Personal tools

CL:0000785: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000785
|alt_id=
|name=mature B cell
|namespace=cell;;efo
|def="A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen." [GOC:add, ISBN:0781735149]
|xref=
|is_a=CL:0000236
|synonym="mature B lymphocyte" EXACT [];;"mature B-cell" EXACT [];;"mature B-lymphocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=CL:0000816;;CL:0000817;;CL:0000818
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen." [GOC:add, ISBN:0781735149]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000818
|disjoint_from=CL:0000816;;CL:0000817;;CL:0000818
|has_quality=
|has_quality=
|id=CL:0000785
|is_a=CL:0000236
|is_obsolete=
|located_in=
|located_in=
|name=mature B cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mature B lymphocyte" EXACT [];;"mature B-cell" EXACT [];;"mature B-lymphocyte" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:36, 12 September 2014

Name:mature B cell
Namespace:FANTOM
Definition:"A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen." [GOC:add, ISBN:0781735149]
Synonyms: "mature B lymphocyte" EXACT []
"mature B-cell" EXACT []
"mature B-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000236(B cell)
disjoint_from:CL:0000816(immature B cell),CL:0000817(precursor B cell),CL:0000818(transitional stage B cell)
develops_from:CL:0000818(transitional stage B cell)



Children


is a:CL:0000819 (B-1 B cell),CL:0000980 (plasmablast)
develops from:CL:0000980 (plasmablast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 10631-108I1 (diffuse large B-cell lymphoma cell line:CTB-1)

Mouse (Mus musculus)

  • 10631-108I1 (diffuse large B-cell lymphoma cell line:CTB-1)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000785 (mature B cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr3:168236611..168236612,-#_9443419479491508dd9ebe99242273ddp@chr3:168236611..168236612, -
1.55e-98FFCP PHASE1:Hg19::chr12:4313331..4313334,+#_9443419479491508dd9ebe99242273ddp@chr12:4313331..4313334, +
1.55e-98FFCP PHASE2:Hg19::chr3:178947187..178947192,+#_9443419479491508dd9ebe99242273ddp@chr3:178947187..178947192, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581265..166581274,-#_9443419479491508dd9ebe99242273ddp5@T
1.55e-98FFCP PHASE2:Hg19::chr21:20752389..20752420,-#_9443419479491508dd9ebe99242273ddp@chr21:20752389..20752420, -
1.55e-98FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_9443419479491508dd9ebe99242273ddp@chr3:79363599..79363606, +
1.55e-98FFCP PHASE1:Hg19::chr3:178947187..178947192,+#_9443419479491508dd9ebe99242273ddp@chr3:178947187..178947192, +
1.55e-98FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_9443419479491508dd9ebe99242273ddp@chrX:42727038..42727047, -
1.55e-98FFCP PHASE1:Hg19::chr21:20752389..20752420,-#_9443419479491508dd9ebe99242273ddp@chr21:20752389..20752420, -
1.55e-98FFCP PHASE2:Hg19::chr6:164466441..164466449,+#_9443419479491508dd9ebe99242273ddp@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr4:176358284..176358287,-#_9443419479491508dd9ebe99242273ddp@chr4:176358284..176358287, -
1.55e-98FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_9443419479491508dd9ebe99242273ddp@chr15:66464730..66464736, -
1.55e-98FFCP PHASE1:Hg19::chr3:79363599..79363606,+#_9443419479491508dd9ebe99242273ddp@chr3:79363599..79363606, +
