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{{CL
{{CL
|id=CL:0002188
|alt_id=
|name=glomerular endothelial cell
|namespace=cell
|def="An endothelial cell found in the glomerulus of the kidney. This cell is flattened, highly fenestrated, and plays a vital role in the formation of glomerular ultrafiltrate." [GOC:tfm, PMID:15840009]
|xref=BTO:0004632;;FMA:70970
|is_a=CL:0000115;;CL:0000666;;CL:1000746
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-08-26T10:59:44Z
|def="An endothelial cell found in the glomerulus of the kidney. This cell is flattened, highly fenestrated, and plays a vital role in the formation of glomerular ultrafiltrate." [GOC:tfm, PMID:15840009]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002188
|is_a=CL:0000115 ;;CL:0000666 ;;CL:1000746
|is_obsolete=
|located_in=
|located_in=
|name=glomerular endothelial cell
|namespace=FANTOM
|obo_creation_date=2010-08-26T10:59:44Z
|part_of=UBERON:0000074
|part_of=UBERON:0000074
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0004632;;FMA:70970
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:glomerular endothelial cell
Namespace:FANTOM
Definition:"An endothelial cell found in the glomerulus of the kidney. This cell is flattened, highly fenestrated, and plays a vital role in the formation of glomerular ultrafiltrate." [GOC:tfm, PMID:15840009]
Xrefs:
links:

BTO:0004632

FMA:70970
Created by:tmeehan
Creation date:2010-08-26T10:59:44Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000115(endothelial cell),CL:0000666(fenestrated cell),CL:1000746(glomerular cell)
part_of:UBERON:0000074(renal glomerulus)



Children


derives from:FF:0000153 (human renal glomerular endothelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002188 (glomerular endothelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.64e-89FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_219c299a84a91193255f05ac69e42b3fp@chr2:120409486..120409492, +
6.64e-89FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_219c299a84a91193255f05ac69e42b3fp@chr2:120409486..120409492, +
6.45e-51FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_5e531b7d28baa8c3b0108c02c48ea1e6p@chr17:79426453..79426462, +
6.45e-51FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_5e531b7d28baa8c3b0108c02c48ea1e6p@chr17:79426453..79426462, +
7.65e-51FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_9875b9a93678122a5c4b7202ab2131cfp@chr8:77557753..77557755, -
7.65e-51FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_9875b9a93678122a5c4b7202ab2131cfp@chr8:77557753..77557755, -
1.48e-40FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_3a781c0d9e3d84b8ab55ee8c52dbedb7p7@OTOF
1.48e-40FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_3a781c0d9e3d84b8ab55ee8c52dbedb7p@chr1:42777312..42777314, +
1.48e-40FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_3a781c0d9e3d84b8ab55ee8c52dbedb7p@chr22:47030082..47030087, +
1.48e-40FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_3a781c0d9e3d84b8ab55ee8c52dbedb7p@chr2:26700331..26700340, -
1.48e-40FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_3a781c0d9e3d84b8ab55ee8c52dbedb7p7@OTOF
1.48e-40FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_3a781c0d9e3d84b8ab55ee8c52dbedb7p@chr1:42777312..42777314, +
1.48e-40FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_3a781c0d9e3d84b8ab55ee8c52dbedb7p@chr2:26700331..26700340, -
