CL:0000062: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0007010 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000062 | |||
|is_a=CL:0000055 ;;CL:0002320 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=osteoblast | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=BTO:0001593;;FMA:66780 | |||
}} | }} |
Latest revision as of 16:28, 12 September 2014
Name: | osteoblast | ||
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Namespace: | FANTOM | ||
Definition: | "A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629] | ||
Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000055(non-terminally differentiated cell),CL:0002320(connective tissue cell) |
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develops_from: | CL:0007010(preosteoblast) |
Children
derives from: | FF:0000127 (human osteoblast-Sciencell sample),FF:0000128 (human osteoblast-Cell applications sample) |
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develops from: | CL:0000137 (osteocyte) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10445-106F4
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10586-108D1
- 10621-108G9
- 11276-116H7 (Osteoblast - differentiated, donor1)
- 11277-116H8 (Osteoblast, donor1)
- 11353-117H3 (Osteoblast - differentiated, donor2)
... further results Mouse (Mus musculus)
- 10445-106F4
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10586-108D1
- 10621-108G9
- 11276-116H7 (Osteoblast - differentiated, donor1)
- 11277-116H8 (Osteoblast, donor1)
- 11353-117H3 (Osteoblast - differentiated, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000062 (osteoblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data