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{{CL
{{CL
|id=CL:0002608
|alt_id=
|name=hippocampal neuron
|namespace=cell
|def="A neuron of the hippocampus." [GOC:tfm]
|xref=
|is_a=CL:0002609
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T07:31:49Z
|def="A neuron of the hippocampus." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002608
|is_a=CL:0012001
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=hippocampal neuron
|namespace=FANTOM
|obo_creation_date=2011-03-06T07:31:49Z
|part_of=UBERON:0001954
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:hippocampal neuron
Namespace:FANTOM
Definition:"A neuron of the hippocampus." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T07:31:49Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0012001(neuron of the forebrain)
part_of:UBERON:0001954(Ammon's horn)



Children


derives from:FF:0000201 (hippocampal neuron sample),FF:0000202 (mouse hippocampal neuron sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002608 (hippocampal neuron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.33e-65FFCP PHASE2:Mm9::chr2:71367957..71367960,+#_e3c5084208bce9313a5e5697de33ebbbp14@Dlx1
1.33e-65FFCP PHASE1:Mm9::chr2:71367957..71367960,+#_e3c5084208bce9313a5e5697de33ebbbp14@Dlx1
1.33e-65FFCP PHASE2:Mm9::chr8:47379946..47379955,-#_e3c5084208bce9313a5e5697de33ebbbp1@Helt
1.33e-65FFCP PHASE1:Mm9::chr8:47379946..47379955,-#_e3c5084208bce9313a5e5697de33ebbbp1@Helt
4.9e-53FFCP PHASE2:Mm9::chr12:109150430..109150441,-#_5ebaa6b7e38084580bbf9be29e7db8f2p@chr12:109150430..109150441, -
4.9e-53FFCP PHASE1:Mm9::chr2:35959587..35959593,-#_5ebaa6b7e38084580bbf9be29e7db8f2p8@Lhx6
4.9e-53FFCP PHASE1:Mm9::chr12:109150430..109150441,-#_5ebaa6b7e38084580bbf9be29e7db8f2p@chr12:109150430..109150441, -
4.9e-53FFCP PHASE2:Mm9::chr2:35959587..35959593,-#_5ebaa6b7e38084580bbf9be29e7db8f2p8@Lhx6
1.18e-44FFCP PHASE1:Mm9::chr8:12385739..12385750,+#_84e688bb723dc16435108a976a0730f9p5@Gm5607
1.18e-44FFCP PHASE2:Mm9::chr8:12385739..12385750,+#_84e688bb723dc16435108a976a0730f9p5@Gm5607
1.66e-44FFCP PHASE2:Mm9::chr2:35960327..35960338,-#_add31720fdf3973b3e634b0053703d9fp@chr2:35960327..35960338, -
1.66e-44FFCP PHASE1:Mm9::chr2:35960327..35960338,-#_add31720fdf3973b3e634b0053703d9fp@chr2:35960327..35960338, -
2.33e-44FFCP PHASE2:Mm9::chr2:71366595..71366604,+#_58a51ad2f8e9a09a8401e61498b5f189p10@Dlx1
2.33e-44FFCP PHASE1:Mm9::chr2:71366595..71366604,+#_58a51ad2f8e9a09a8401e61498b5f189p10@Dlx1
3.27e-44FFCP PHASE1:Mm9::chr17:3482244..3482255,+#_3ec2b3d20a5afdd6ea7f7947a94b65c1p7@Tiam2
3.27e-44FFCP PHASE2:Mm9::chr17:3482244..3482255,+#_3ec2b3d20a5afdd6ea7f7947a94b65c1p7@Tiam2
4.58e-44FFCP PHASE2:Mm9::chr8:127316961..127316970,+#_b7d8258f0d23e6b2a98590b49efb3b23p4@Trim67
4.58e-44FFCP PHASE1:Mm9::chr8:127316961..127316970,+#_b7d8258f0d23e6b2a98590b49efb3b23p4@Trim67