1.48e-40FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_3a781c0d9e3d84b8ab55ee8c52dbedb7p@chr6:18225523..18225534, -
1.48e-40FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_3a781c0d9e3d84b8ab55ee8c52dbedb7p@chr22:47030082..47030087, +
1.48e-40FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_3a781c0d9e3d84b8ab55ee8c52dbedb7p@chr6:18225523..18225534, -
2.23e-37FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_34f1ceb8b2d1a914542c7fb8f950e93fp@chr10:3477893..3477912, -
2.23e-37FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_34f1ceb8b2d1a914542c7fb8f950e93fp@chr10:3477893..3477912, -
3.93e-36FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_37b684699d777f66c8148df7ceed80dep5@APLN
3.93e-36FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_37b684699d777f66c8148df7ceed80dep5@APLN
5.92e-36FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_6dc63ae66cedc62ed6eb3e03e6a3a10dp@chr1:172926077..172926120, -
5.92e-36FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_6dc63ae66cedc62ed6eb3e03e6a3a10dp@chr1:172926077..172926120, -
1.44e-32FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_3074a05054a62b4a1e8756d94abff7efp@chr6:84849252..84849259, +
1.44e-32FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_3074a05054a62b4a1e8756d94abff7efp@chr6:84849252..84849259, +
1.7e-32FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_84d7ea0ccd8aeba103bd8d0e9cf5ad15p10@TRIL
1.7e-32FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_84d7ea0ccd8aeba103bd8d0e9cf5ad15p10@TRIL
1.99e-32FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_f47dcee463f7337280a2a7657ab0138ep@chr7:4051097..4051112, +
1.99e-32FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_f47dcee463f7337280a2a7657ab0138ep@chr15:85403302..85403304, +
1.99e-32FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_f47dcee463f7337280a2a7657ab0138ep@chr7:4051097..4051112, +
1.99e-32FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_f47dcee463f7337280a2a7657ab0138ep@chr15:85403302..85403304, +
1.91e-30FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_c11db437b4613ab7cd24953e483b9988p@chr5:148651758..148651769, -
1.91e-30FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_c11db437b4613ab7cd24953e483b9988p@chr5:148651758..148651769, -
9.41e-29FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_edd5616c3b2b82b6d95352afcdd865f4p3@FAM167B
9.41e-29FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_edd5616c3b2b82b6d95352afcdd865f4p3@FAM167B
3.34e-28FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_07a78405df8b6426fe66a59722877061p@chr11:124628392..124628427, -
3.34e-28FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_07a78405df8b6426fe66a59722877061p@chr11:124628392..124628427, -
3.85e-28FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_d956648047c8ca098d11a38ce018e103p1@ENST00000487339
3.85e-28FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_d956648047c8ca098d11a38ce018e103p1@ENST00000487339
5.46e-28FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_eaf60d15807a7c83992d0cd46c4da0c6p@chr4:38057595..38057624, -
5.46e-28FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_eaf60d15807a7c83992d0cd46c4da0c6p@chr4:38057595..38057624, -
5.82e-28FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_1e64bc38948017d0c146cd6b434492bcp@chr19:47231340..47231383, -
