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{{CL
{{CL
|id=CL:0000062
|alt_id=
|name=osteoblast
|namespace=cell;;efo
|def="A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629]
|xref=BTO:0001593;;FMA:66780
|is_a=CL:0000055;;CL:0002320
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000375
|develops_from=CL:0007010
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000062
|is_a=CL:0000055 ;;CL:0002320
|is_obsolete=
|located_in=
|located_in=
|name=osteoblast
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0001593;;FMA:66780
}}
}}

Latest revision as of 16:28, 12 September 2014

Name:osteoblast
Namespace:FANTOM
Definition:"A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629]
Xrefs:
links:

BTO:0001593

FMA:66780


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000055(non-terminally differentiated cell),CL:0002320(connective tissue cell)
develops_from:CL:0007010(preosteoblast)



Children


derives from:FF:0000127 (human osteoblast-Sciencell sample),FF:0000128 (human osteoblast-Cell applications sample)
develops from:CL:0000137 (osteocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000062 (osteoblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.65e-72FFCP PHASE1:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366dp5@SP7
6.65e-72FFCP PHASE2:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366dp5@SP7
6.65e-72FFCP PHASE1:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366dp@chr8:38470503..38470508, +
6.65e-72FFCP PHASE2:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366dp@chr8:38470503..38470508, +
2.16e-54FFCP PHASE2:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45cp@chr12:91395963..91395968, -
2.16e-54FFCP PHASE2:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45cp@chr1:77864109..77864116, +
2.16e-54FFCP PHASE2:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480065..124480072, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480073..124480086, -
2.16e-54FFCP PHASE1:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45cp@chr2:37593656..37593667, +
2.16e-54FFCP PHASE1:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733547..36733556, -
2.16e-54FFCP PHASE2:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45cp@chr4:88731810..88731821, +
2.16e-54FFCP PHASE1:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45cp@chr4:88731810..88731821, +
2.16e-54FFCP PHASE1:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45cp@chr9:72436290..72436302, -
2.16e-54FFCP PHASE2:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480073..124480086, -
2.16e-54FFCP PHASE1:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392583..62392613, +
2.16e-54FFCP PHASE1:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45cp1@PANX3
2.16e-54FFCP PHASE2:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45cp@chr2:37593656..37593667, +
2.16e-54FFCP PHASE2:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733547..36733556, -
2.16e-54FFCP PHASE2:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45cp@chr9:72436290..72436302, -
2.16e-54FFCP PHASE2:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392583..62392613, +
2.16e-54FFCP PHASE1:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45cp47@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45cp@chr1:199050926..199050944, -
2.16e-54FFCP PHASE1:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45cp4@SP7
2.16e-54FFCP PHASE1:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45cp34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45cp1@PANX3
2.16e-54FFCP PHASE1:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392630..62392651, +
2.16e-54FFCP PHASE1:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45cp2@PANX3
2.16e-54FFCP PHASE2:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45cp47@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45cp@chr9:116398779..116398800, +
2.16e-54FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45cp@chr6:155427848..155427862, +
2.16e-54FFCP PHASE2:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45cp@chr1:199050926..199050944, -
2.16e-54FFCP PHASE2:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45cp4@SP7
2.16e-54FFCP PHASE2:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392630..62392651, +
2.16e-54FFCP PHASE2:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45cp34@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45cp@chr6:155427848..155427862, +
2.16e-54FFCP PHASE1:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733583..36733590, -
2.16e-54FFCP PHASE1:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45cp@chr11:124479851..124479862, -
2.16e-54FFCP PHASE2:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45cp@chr9:116398779..116398800, +
2.16e-54FFCP PHASE1:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45cp52@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45cp2@PANX3
2.16e-54FFCP PHASE1:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45cp@chr11:124482705..124482719, +
2.16e-54FFCP PHASE2:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733583..36733590, -
2.16e-54FFCP PHASE2:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45cp@chr11:124479851..124479862, -
2.16e-54FFCP PHASE2:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45cp52@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45cp@chr12:91395963..91395968, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480065..124480072, -
2.16e-54FFCP PHASE2:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45cp@chr11:124482705..124482719, +
2.16e-54FFCP PHASE1:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45cp@chr1:77864109..77864116, +
1.03e-43FFCP PHASE2:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473p3@DLX5