1.75e-43FFCP PHASE2:Mm9::chr1:136763132..136763143,-#_80fdbc6b28f756f75957d3744c73de4ap@chr1:136763132..136763143, -
1.75e-43FFCP PHASE1:Mm9::chr1:136763132..136763143,-#_80fdbc6b28f756f75957d3744c73de4ap@chr1:136763132..136763143, -
2.45e-43FFCP PHASE1:Mm9::chr4:82879069..82879081,-#_ce02eba17a55cb3fa1a5e86d04135c28p8@Ttc39b
2.45e-43FFCP PHASE2:Mm9::chr4:82879069..82879081,-#_ce02eba17a55cb3fa1a5e86d04135c28p8@Ttc39b
1.7e-39FFCP PHASE2:Mm9::chr2:71381930..71381935,-#_ab560553b167d9019948d9d182df20efp@chr2:71381930..71381935, -
1.7e-39FFCP PHASE2:Mm9::chr2:71368647..71368658,-#_ab560553b167d9019948d9d182df20efp@chr2:71368647..71368658, -
1.7e-39FFCP PHASE1:Mm9::chr2:71381930..71381935,-#_ab560553b167d9019948d9d182df20efp@chr2:71381930..71381935, -
1.7e-39FFCP PHASE1:Mm9::chr2:71368647..71368658,-#_ab560553b167d9019948d9d182df20efp@chr2:71368647..71368658, -
2.66e-39FFCP PHASE1:Mm9::chr3:120862141..120862150,-#_4b5b2a23831750a746525fd11f993e01p3@Rwdd3
2.66e-39FFCP PHASE1:Mm9::chr2:106533322..106533331,+#_4b5b2a23831750a746525fd11f993e01p15@Mpped2
2.66e-39FFCP PHASE2:Mm9::chr2:106533322..106533331,+#_4b5b2a23831750a746525fd11f993e01p15@Mpped2
2.66e-39FFCP PHASE2:Mm9::chr3:120862141..120862150,-#_4b5b2a23831750a746525fd11f993e01p3@Rwdd3
4.15e-39FFCP PHASE1:Mm9::chr6:6821533..6821538,-#_bb3ee13a18f41d7e6ff72aa9cad8a9e1p@chr6:6821533..6821538, -
4.15e-39FFCP PHASE2:Mm9::chr6:6821533..6821538,-#_bb3ee13a18f41d7e6ff72aa9cad8a9e1p@chr6:6821533..6821538, -
1.17e-38FFCP PHASE1:Mm9::chr2:71366714..71366725,+#_486d368533f56653763e16e2e66f53dbp12@Dlx1
1.17e-38FFCP PHASE1:Mm9::chr8:12395287..12395295,+#_486d368533f56653763e16e2e66f53dbp9@Sox1
1.17e-38FFCP PHASE2:Mm9::chr8:12395287..12395295,+#_486d368533f56653763e16e2e66f53dbp9@Sox1
1.17e-38FFCP PHASE2:Mm9::chr2:71366714..71366725,+#_486d368533f56653763e16e2e66f53dbp12@Dlx1
8.86e-38FFCP PHASE2:Mm9::chr5:99703670..99703683,+#_6785be93d1834b0a348fdb0cee4548e9p@chr5:99703670..99703683, +
8.86e-38FFCP PHASE1:Mm9::chr5:99703670..99703683,+#_6785be93d1834b0a348fdb0cee4548e9p@chr5:99703670..99703683, +
1.02e-33FFCP PHASE1:Mm9::chr9:41387743..41387752,+#_f5060f194b8038bdeb7d862eb9c773eap@chr9:41387743..41387752, +
1.02e-33FFCP PHASE2:Mm9::chr18:37338354..37338370,-#_f5060f194b8038bdeb7d862eb9c773eap3@ENSMUST00000097611, p3@uc008epl.1
1.02e-33FFCP PHASE1:Mm9::chr18:37338354..37338370,-#_f5060f194b8038bdeb7d862eb9c773eap3@ENSMUST00000097611, p3@uc008epl.1
1.02e-33FFCP PHASE2:Mm9::chr9:41387743..41387752,+#_f5060f194b8038bdeb7d862eb9c773eap@chr9:41387743..41387752, +
1.31e-33FFCP PHASE1:Mm9::chr2:73112323..73112364,+#_61195aa88002a61850a61bffeb55c1bep@chr2:73112323..73112364, +
1.31e-33FFCP PHASE2:Mm9::chr2:73112323..73112364,+#_61195aa88002a61850a61bffeb55c1bep@chr2:73112323..73112364, +
1.31e-33FFCP PHASE2:Mm9::chr1:19094212..19094219,+#_61195aa88002a61850a61bffeb55c1bep@chr1:19094212..19094219, +
1.31e-33FFCP PHASE1:Mm9::chr1:19094212..19094219,+#_61195aa88002a61850a61bffeb55c1bep@chr1:19094212..19094219, +