5.82e-28FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_1e64bc38948017d0c146cd6b434492bcp@chr19:47231340..47231383, -
2.72e-27FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_ec096b135fa657d679c2e17fde01809ap@chr9:35753821..35753835, -
2.72e-27FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_ec096b135fa657d679c2e17fde01809ap@chr15:36653709..36653720, -
2.72e-27FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_ec096b135fa657d679c2e17fde01809ap@chr15:36653709..36653720, -
2.72e-27FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_ec096b135fa657d679c2e17fde01809ap@chr9:35753821..35753835, -
3.11e-27FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_bee76aff89a97478082655fde71ad3b5p@chr4:145568170..145568180, -
3.11e-27FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_bee76aff89a97478082655fde71ad3b5p@chr4:145568170..145568180, -
3.95e-27FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_666413b4fea646fa6e2dca3c14bc76d2p6@ACVRL1
3.95e-27FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_666413b4fea646fa6e2dca3c14bc76d2p6@ACVRL1
4.06e-27FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_9246ea5b56ab6298e383ebd7c5e23197p1@WDR87
4.06e-27FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_9246ea5b56ab6298e383ebd7c5e23197p1@WDR87
4.63e-27FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_6daa70e850ba3cb9d61a211f1aedb9a0p@chr14:91270270..91270281, -
4.63e-27FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_6daa70e850ba3cb9d61a211f1aedb9a0p@chr14:91270270..91270281, -
8.99e-27FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_104831a2297c70fd1c931fca8750a071p@chr3:43538305..43538325, -
8.99e-27FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_104831a2297c70fd1c931fca8750a071p@chr3:43538305..43538325, -
2.12e-25FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_7d59e46bbdc33fd8d1abfdf209ccb67ep1@ENST00000413103
2.12e-25FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_7d59e46bbdc33fd8d1abfdf209ccb67ep1@ENST00000413103
4.76e-25FFCP PHASE1:Hg19::chr11:940729..940745,+#_3f23f756ef25ea834d0b362b91095759p5@AP2A2
4.76e-25FFCP PHASE2:Hg19::chr11:940729..940745,+#_3f23f756ef25ea834d0b362b91095759p5@AP2A2
5.73e-25FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_8a8d12cd3bc918aa38230a65721dfb97p@chr19:42007093..42007107, -
5.73e-25FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_8a8d12cd3bc918aa38230a65721dfb97p@chr19:42007093..42007107, -
6.15e-25FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_c7e0fd5eaf4e43fedb46508ea08ff24fp@chrX:128781853..128781866, -
6.15e-25FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_c7e0fd5eaf4e43fedb46508ea08ff24fp@chrX:128781853..128781866, -
1.2e-23FFCP PHASE2:Hg19::chrX:128781635..128781648,-#_dcc2bb395d80256a15e0fe053bf52bbdp@chrX:128781635..128781648, -
1.2e-23FFCP PHASE1:Hg19::chrX:128781635..128781648,-#_dcc2bb395d80256a15e0fe053bf52bbdp@chrX:128781635..128781648, -
1.61e-23FFCP PHASE1:Hg19::chr17:61560490..61560500,+#_1eaa1b2d369f7f02ac1795f0d37379b9p@chr17:61560490..61560500, +
1.61e-23FFCP PHASE2:Hg19::chr17:61560490..61560500,+#_1eaa1b2d369f7f02ac1795f0d37379b9p@chr17:61560490..61560500, +
1.7e-23FFCP PHASE2:Hg19::chr5:55422645..55422665,-#_0aeac72f886d0bac1c2b1bd757e155b0p@chr5:55422645..55422665, -
