10264-104D3
- 10267-104D6
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10309-104I3
- 10310-104I4
- 10313-104I7
... further results Mouse (Mus musculus)
- 10264-104D3
- 10267-104D6
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10309-104I3
- 10310-104I4
- 10313-104I7
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010709 (pelvic complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_abf99622451242fa93ca1c1f69c58113 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_abf99622451242fa93ca1c1f69c58113 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_abf99622451242fa93ca1c1f69c58113 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_abf99622451242fa93ca1c1f69c58113 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_abf99622451242fa93ca1c1f69c58113 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_abf99622451242fa93ca1c1f69c58113 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_abf99622451242fa93ca1c1f69c58113 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_abf99622451242fa93ca1c1f69c58113 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_abf99622451242fa93ca1c1f69c58113 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_abf99622451242fa93ca1c1f69c58113 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_abf99622451242fa93ca1c1f69c58113 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_abf99622451242fa93ca1c1f69c58113 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_abf99622451242fa93ca1c1f69c58113 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_abf99622451242fa93ca1c1f69c58113 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_abf99622451242fa93ca1c1f69c58113 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_abf99622451242fa93ca1c1f69c58113 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_abf99622451242fa93ca1c1f69c58113 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_abf99622451242fa93ca1c1f69c58113 | p@chr7:128483294..128483304, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_2cddb37643256413acf560b0987bae8f | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_2cddb37643256413acf560b0987bae8f | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_2cddb37643256413acf560b0987bae8f | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_2cddb37643256413acf560b0987bae8f | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_2cddb37643256413acf560b0987bae8f | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_2cddb37643256413acf560b0987bae8f | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_2cddb37643256413acf560b0987bae8f | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_2cddb37643256413acf560b0987bae8f | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_2cddb37643256413acf560b0987bae8f | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_2cddb37643256413acf560b0987bae8f | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_2cddb37643256413acf560b0987bae8f | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_2cddb37643256413acf560b0987bae8f | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_2cddb37643256413acf560b0987bae8f | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_2cddb37643256413acf560b0987bae8f | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_2cddb37643256413acf560b0987bae8f | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_2cddb37643256413acf560b0987bae8f | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_2cddb37643256413acf560b0987bae8f | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_2cddb37643256413acf560b0987bae8f | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_2cddb37643256413acf560b0987bae8f | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_2cddb37643256413acf560b0987bae8f | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_2cddb37643256413acf560b0987bae8f | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_2cddb37643256413acf560b0987bae8f | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_2cddb37643256413acf560b0987bae8f | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_2cddb37643256413acf560b0987bae8f | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_2cddb37643256413acf560b0987bae8f | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_2cddb37643256413acf560b0987bae8f | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_2cddb37643256413acf560b0987bae8f | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_2cddb37643256413acf560b0987bae8f | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_2cddb37643256413acf560b0987bae8f | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_2cddb37643256413acf560b0987bae8f | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_2cddb37643256413acf560b0987bae8f | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_2cddb37643256413acf560b0987bae8f | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_2cddb37643256413acf560b0987bae8f | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_2cddb37643256413acf560b0987bae8f | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_2cddb37643256413acf560b0987bae8f | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_2cddb37643256413acf560b0987bae8f | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_2cddb37643256413acf560b0987bae8f | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_2cddb37643256413acf560b0987bae8f | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_2cddb37643256413acf560b0987bae8f | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_2cddb37643256413acf560b0987bae8f | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_2cddb37643256413acf560b0987bae8f | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_2cddb37643256413acf560b0987bae8f | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_2cddb37643256413acf560b0987bae8f | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_2cddb37643256413acf560b0987bae8f | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_2cddb37643256413acf560b0987bae8f | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_2cddb37643256413acf560b0987bae8f | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_2cddb37643256413acf560b0987bae8f | p77@XIRP2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_d5a00cc445c5273bcdeac3fa03192fa1 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_d5a00cc445c5273bcdeac3fa03192fa1 | p73@XIRP2 |