1.55e-98FFCP PHASE2:Hg19::chr21:20867728..20867731,-#_9443419479491508dd9ebe99242273ddp@chr21:20867728..20867731, -
1.55e-98FFCP PHASE2:Hg19::chr12:40953942..40953946,+#_9443419479491508dd9ebe99242273ddp@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_9443419479491508dd9ebe99242273ddp@chr5:88646759..88646764, +
1.55e-98FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_9443419479491508dd9ebe99242273ddp@chr12:117256221..117256231, +
1.55e-98FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_9443419479491508dd9ebe99242273ddp8@SDHB
1.55e-98FFCP PHASE1:Hg19::chr6:164466441..164466449,+#_9443419479491508dd9ebe99242273ddp@chr6:164466441..164466449, +
1.55e-98FFCP PHASE1:Hg19::chr4:176358284..176358287,-#_9443419479491508dd9ebe99242273ddp@chr4:176358284..176358287, -
1.55e-98FFCP PHASE1:Hg19::chr15:66464730..66464736,-#_9443419479491508dd9ebe99242273ddp@chr15:66464730..66464736, -
1.55e-98FFCP PHASE1:Hg19::chr11:26124040..26124064,-#_9443419479491508dd9ebe99242273ddp@chr11:26124040..26124064, -
1.55e-98FFCP PHASE1:Hg19::chr8:128270027..128270033,-#_9443419479491508dd9ebe99242273ddp@chr8:128270027..128270033, -
1.55e-98FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_9443419479491508dd9ebe99242273ddp@chr21:20867728..20867731, -
1.55e-98FFCP PHASE2:Hg19::chr2:77746703..77746711,-#_9443419479491508dd9ebe99242273ddp9@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_9443419479491508dd9ebe99242273ddp@chr5:88646759..88646764, +
1.55e-98FFCP PHASE1:Hg19::chr12:122458855..122458857,+#_9443419479491508dd9ebe99242273ddp16@BCL7A
1.55e-98FFCP PHASE1:Hg19::chr3:168236611..168236612,-#_9443419479491508dd9ebe99242273ddp@chr3:168236611..168236612, -
1.55e-98FFCP PHASE2:Hg19::chr3:168337915..168337930,-#_9443419479491508dd9ebe99242273ddp@chr3:168337915..168337930, -
1.55e-98FFCP PHASE1:Hg19::chr7:86415255..86415288,+#_9443419479491508dd9ebe99242273ddp@chr7:86415255..86415288, +
1.55e-98FFCP PHASE1:Hg19::chr1:17349613..17349631,-#_9443419479491508dd9ebe99242273ddp8@SDHB
1.55e-98FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_9443419479491508dd9ebe99242273ddp9@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_9443419479491508dd9ebe99242273ddp@chr21:20752617..20752622, -
1.55e-98FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_9443419479491508dd9ebe99242273ddp1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE2:Hg19::chr6:166581583..166581586,+#_9443419479491508dd9ebe99242273ddp@chr6:166581583..166581586, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046897..8046900,+#_9443419479491508dd9ebe99242273ddp@chr4:8046897..8046900, +
1.55e-98FFCP PHASE1:Hg19::chr12:122462770..122462775,+#_9443419479491508dd9ebe99242273ddp@chr12:122462770..122462775, +
1.55e-98FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_9443419479491508dd9ebe99242273ddp@chr21:20752617..20752622, -
1.55e-98FFCP PHASE2:Hg19::chr6:39962295..39962305,+#_9443419479491508dd9ebe99242273ddp@chr6:39962295..39962305, +
1.55e-98FFCP PHASE2:Hg19::chr9:138904824..138904829,+#_9443419479491508dd9ebe99242273ddp@chr9:138904824..138904829, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_9443419479491508dd9ebe99242273ddp@chr6:166581583..166581586, +
1.55e-98FFCP PHASE1:Hg19::chr12:40991131..40991149,+#_9443419479491508dd9ebe99242273ddp@chr12:40991131..40991149, +