1.7e-23FFCP PHASE1:Hg19::chr5:55422645..55422665,-#_0aeac72f886d0bac1c2b1bd757e155b0p@chr5:55422645..55422665, -
2.21e-23FFCP PHASE1:Hg19::chr16:66422312..66422316,+#_08076e246780c54ab7c764e2ac9f4d1dp@chr16:66422312..66422316, +
2.21e-23FFCP PHASE2:Hg19::chr16:66422312..66422316,+#_08076e246780c54ab7c764e2ac9f4d1dp@chr16:66422312..66422316, +
4.96e-23FFCP PHASE2:Hg19::chr19:4639579..4639589,+#_5f98556676c247a3d66345ff3e10e597p2@TNFAIP8L1
4.96e-23FFCP PHASE1:Hg19::chr19:4639579..4639589,+#_5f98556676c247a3d66345ff3e10e597p2@TNFAIP8L1
7.94e-23FFCP PHASE2:Hg19::chr4:55981146..55981149,-#_6dcacbbd1f151a69c5bbc15fdcc0ce7bp@chr4:55981146..55981149, -
7.94e-23FFCP PHASE1:Hg19::chr4:55981146..55981149,-#_6dcacbbd1f151a69c5bbc15fdcc0ce7bp@chr4:55981146..55981149, -
7.92e-22FFCP PHASE1:Hg19::chr16:66413317..66413328,+#_5831aea50d219c43f52f8d1b96dea982p1@AB385138
7.92e-22FFCP PHASE2:Hg19::chr16:66413317..66413328,+#_5831aea50d219c43f52f8d1b96dea982p1@AB385138
7.94e-22FFCP PHASE1:Hg19::chrX:10544929..10544941,-#_1ecc0f846a77d9f60c7810dc32a8bfe9p14@MID1
7.94e-22FFCP PHASE2:Hg19::chrX:10544929..10544941,-#_1ecc0f846a77d9f60c7810dc32a8bfe9p14@MID1
1.2e-21FFCP PHASE2:Hg19::chr19:45226115..45226126,-#_106f81ed742395fd0b8add293538e01ap@chr19:45226115..45226126, -
1.2e-21FFCP PHASE1:Hg19::chr19:45226115..45226126,-#_106f81ed742395fd0b8add293538e01ap@chr19:45226115..45226126, -
2.25e-21FFCP PHASE1:Hg19::chr17:755468..755471,+#_cf6d257440e89bf82728620d85580a8dp@chr17:755468..755471, +
2.25e-21FFCP PHASE2:Hg19::chr17:755468..755471,+#_cf6d257440e89bf82728620d85580a8dp@chr17:755468..755471, +
2.66e-21FFCP PHASE2:Hg19::chr9:139543390..139543404,+#_0237559c17e3fd87f03e0f983e1ff7edp@chr9:139543390..139543404, +
2.66e-21FFCP PHASE1:Hg19::chr9:139543390..139543404,+#_0237559c17e3fd87f03e0f983e1ff7edp@chr9:139543390..139543404, +
4.21e-21FFCP PHASE1:Hg19::chr2:26700923..26700934,-#_0571f335b8f075d363e5e76652d88788p9@OTOF
4.21e-21FFCP PHASE2:Hg19::chr2:26700923..26700934,-#_0571f335b8f075d363e5e76652d88788p9@OTOF
5.15e-21FFCP PHASE1:Hg19::chr8:40010804..40010814,+#_9d659a667d3d7e73ac3377baf91df12ap3@C8orf4
5.15e-21FFCP PHASE1:Hg19::chr13:45390377..45390382,+#_9d659a667d3d7e73ac3377baf91df12ap@chr13:45390377..45390382, +
5.15e-21FFCP PHASE2:Hg19::chr16:13010548..13010555,+#_9d659a667d3d7e73ac3377baf91df12ap@chr16:13010548..13010555, +
5.15e-21FFCP PHASE2:Hg19::chr18:74204885..74204892,-#_9d659a667d3d7e73ac3377baf91df12ap@chr18:74204885..74204892, -
5.15e-21FFCP PHASE1:Hg19::chr9:95737369..95737393,+#_9d659a667d3d7e73ac3377baf91df12ap18@FGD3
5.15e-21FFCP PHASE2:Hg19::chr1:52498542..52498551,-#_9d659a667d3d7e73ac3377baf91df12ap@chr1:52498542..52498551, -
5.15e-21FFCP PHASE2:Hg19::chr13:45390377..45390382,+#_9d659a667d3d7e73ac3377baf91df12ap@chr13:45390377..45390382, +
5.15e-21FFCP PHASE1:Hg19::chr18:34376781..34376791,-#_9d659a667d3d7e73ac3377baf91df12ap@chr18:34376781..34376791, -
5.15e-21FFCP PHASE1:Hg19::chr3:4898478..4898486,-#_9d659a667d3d7e73ac3377baf91df12ap1@ENST00000465436
5.15e-21FFCP PHASE1:Hg19::chr16:2069979..2069989,+#_9d659a667d3d7e73ac3377baf91df12ap7@NPW
5.15e-21FFCP PHASE1:Hg19::chr19:884982..884988,-#_9d659a667d3d7e73ac3377baf91df12ap@chr19:884982..884988, -
5.15e-21FFCP PHASE1:Hg19::chr17:79166314..79166323,-#_9d659a667d3d7e73ac3377baf91df12ap@chr17:79166314..79166323, -

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