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{{CL
{{CL
|id=CL:0002589
|alt_id=
|name=smooth muscle cell of the brachiocephalic vasculature
|namespace=cell
|def="A smooth muscle cell of the bachiocephalic vasculature." [GOC:tfm]
|xref=
|is_a=CL:0000359
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:00:58Z
|def="A smooth muscle cell of the bachiocephalic vasculature." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002589
|is_a=CL:0000359
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=smooth muscle cell of the brachiocephalic vasculature
|namespace=FANTOM
|obo_creation_date=2011-03-06T05:00:58Z
|part_of=UBERON:0001529
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:smooth muscle cell of the brachiocephalic vasculature
Namespace:FANTOM
Definition:"A smooth muscle cell of the bachiocephalic vasculature." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:00:58Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0001529(brachiocephalic artery)



Children


derives from:FF:0000169 (human smooth muscle cell of the brachiocephalic vasculature sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
  • 11361-117I2 (Smooth Muscle Cells - Brachiocephalic, donor2)
  • 11433-118H2 (Smooth Muscle Cells - Brachiocephalic, donor3)

Mouse (Mus musculus)

  • 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
  • 11361-117I2 (Smooth Muscle Cells - Brachiocephalic, donor2)
  • 11433-118H2 (Smooth Muscle Cells - Brachiocephalic, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002589 (smooth muscle cell of the brachiocephalic vasculature), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.52e-50FFCP PHASE2:Hg19::chr7:46213607..46213616,+#_81678cab55ec4bf27cf28ceae49ec6ffp@chr7:46213607..46213616, +
4.52e-50FFCP PHASE1:Hg19::chr7:46213564..46213575,+#_81678cab55ec4bf27cf28ceae49ec6ffp@chr7:46213564..46213575, +
4.52e-50FFCP PHASE2:Hg19::chr7:46213564..46213575,+#_81678cab55ec4bf27cf28ceae49ec6ffp@chr7:46213564..46213575, +
4.52e-50FFCP PHASE1:Hg19::chr7:46213607..46213616,+#_81678cab55ec4bf27cf28ceae49ec6ffp@chr7:46213607..46213616, +
5.04e-34FFCP PHASE1:Hg19::chr7:46213930..46213940,+#_12f490aeaa0ef5e33da93facb023c10ap@chr7:46213930..46213940, +
5.04e-34FFCP PHASE2:Hg19::chr7:46213930..46213940,+#_12f490aeaa0ef5e33da93facb023c10ap@chr7:46213930..46213940, +
5.04e-34FFCP PHASE1:Hg19::chr12:76175239..76175250,-#_12f490aeaa0ef5e33da93facb023c10ap@chr12:76175239..76175250, -
5.04e-34FFCP PHASE1:Hg19::chr8:69834272..69834299,-#_12f490aeaa0ef5e33da93facb023c10ap@chr8:69834272..69834299, -
5.04e-34FFCP PHASE2:Hg19::chr12:76175239..76175250,-#_12f490aeaa0ef5e33da93facb023c10ap@chr12:76175239..76175250, -
5.04e-34FFCP PHASE2:Hg19::chr8:69834272..69834299,-#_12f490aeaa0ef5e33da93facb023c10ap@chr8:69834272..69834299, -
4.55e-29FFCP PHASE2:Hg19::chr1:162954730..162954735,+#_7c9d825d1d25ef2d786fd0b46f4fe0a8p@chr1:162954730..162954735, +
4.55e-29FFCP PHASE1:Hg19::chr1:162954730..162954735,+#_7c9d825d1d25ef2d786fd0b46f4fe0a8p@chr1:162954730..162954735, +
5.56e-26FFCP PHASE1:Hg19::chr5:102847532..102847538,+#_62ebe9b3b73e018aa0d5b36f734515f3p@chr5:102847532..102847538, +
5.56e-26FFCP PHASE1:Hg19::chr6:121837348..121837351,+#_62ebe9b3b73e018aa0d5b36f734515f3p@chr6:121837348..121837351, +