1.03e-43FFCP PHASE1:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473p3@DLX5
4.07e-41FFCP PHASE2:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8p@chr6:36733594..36733607, -
4.07e-41FFCP PHASE1:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8p@chr12:53721918..53721923, -
4.07e-41FFCP PHASE2:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8p@chr12:53721918..53721923, -
4.07e-41FFCP PHASE1:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8p@chr16:53707116..53707125, -
4.07e-41FFCP PHASE2:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8p@chr16:53707116..53707125, -
4.07e-41FFCP PHASE1:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8p16@AIG1
4.07e-41FFCP PHASE2:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8p16@AIG1
4.07e-41FFCP PHASE1:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8p@chr6:36733594..36733607, -
4.67e-41FFCP PHASE1:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE2:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE2:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101p@chr4:88732513..88732528, +
4.67e-41FFCP PHASE1:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101p@chr4:88732513..88732528, +
5.35e-41FFCP PHASE2:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16bp@chr2:53859899..53859908, -
5.35e-41FFCP PHASE1:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16bp@chr2:53859899..53859908, -
6.8e-37FFCP PHASE1:Hg19::chr13:42264610..42264621,-#_579d13471e77cd4806a73e1c84d61bdcp@chr13:42264610..42264621, -
6.8e-37FFCP PHASE2:Hg19::chr6:160023967..160023971,+#_579d13471e77cd4806a73e1c84d61bdcp@chr6:160023967..160023971, +
6.8e-37FFCP PHASE2:Hg19::chr1:112316957..112316974,+#_579d13471e77cd4806a73e1c84d61bdcp@chr1:112316957..112316974, +
6.8e-37FFCP PHASE1:Hg19::chr11:124489771..124489792,+#_579d13471e77cd4806a73e1c84d61bdcp@chr11:124489771..124489792, +
6.8e-37FFCP PHASE2:Hg19::chrX:57934585..57934628,-#_579d13471e77cd4806a73e1c84d61bdcp@chrX:57934585..57934628, -
6.8e-37FFCP PHASE2:Hg19::chr19:28163893..28163904,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28163893..28163904, +
6.8e-37FFCP PHASE2:Hg19::chr19:45821290..45821301,-#_579d13471e77cd4806a73e1c84d61bdcp@chr19:45821290..45821301, -
6.8e-37FFCP PHASE1:Hg19::chr1:199050050..199050059,-#_579d13471e77cd4806a73e1c84d61bdcp@chr1:199050050..199050059, -
6.8e-37FFCP PHASE2:Hg19::chr17:79968480..79968490,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79968480..79968490, +
6.8e-37FFCP PHASE2:Hg19::chr8:97570368..97570378,+#_579d13471e77cd4806a73e1c84d61bdcp@chr8:97570368..97570378, +
6.8e-37FFCP PHASE2:Hg19::chr11:81619863..81619881,+#_579d13471e77cd4806a73e1c84d61bdcp@chr11:81619863..81619881, +
6.8e-37FFCP PHASE2:Hg19::chr20:4444563..4444585,+#_579d13471e77cd4806a73e1c84d61bdcp@chr20:4444563..4444585, +
6.8e-37FFCP PHASE1:Hg19::chr17:79968480..79968490,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79968480..79968490, +
6.8e-37FFCP PHASE2:Hg19::chr17:79965942..79965947,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79965942..79965947, +
6.8e-37FFCP PHASE1:Hg19::chr11:46326686..46326700,+#_579d13471e77cd4806a73e1c84d61bdcp@chr11:46326686..46326700, +
6.8e-37FFCP PHASE1:Hg19::chr19:28237057..28237073,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28237057..28237073, +
6.8e-37FFCP PHASE2:Hg19::chr6:81430111..81430117,+#_579d13471e77cd4806a73e1c84d61bdcp@chr6:81430111..81430117, +
6.8e-37FFCP PHASE1:Hg19::chr20:17519265..17519274,-#_579d13471e77cd4806a73e1c84d61bdcp@chr20:17519265..17519274, -
6.8e-37FFCP PHASE2:Hg19::chr9:29940198..29940204,+#_579d13471e77cd4806a73e1c84d61bdcp@chr9:29940198..29940204, +
6.8e-37FFCP PHASE1:Hg19::chrX:58052946..58052954,+#_579d13471e77cd4806a73e1c84d61bdcp@chrX:58052946..58052954, +
6.8e-37FFCP PHASE1:Hg19::chr17:79965942..79965947,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79965942..79965947, +
6.8e-37FFCP PHASE1:Hg19::chr1:21894015..21894027,+#_579d13471e77cd4806a73e1c84d61bdcp@chr1:21894015..21894027, +
6.8e-37FFCP PHASE1:Hg19::chr19:28164112..28164118,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28164112..28164118, +
6.8e-37FFCP PHASE1:Hg19::chr16:53706815..53706819,-#_579d13471e77cd4806a73e1c84d61bdcp@chr16:53706815..53706819, -
6.8e-37FFCP PHASE2:Hg19::chr4:16020432..16020477,-#_579d13471e77cd4806a73e1c84d61bdcp@chr4:16020432..16020477, -
6.8e-37FFCP PHASE2:Hg19::chr19:28198179..28198195,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28198179..28198195, +
6.8e-37FFCP PHASE1:Hg19::chr6:161454830..161454839,+#_579d13471e77cd4806a73e1c84d61bdcp@chr6:161454830..161454839, +
6.8e-37FFCP PHASE1:Hg19::chr20:4444563..4444585,+#_579d13471e77cd4806a73e1c84d61bdcp@chr20:4444563..4444585, +
6.8e-37FFCP PHASE2:Hg19::chr13:42264610..42264621,-#_579d13471e77cd4806a73e1c84d61bdcp@chr13:42264610..42264621, -
6.8e-37FFCP PHASE1:Hg19::chr19:45821324..45821328,-#_579d13471e77cd4806a73e1c84d61bdcp@chr19:45821324..45821328, -
6.8e-37FFCP PHASE1:Hg19::chr15:30360639..30360648,-#_579d13471e77cd4806a73e1c84d61bdcp@chr15:30360639..30360648, -
6.8e-37FFCP PHASE2:Hg19::chr4:88654323..88654347,-#_579d13471e77cd4806a73e1c84d61bdcp@chr4:88654323..88654347, -
6.8e-37FFCP PHASE2:Hg19::chr1:199050050..199050059,-#_579d13471e77cd4806a73e1c84d61bdcp@chr1:199050050..199050059, -
6.8e-37FFCP PHASE1:Hg19::chr6:81435467..81435479,+#_579d13471e77cd4806a73e1c84d61bdcp@chr6:81435467..81435479, +
6.8e-37FFCP PHASE1:Hg19::chr19:28269266..28269269,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28269266..28269269, +
6.8e-37FFCP PHASE2:Hg19::chr20:17519265..17519274,-#_579d13471e77cd4806a73e1c84d61bdcp@chr20:17519265..17519274, -

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