CL:0000362: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id=CL:1000396 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An epithelial cell of the integument (the outer layer of an organism)." [Flybase:dsj, MA:ma] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000362 | |||
|is_a=CL:0002159 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=epidermal cell | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0007376 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym="cell of epidermis" EXACT [FMA:62411];;"epithelial cell of skin" NARROW [FMA:62411] | ||
|union_of= | |||
|xref=BTO:0001470;;FMA:62411 | |||
}} | }} |
Latest revision as of 16:33, 12 September 2014
Name: | epidermal cell | |
---|---|---|
Namespace: | FANTOM | |
Definition: | "An epithelial cell of the integument (the outer layer of an organism)." [Flybase:dsj, MA:ma] | |
Xrefs: |
| |
Synonyms: |
"cell of epidermis" EXACT [FMA:62411] "epithelial cell of skin" NARROW [FMA:62411] | |
Alt_id: | CL:1000396 |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0002159(general ecto-epithelial cell) |
---|---|
part_of: | UBERON:0007376(outer epithelium) |
Children
is a: | CL:0000312 (keratinocyte),CL:0002560 (inner root sheath cell),CL:0002561 (outer root sheath cell),CL:0002562 (hair germinal matrix cell),CL:1000448 (epithelial cell of sweat gland) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10843-111E6 (merkel cell carcinoma cell line:MKL-1)
- 10844-111E7 (merkel cell carcinoma cell line:MS-1)
- 11220-116B5 (Sebocyte, donor1)
- 11272-116H3 (Keratinocyte - epidermal, donor1)
- 11301-117B5 (Sebocyte, donor2)
- 11349-117G8 (Keratinocyte - epidermal, donor2)
- 11378-118B1 (Sebocyte, donor3)
- 11421-118F8 (Keratinocyte - epidermal, donor3)
- 11503-119F9
- 11504-119G1 (Hair Follicle Outer Root Sheath Cells, donor1)
... further results Mouse (Mus musculus)
- 10843-111E6 (merkel cell carcinoma cell line:MKL-1)
- 10844-111E7 (merkel cell carcinoma cell line:MS-1)
- 11220-116B5 (Sebocyte, donor1)
- 11272-116H3 (Keratinocyte - epidermal, donor1)
- 11301-117B5 (Sebocyte, donor2)
- 11349-117G8 (Keratinocyte - epidermal, donor2)
- 11378-118B1 (Sebocyte, donor3)
- 11421-118F8 (Keratinocyte - epidermal, donor3)
- 11503-119F9
- 11504-119G1 (Hair Follicle Outer Root Sheath Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000362 (epidermal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data