4.64e-33FFCP PHASE1:Mm9::chr2:151906634..151906642,+#_57174df472ea6da99553f578d486bba5p@chr2:151906634..151906642, +
4.64e-33FFCP PHASE2:Mm9::chr2:151906634..151906642,+#_57174df472ea6da99553f578d486bba5p@chr2:151906634..151906642, +
1.16e-30FFCP PHASE2:Mm9::chr2:71367979..71367993,+#_9407ca422f96f6f0de3b57e5a29ea2e9p7@Dlx1
1.16e-30FFCP PHASE2:Mm9::chr2:71366574..71366587,+#_9407ca422f96f6f0de3b57e5a29ea2e9p8@Dlx1
1.16e-30FFCP PHASE1:Mm9::chr2:71367979..71367993,+#_9407ca422f96f6f0de3b57e5a29ea2e9p7@Dlx1
1.16e-30FFCP PHASE1:Mm9::chr2:71366574..71366587,+#_9407ca422f96f6f0de3b57e5a29ea2e9p8@Dlx1
1.83e-30FFCP PHASE1:Mm9::chr2:73112788..73112806,+#_46456f83edc1cbf8a6e8502cbeff1a44p@chr2:73112788..73112806, +
1.83e-30FFCP PHASE2:Mm9::chr2:73112788..73112806,+#_46456f83edc1cbf8a6e8502cbeff1a44p@chr2:73112788..73112806, +
4.03e-30FFCP PHASE2:Mm9::chr4:45837140..45837184,+#_59f4e09f2af34923a28b26c95dedf62fp@chr4:45837140..45837184, +
4.03e-30FFCP PHASE1:Mm9::chr4:45837140..45837184,+#_59f4e09f2af34923a28b26c95dedf62fp@chr4:45837140..45837184, +
5.61e-30FFCP PHASE2:Mm9::chr5:110816192..110816193,-#_ed7ddd3c37b742725497e7b249e5b8b0p8@Fbrsl1
5.61e-30FFCP PHASE1:Mm9::chr5:110816192..110816193,-#_ed7ddd3c37b742725497e7b249e5b8b0p8@Fbrsl1
5.61e-30FFCP PHASE2:Mm9::chr5:133018245..133018256,-#_ed7ddd3c37b742725497e7b249e5b8b0p55@Auts2
5.61e-30FFCP PHASE2:Mm9::chr18:77700930..77700932,-#_ed7ddd3c37b742725497e7b249e5b8b0p@chr18:77700930..77700932, -
5.61e-30FFCP PHASE1:Mm9::chr5:133018245..133018256,-#_ed7ddd3c37b742725497e7b249e5b8b0p55@Auts2
5.61e-30FFCP PHASE1:Mm9::chr18:77700930..77700932,-#_ed7ddd3c37b742725497e7b249e5b8b0p@chr18:77700930..77700932, -
7.89e-30FFCP PHASE1:Mm9::chr6:6811737..6811740,-#_56e7694370803bee2b14aeca159075c6p7@Dlx6as1
7.89e-30FFCP PHASE2:Mm9::chr2:32178964..32178975,-#_56e7694370803bee2b14aeca159075c6p@chr2:32178964..32178975, -
7.89e-30FFCP PHASE2:Mm9::chr6:6811737..6811740,-#_56e7694370803bee2b14aeca159075c6p7@Dlx6as1
7.89e-30FFCP PHASE1:Mm9::chr2:32178964..32178975,-#_56e7694370803bee2b14aeca159075c6p@chr2:32178964..32178975, -
7.89e-30FFCP PHASE1:Mm9::chr4:131377546..131377578,-#_56e7694370803bee2b14aeca159075c6p3@Ptpru
7.89e-30FFCP PHASE2:Mm9::chr4:131377546..131377578,-#_56e7694370803bee2b14aeca159075c6p3@Ptpru
8.94e-30FFCP PHASE2:Mm9::chr8:121618902..121618932,+#_5e1c95a241296e65dfce6958fdb00483p@chr8:121618902..121618932, +
8.94e-30FFCP PHASE1:Mm9::chr8:121618902..121618932,+#_5e1c95a241296e65dfce6958fdb00483p@chr8:121618902..121618932, +
1.12e-29FFCP PHASE2:Mm9::chr1:57028182..57028191,-#_4d7ff6267bf26aa30771395b20b8671ep11@Satb2
1.12e-29FFCP PHASE1:Mm9::chr1:57028182..57028191,-#_4d7ff6267bf26aa30771395b20b8671ep11@Satb2
1.12e-29FFCP PHASE1:Mm9::chr1:41800521..41800543,+#_4d7ff6267bf26aa30771395b20b8671ep@chr1:41800521..41800543, +