1.55e-98FFCP PHASE1:Hg19::chr14:106829914..106829921,-#_9443419479491508dd9ebe99242273ddp1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_9443419479491508dd9ebe99242273ddp@chr4:8046897..8046900, +
1.55e-98FFCP PHASE2:Hg19::chr1:17349654..17349690,-#_9443419479491508dd9ebe99242273ddp6@SDHB
1.55e-98FFCP PHASE1:Hg19::chr6:39962295..39962305,+#_9443419479491508dd9ebe99242273ddp@chr6:39962295..39962305, +
1.55e-98FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_9443419479491508dd9ebe99242273ddp@chr14:53594794..53594799, +
1.55e-98FFCP PHASE2:Hg19::chr2:77746775..77746779,-#_9443419479491508dd9ebe99242273ddp14@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr1:17349654..17349690,-#_9443419479491508dd9ebe99242273ddp6@SDHB
1.55e-98FFCP PHASE2:Hg19::chr17:76471146..76471155,+#_9443419479491508dd9ebe99242273ddp@chr17:76471146..76471155, +
1.55e-98FFCP PHASE1:Hg19::chr3:168337915..168337930,-#_9443419479491508dd9ebe99242273ddp@chr3:168337915..168337930, -
1.55e-98FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_9443419479491508dd9ebe99242273ddp@chr10:56410468..56410499, -
1.55e-98FFCP PHASE1:Hg19::chr2:77746775..77746779,-#_9443419479491508dd9ebe99242273ddp14@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_9443419479491508dd9ebe99242273ddp@chr3:158747347..158747353, +
1.55e-98FFCP PHASE2:Hg19::chr22:23234780..23234786,+#_9443419479491508dd9ebe99242273ddp@chr22:23234780..23234786, +
1.55e-98FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_9443419479491508dd9ebe99242273ddp@chr3:19436672..19436686, +
1.55e-98FFCP PHASE2:Hg19::chr6:166581590..166581596,+#_9443419479491508dd9ebe99242273ddp@chr6:166581590..166581596, +
1.55e-98FFCP PHASE1:Hg19::chr17:76471146..76471155,+#_9443419479491508dd9ebe99242273ddp@chr17:76471146..76471155, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046990..8046993,-#_9443419479491508dd9ebe99242273ddp@chr4:8046990..8046993, -
1.55e-98FFCP PHASE2:Hg19::chr17:76475275..76475285,-#_9443419479491508dd9ebe99242273ddp@chr17:76475275..76475285, -
1.55e-98FFCP PHASE2:Hg19::chr3:6686484..6686491,+#_9443419479491508dd9ebe99242273ddp@chr3:6686484..6686491, +
1.55e-98FFCP PHASE2:Hg19::chr2:77581116..77581120,-#_9443419479491508dd9ebe99242273ddp@chr2:77581116..77581120, -
1.55e-98FFCP PHASE1:Hg19::chr22:23234780..23234786,+#_9443419479491508dd9ebe99242273ddp@chr22:23234780..23234786, +
1.55e-98FFCP PHASE2:Hg19::chr6:39962337..39962342,+#_9443419479491508dd9ebe99242273ddp@chr6:39962337..39962342, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_9443419479491508dd9ebe99242273ddp@chr6:166581590..166581596, +
1.55e-98FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_9443419479491508dd9ebe99242273ddp@chr3:19436672..19436686, +
1.55e-98FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_9443419479491508dd9ebe99242273ddp@chr4:8046990..8046993, -
1.55e-98FFCP PHASE1:Hg19::chr17:76475275..76475285,-#_9443419479491508dd9ebe99242273ddp@chr17:76475275..76475285, -
1.55e-98FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_9443419479491508dd9ebe99242273ddp@chr3:6686484..6686491, +
1.55e-98FFCP PHASE2:Hg19::chr5:114291872..114291873,+#_9443419479491508dd9ebe99242273ddp@chr5:114291872..114291873, +
1.55e-98FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_9443419479491508dd9ebe99242273ddp@chr2:77581116..77581120, -
1.55e-98FFCP PHASE1:Hg19::chr6:39962337..39962342,+#_9443419479491508dd9ebe99242273ddp@chr6:39962337..39962342, +