5.56e-26FFCP PHASE2:Hg19::chr6:121837348..121837351,+#_62ebe9b3b73e018aa0d5b36f734515f3p@chr6:121837348..121837351, +
5.56e-26FFCP PHASE1:Hg19::chr7:46214057..46214073,+#_62ebe9b3b73e018aa0d5b36f734515f3p@chr7:46214057..46214073, +
5.56e-26FFCP PHASE2:Hg19::chr5:102847532..102847538,+#_62ebe9b3b73e018aa0d5b36f734515f3p@chr5:102847532..102847538, +
5.56e-26FFCP PHASE2:Hg19::chr7:46214057..46214073,+#_62ebe9b3b73e018aa0d5b36f734515f3p@chr7:46214057..46214073, +
5.56e-26FFCP PHASE1:Hg19::chr7:82172409..82172413,+#_62ebe9b3b73e018aa0d5b36f734515f3p@chr7:82172409..82172413, +
5.56e-26FFCP PHASE2:Hg19::chr7:82172409..82172413,+#_62ebe9b3b73e018aa0d5b36f734515f3p@chr7:82172409..82172413, +
7.14e-26FFCP PHASE1:Hg19::chr7:46214090..46214099,+#_ad095d64ae62f6f9780bab0a80906a1cp@chr7:46214090..46214099, +
7.14e-26FFCP PHASE2:Hg19::chr7:46214090..46214099,+#_ad095d64ae62f6f9780bab0a80906a1cp@chr7:46214090..46214099, +
9.18e-26FFCP PHASE1:Hg19::chr11:73000449..73000459,+#_f11226fba72f6e082ceb490296b776d8p13@P2RY6
9.18e-26FFCP PHASE2:Hg19::chr11:73000449..73000459,+#_f11226fba72f6e082ceb490296b776d8p13@P2RY6
1.26e-21FFCP PHASE1:Hg19::chr9:140351903..140351920,-#_71905d816a146e29f8eb5e96fb290744p6@NELF
1.26e-21FFCP PHASE2:Hg19::chr9:140351903..140351920,-#_71905d816a146e29f8eb5e96fb290744p6@NELF
5.7e-21FFCP PHASE1:Hg19::chr5:95053375..95053385,+#_39e9389e60520c10de48eaf3d424bf8dp30@RHOBTB3
5.7e-21FFCP PHASE2:Hg19::chr5:95053375..95053385,+#_39e9389e60520c10de48eaf3d424bf8dp30@RHOBTB3
5.4e-20FFCP PHASE1:Hg19::chr4:74702707..74702718,+#_2bdec7617c2725c95929f73aee8c9a44p7@CXCL6
5.4e-20FFCP PHASE2:Hg19::chr4:74702707..74702718,+#_2bdec7617c2725c95929f73aee8c9a44p7@CXCL6
5.88e-19FFCP PHASE1:Hg19::chr17:67875049..67875058,+#_1b12536fa2d9d840bb5449902f45847ap@chr17:67875049..67875058, +
5.88e-19FFCP PHASE2:Hg19::chr17:67875049..67875058,+#_1b12536fa2d9d840bb5449902f45847ap@chr17:67875049..67875058, +
2.9e-18FFCP PHASE1:Hg19::chr1:79219369..79219376,+#_ca18f37bb301c947f5fb874d79557214p@chr1:79219369..79219376, +
2.9e-18FFCP PHASE2:Hg19::chr1:79219369..79219376,+#_ca18f37bb301c947f5fb874d79557214p@chr1:79219369..79219376, +
7.67e-18FFCP PHASE1:Hg19::chr3:30226342..30226387,-#_791fb70530eb0f414172fd8e6a83f78dp@chr3:30226342..30226387, -
7.67e-18FFCP PHASE2:Hg19::chr3:30226342..30226387,-#_791fb70530eb0f414172fd8e6a83f78dp@chr3:30226342..30226387, -
9.07e-18FFCP PHASE1:Hg19::chr11:33891541..33891551,-#_71cd4f685d69e24e90f6d043f5b380c0p10@LMO2
9.07e-18FFCP PHASE2:Hg19::chr11:33891541..33891551,-#_71cd4f685d69e24e90f6d043f5b380c0p10@LMO2
9.07e-18FFCP PHASE1:Hg19::chr1:183204105..183204116,+#_71cd4f685d69e24e90f6d043f5b380c0p@chr1:183204105..183204116, +
9.07e-18FFCP PHASE2:Hg19::chr1:183204105..183204116,+#_71cd4f685d69e24e90f6d043f5b380c0p@chr1:183204105..183204116, +
1.04e-17FFCP PHASE1:Hg19::chr8:69765189..69765209,-#_89189c9d88570ab8024c160d9236bfd6p1@ENST00000522354
1.04e-17FFCP PHASE2:Hg19::chr8:69765189..69765209,-#_89189c9d88570ab8024c160d9236bfd6p1@ENST00000522354
1.27e-17FFCP PHASE1:Hg19::chr8:128926504..128926507,-#_241014ee3c6d8d32e4bf83752d8f672dp@chr8:128926504..128926507, -
1.27e-17FFCP PHASE2:Hg19::chr8:128926504..128926507,-#_241014ee3c6d8d32e4bf83752d8f672dp@chr8:128926504..128926507, -