1.12e-29FFCP PHASE2:Mm9::chr12:28025618..28025629,-#_4d7ff6267bf26aa30771395b20b8671ep@chr12:28025618..28025629, -
1.12e-29FFCP PHASE2:Mm9::chr1:41800521..41800543,+#_4d7ff6267bf26aa30771395b20b8671ep@chr1:41800521..41800543, +
1.12e-29FFCP PHASE1:Mm9::chr12:28025618..28025629,-#_4d7ff6267bf26aa30771395b20b8671ep@chr12:28025618..28025629, -
1.54e-29FFCP PHASE2:Mm9::chr8:12323837..12323844,+#_f2fc869495db6ad5f73f008327b6e73bp@chr8:12323837..12323844, +
1.54e-29FFCP PHASE1:Mm9::chr8:12323837..12323844,+#_f2fc869495db6ad5f73f008327b6e73bp@chr8:12323837..12323844, +
7.38e-28FFCP PHASE2:Mm9::chr2:71368786..71368813,+#_3a5af21a9a32148ca1822d1399109d06p5@Dlx1
7.38e-28FFCP PHASE1:Mm9::chr2:71368786..71368813,+#_3a5af21a9a32148ca1822d1399109d06p5@Dlx1
9.07e-28FFCP PHASE1:Mm9::chr2:158436393..158436401,-#_6611f5f5c214b4ceb9211203efb0da3cp2@ENSMUST00000145773
9.07e-28FFCP PHASE2:Mm9::chr2:158436393..158436401,-#_6611f5f5c214b4ceb9211203efb0da3cp2@ENSMUST00000145773
1.11e-27FFCP PHASE2:Mm9::chr5:122345353..122345358,-#_852f31b6595965f3c08759a729395d5bp5@Cux2
1.11e-27FFCP PHASE1:Mm9::chr5:122345353..122345358,-#_852f31b6595965f3c08759a729395d5bp5@Cux2
1.68e-27FFCP PHASE1:Mm9::chr2:73112770..73112782,+#_ee8c5c56fa2ec32381d34eca47a5966dp@chr2:73112770..73112782, +
1.68e-27FFCP PHASE2:Mm9::chr2:73112770..73112782,+#_ee8c5c56fa2ec32381d34eca47a5966dp@chr2:73112770..73112782, +
1.68e-27FFCP PHASE1:Mm9::chr5:111846145..111846158,-#_ee8c5c56fa2ec32381d34eca47a5966dp@chr5:111846145..111846158, -
1.68e-27FFCP PHASE2:Mm9::chr5:111846145..111846158,-#_ee8c5c56fa2ec32381d34eca47a5966dp@chr5:111846145..111846158, -
2.53e-27FFCP PHASE2:Mm9::chr12:120085679..120085690,+#_93c886d492e45182fb46bdb5cccc563ep3@Sp8
2.53e-27FFCP PHASE1:Mm9::chr12:120085679..120085690,+#_93c886d492e45182fb46bdb5cccc563ep3@Sp8
3.8e-27FFCP PHASE1:Mm9::chr5:111847671..111847682,+#_acbc294492791a53494d3aef25af23e0p@chr5:111847671..111847682, +
3.8e-27FFCP PHASE2:Mm9::chr5:111847671..111847682,+#_acbc294492791a53494d3aef25af23e0p@chr5:111847671..111847682, +
4.66e-27FFCP PHASE1:Mm9::chr6:144158267..144158282,-#_42ff68d27f97b9aa4c03950ce70ec26ep16@Sox5
4.66e-27FFCP PHASE2:Mm9::chr6:144158267..144158282,-#_42ff68d27f97b9aa4c03950ce70ec26ep16@Sox5
6.99e-27FFCP PHASE1:Mm9::chr5:34892193..34892201,+#_4536585f1fa31d4df4f38ff8db8694aap7@Sh3bp2
6.99e-27FFCP PHASE2:Mm9::chr12:50483044..50483065,+#_4536585f1fa31d4df4f38ff8db8694aap@chr12:50483044..50483065, +
6.99e-27FFCP PHASE1:Mm9::chr12:50483044..50483065,+#_4536585f1fa31d4df4f38ff8db8694aap@chr12:50483044..50483065, +
6.99e-27FFCP PHASE2:Mm9::chr5:34892193..34892201,+#_4536585f1fa31d4df4f38ff8db8694aap7@Sh3bp2
1.05e-26FFCP PHASE2:Mm9::chr17:59071949..59071962,-#_ca179390c0daaf7e51e3bf209d4145f7p@chr17:59071949..59071962, -
1.05e-26FFCP PHASE1:Mm9::chr17:59071949..59071962,-#_ca179390c0daaf7e51e3bf209d4145f7p@chr17:59071949..59071962, -

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