1.55e-98FFCP PHASE2:Hg19::chr4:3881462..3881469,-#_9443419479491508dd9ebe99242273ddp@chr4:3881462..3881469, -
1.55e-98FFCP PHASE2:Hg19::chr12:4313331..4313334,+#_9443419479491508dd9ebe99242273ddp@chr12:4313331..4313334, +
1.55e-98FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_9443419479491508dd9ebe99242273ddp@chr14:53594794..53594799, +
1.55e-98FFCP PHASE2:Hg19::chr17:76471163..76471166,+#_9443419479491508dd9ebe99242273ddp@chr17:76471163..76471166, +
1.55e-98FFCP PHASE2:Hg19::chr11:26122006..26122011,-#_9443419479491508dd9ebe99242273ddp@chr11:26122006..26122011, -
1.55e-98FFCP PHASE2:Hg19::chr6:164466325..164466331,+#_9443419479491508dd9ebe99242273ddp@chr6:164466325..164466331, +
1.55e-98FFCP PHASE1:Hg19::chr4:3881462..3881469,-#_9443419479491508dd9ebe99242273ddp@chr4:3881462..3881469, -
1.55e-98FFCP PHASE1:Hg19::chr3:158747347..158747353,+#_9443419479491508dd9ebe99242273ddp@chr3:158747347..158747353, +
1.55e-98FFCP PHASE1:Hg19::chr12:40953942..40953946,+#_9443419479491508dd9ebe99242273ddp@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chrX:89012355..89012363,+#_9443419479491508dd9ebe99242273ddp@chrX:89012355..89012363, +
1.55e-98FFCP PHASE1:Hg19::chr17:76471163..76471166,+#_9443419479491508dd9ebe99242273ddp@chr17:76471163..76471166, +
1.55e-98FFCP PHASE2:Hg19::chr12:8808206..8808209,-#_9443419479491508dd9ebe99242273ddp@chr12:8808206..8808209, -
1.55e-98FFCP PHASE1:Hg19::chr6:164466325..164466331,+#_9443419479491508dd9ebe99242273ddp@chr6:164466325..164466331, +
1.55e-98FFCP PHASE2:Hg19::chr12:117256221..117256231,+#_9443419479491508dd9ebe99242273ddp@chr12:117256221..117256231, +
1.55e-98FFCP PHASE1:Hg19::chr9:138904824..138904829,+#_9443419479491508dd9ebe99242273ddp@chr9:138904824..138904829, +
1.55e-98FFCP PHASE1:Hg19::chr12:8808206..8808209,-#_9443419479491508dd9ebe99242273ddp@chr12:8808206..8808209, -
1.55e-98FFCP PHASE1:Hg19::chr5:114291872..114291873,+#_9443419479491508dd9ebe99242273ddp@chr5:114291872..114291873, +
1.55e-98FFCP PHASE2:Hg19::chr12:122458855..122458857,+#_9443419479491508dd9ebe99242273ddp16@BCL7A
1.55e-98FFCP PHASE2:Hg19::chr21:20747453..20747465,-#_9443419479491508dd9ebe99242273ddp@chr21:20747453..20747465, -
1.55e-98FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_9443419479491508dd9ebe99242273ddp@chrX:42727038..42727047, -
1.55e-98FFCP PHASE2:Hg19::chr11:26124040..26124064,-#_9443419479491508dd9ebe99242273ddp@chr11:26124040..26124064, -
1.55e-98FFCP PHASE1:Hg19::chr21:20747453..20747465,-#_9443419479491508dd9ebe99242273ddp@chr21:20747453..20747465, -
1.55e-98FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_9443419479491508dd9ebe99242273ddp@chr6:164466345..164466352, +
1.55e-98FFCP PHASE2:Hg19::chr1:101853882..101853891,-#_9443419479491508dd9ebe99242273ddp@chr1:101853882..101853891, -
1.55e-98FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_9443419479491508dd9ebe99242273ddp@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr12:122462770..122462775,+#_9443419479491508dd9ebe99242273ddp@chr12:122462770..122462775, +
1.55e-98FFCP PHASE1:Hg19::chr10:56410468..56410499,-#_9443419479491508dd9ebe99242273ddp@chr10:56410468..56410499, -
1.55e-98FFCP PHASE1:Hg19::chr6:164466345..164466352,+#_9443419479491508dd9ebe99242273ddp@chr6:164466345..164466352, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000785&oldid=3275343"