3.12e-17FFCP PHASE1:Hg19::chr17:12453278..12453291,+#_c14151a34a0b33f4c5df2a05df1d847cp1@FLJ34690
3.12e-17FFCP PHASE2:Hg19::chr17:12453278..12453291,+#_c14151a34a0b33f4c5df2a05df1d847cp1@FLJ34690
1.08e-16FFCP PHASE1:Hg19::chr7:41956273..41956284,-#_7a0c579b4dbeec4df15792691666cd65p@chr7:41956273..41956284, -
1.08e-16FFCP PHASE2:Hg19::chr7:41956273..41956284,-#_7a0c579b4dbeec4df15792691666cd65p@chr7:41956273..41956284, -
7.31e-16FFCP PHASE1:Hg19::chr10:33247025..33247030,+#_0a6e084e97fd0107f56a0695aa28efe0p@chr10:33247025..33247030, +
7.31e-16FFCP PHASE2:Hg19::chr10:33247025..33247030,+#_0a6e084e97fd0107f56a0695aa28efe0p@chr10:33247025..33247030, +
1.08e-15FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_864c9348d235eae3fd4c9261d52bd6afp@chr6:53359400..53359406, +
1.08e-15FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_864c9348d235eae3fd4c9261d52bd6afp@chr6:53359400..53359406, +
1.23e-15FFCP PHASE1:Hg19::chr7:45952362..45952373,-#_9cb550a55d891ff3a393671bf3b558fap25@IGFBP3
1.23e-15FFCP PHASE2:Hg19::chr7:45952362..45952373,-#_9cb550a55d891ff3a393671bf3b558fap25@IGFBP3
1.33e-15FFCP PHASE1:Hg19::chr5:63961948..63961959,-#_31bc6c27d31743c852d626b788843ca8p@chr5:63961948..63961959, -
1.33e-15FFCP PHASE2:Hg19::chr5:63961948..63961959,-#_31bc6c27d31743c852d626b788843ca8p@chr5:63961948..63961959, -
1.33e-15FFCP PHASE2:Hg19::chr4:99934696..99934700,-#_31bc6c27d31743c852d626b788843ca8p@chr4:99934696..99934700, -
1.33e-15FFCP PHASE1:Hg19::chr4:99934696..99934700,-#_31bc6c27d31743c852d626b788843ca8p@chr4:99934696..99934700, -
2.05e-15FFCP PHASE2:Hg19::chr9:118431048..118431059,+#_8a0c6258c13b3d4f497bda39dab01276p@chr9:118431048..118431059, +
2.05e-15FFCP PHASE1:Hg19::chr21:26713474..26713508,-#_8a0c6258c13b3d4f497bda39dab01276p@chr21:26713474..26713508, -
2.05e-15FFCP PHASE2:Hg19::chr21:26713474..26713508,-#_8a0c6258c13b3d4f497bda39dab01276p@chr21:26713474..26713508, -
2.05e-15FFCP PHASE1:Hg19::chr9:118431048..118431059,+#_8a0c6258c13b3d4f497bda39dab01276p@chr9:118431048..118431059, +
2.24e-15FFCP PHASE1:Hg19::chr3:67141193..67141198,+#_054578207e4131112d1688e54fe8fc50p@chr3:67141193..67141198, +
2.24e-15FFCP PHASE2:Hg19::chr3:67141193..67141198,+#_054578207e4131112d1688e54fe8fc50p@chr3:67141193..67141198, +
2.37e-15FFCP PHASE1:Hg19::chr4:67300735..67300776,-#_c6bc9a3ee91717ceafd4b194fccca54cp@chr4:67300735..67300776, -
2.37e-15FFCP PHASE2:Hg19::chr4:67300735..67300776,-#_c6bc9a3ee91717ceafd4b194fccca54cp@chr4:67300735..67300776, -
2.74e-15FFCP PHASE1:Hg19::chr12:65959975..65959997,+#_844a0d071852faa9ccb7efef4c4602d3p@chr12:65959975..65959997, +
2.74e-15FFCP PHASE2:Hg19::chr12:65959975..65959997,+#_844a0d071852faa9ccb7efef4c4602d3p@chr12:65959975..65959997, +
3.37e-15FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_db4a97e9b8aef638f049996d2b1b542ep@chr3:106484411..106484418, +
3.37e-15FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_db4a97e9b8aef638f049996d2b1b542ep@chr3:106484411..106484418, +
3.46e-15FFCP PHASE1:Hg19::chr9:118916228..118916241,+#_78135f7ff0df328acd51ab32f43bd407p18@PAPPA
3.46e-15FFCP PHASE2:Hg19::chr9:118916228..118916241,+#_78135f7ff0df328acd51ab32f43bd407p18@PAPPA
4.61e-15FFCP PHASE1:Hg19::chr9:118435168..118435186,+#_da503cb3172752399d7b93662a50816ep@chr9:118435168..118435186, +
4.61e-15FFCP PHASE2:Hg19::chr9:118435168..118435186,+#_da503cb3172752399d7b93662a50816ep@chr9:118435168..118435186, +
5.71e-15FFCP PHASE1:Hg19::chr8:26248799..26248836,-#_b07e528923d3a454a870e540ca4e3bc8p@chr8:26248799..26248836, -
5.71e-15FFCP PHASE2:Hg19::chr8:26248799..26248836,-#_b07e528923d3a454a870e540ca4e3bc8p@chr8:26248799..26248836, -
1.37e-14FFCP PHASE1:Hg19::chr7:93516018..93516037,-#_4f3fb8d346e3f4503f323295b247c8d7p@chr7:93516018..93516037, -
1.37e-14FFCP PHASE2:Hg19::chr7:93516018..93516037,-#_4f3fb8d346e3f4503f323295b247c8d7p@chr7:93516018..93516037, -
2.36e-14FFCP PHASE2:Hg19::chr3:106569465..106569481,-#_7e5ce1a31c491df3075ae3fca157c237p@chr3:106569465..106569481, -
2.36e-14FFCP PHASE1:Hg19::chr3:106569465..106569481,-#_7e5ce1a31c491df3075ae3fca157c237p@chr3:106569465..106569481, -
5.17e-14FFCP PHASE1:Hg19::chr18:25757224..25757232,-#_674029b378b297e9fa68cff1cf7b9d33p19@CDH2
5.17e-14FFCP PHASE2:Hg19::chr18:25757224..25757232,-#_674029b378b297e9fa68cff1cf7b9d33p19@CDH2
5.44e-14FFCP PHASE1:Hg19::chr7:45960456..45960484,+#_90e032f8f8885e998644015fa58038a8p@chr7:45960456..45960484, +
5.44e-14FFCP PHASE2:Hg19::chr7:45960456..45960484,+#_90e032f8f8885e998644015fa58038a8p@chr7:45960456..45960484, +
6.43e-14FFCP PHASE1:Hg19::chr5:102847592..102847595,+#_6ff8ebbf70f27ca5c59057cd31e80401p@chr5:102847592..102847595, +
6.43e-14FFCP PHASE2:Hg19::chr5:102847592..102847595,+#_6ff8ebbf70f27ca5c59057cd31e80401p@chr5:102847592..102847595, +
9.4e-14FFCP PHASE1:Hg19::chr6:151392051..151392059,+#_3a25adc1eb7f5901150dcee1651119d3p@chr6:151392051..151392059, +
9.4e-14FFCP PHASE2:Hg19::chr6:151392051..151392059,+#_3a25adc1eb7f5901150dcee1651119d3p@chr6:151392051..151392059, +
9.4e-14FFCP PHASE1:Hg19::chr16:59666186..59666189,-#_3a25adc1eb7f5901150dcee1651119d3p@chr16:59666186..59666189, -
9.4e-14FFCP PHASE2:Hg19::chr16:59666186..59666189,-#_3a25adc1eb7f5901150dcee1651119d3p@chr16:59666186..59666189, -
1.11e-13FFCP PHASE1:Hg19::chr4:74736294..74736305,+#_522f8e8266eb4808e3375e2dea5b1ea2p@chr4:74736294..74736305, +
1.11e-13FFCP PHASE2:Hg19::chr4:74736294..74736305,+#_522f8e8266eb4808e3375e2dea5b1ea2p@chr4:74736294..74736305, +
1.25e-13FFCP PHASE1:Hg19::chr9:118916382..118916386,+#_8c7e09472f0e1ab58e14749a5032ef68p19@PAPPA
1.25e-13FFCP PHASE2:Hg19::chr9:118916382..118916386,+#_8c7e09472f0e1ab58e14749a5032ef68p19@PAPPA
1.37e-13FFCP PHASE1:Hg19::chr9:118356219..118356259,+#_47d2e59f5e510f44695c2fdb1f0703edp@chr9:118356219..118356259, +
1.37e-13FFCP PHASE2:Hg19::chr9:118356219..118356259,+#_47d2e59f5e510f44695c2fdb1f0703edp@chr9:118356219..118356259, +
2.12e-13FFCP PHASE1:Hg19::chr4:74608220..74608239,-#_e6d490c58d1281432a3abbb56428e412p@chr4:74608220..74608239, -
2.12e-13FFCP PHASE2:Hg19::chr4:74608220..74608239,-#_e6d490c58d1281432a3abbb56428e412p@chr4:74608220..74608239, -
5.6e-13FFCP PHASE1:Hg19::chr2:159994500..159994523,+#_f45e17555ef153be9e01ce697df4a461p@chr2:159994500..159994523, +
5.6e-13FFCP PHASE2:Hg19::chr2:159994500..159994523,+#_f45e17555ef153be9e01ce697df4a461p@chr2:159994500..159994523, +

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