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{{UBERON
{{UBERON
|id=UBERON:0005178
|alt_id=
|name=thoracic cavity organ
|namespace=
|def="An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic]
|xref=MA:0000557
|is_a=UBERON:0005181
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005178
|is_a=UBERON:0005181
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002224
|name=thoracic cavity element
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000915
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=MA:0000557
}}
}}

Latest revision as of 17:51, 12 September 2014

Name:thoracic cavity element
Namespace:FANTOM
Definition:"An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000557

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005181(thoracic segment organ)
part_of:UBERON:0000915(thoracic segment of trunk)



Children

is a:UBERON:0001043 (esophagus),UBERON:0002048 (lung),UBERON:0015410 (heart plus pericardium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005178 (thoracic cavity element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.21e-66FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_585326792238823ce23970dfe208dd45p4@Tbx4
1.21e-66FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_585326792238823ce23970dfe208dd45p4@Tbx4
4.71e-66FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_afa496f0dd9d95608deef399664bf279p@chr9:20829911..20829920, +
4.71e-66FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_afa496f0dd9d95608deef399664bf279p@chr9:20829911..20829920, +
1.06e-62FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_466f4911e9218d668842f5baa164d513p1@ENSMUST00000134305
1.06e-62FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_466f4911e9218d668842f5baa164d513p1@ENSMUST00000134305
1.52e-61FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_50e257dd87a7e5f406551b3a17d440c6p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.52e-61FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_50e257dd87a7e5f406551b3a17d440c6p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.91e-61FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_f35bedb92005b3623e8e6cdf3c0ecd0fp6@Tbx4
1.91e-61FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_f35bedb92005b3623e8e6cdf3c0ecd0fp6@Tbx4
5.56e-61FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_89547e94dfeb4d477547901735fb012cp@chr12:57598716..57598720, -
5.56e-61FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_89547e94dfeb4d477547901735fb012cp@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_89547e94dfeb4d477547901735fb012cp@chr4:138812977..138812992, +
5.56e-61FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_89547e94dfeb4d477547901735fb012cp@chr8:94878479..94878503, -
5.56e-61FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_89547e94dfeb4d477547901735fb012cp@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_89547e94dfeb4d477547901735fb012cp@chr4:138812977..138812992, +
5.56e-61FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_89547e94dfeb4d477547901735fb012cp@chr8:94878479..94878503, -
5.56e-61FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_89547e94dfeb4d477547901735fb012cp@chr11:59457994..59457997, -
5.56e-61FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_89547e94dfeb4d477547901735fb012cp@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_89547e94dfeb4d477547901735fb012cp@chr12:57598716..57598720, -
1.35e-60FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_c8d98e77ddcaab248167698e8c8c5c29p9@Nav2
1.35e-60FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_c8d98e77ddcaab248167698e8c8c5c29p9@Nav2
2.87e-58FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_b1e29c3dd0402f00bd5386f4fb3ca30dp@chr12:57633887..57633899, -
2.87e-58FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_b1e29c3dd0402f00bd5386f4fb3ca30dp@chr12:57633887..57633899, -
1.23e-57FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_78caf7f929dde3c04bd793d907190e33p8@Nkx2-1
1.23e-57FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_78caf7f929dde3c04bd793d907190e33p8@Nkx2-1
1.37e-57FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_afd95a109283311bb1f715d4789dac01p2@E030019B13Rik
1.37e-57FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_afd95a109283311bb1f715d4789dac01p2@E030019B13Rik
1.53e-57FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_73151150899808861728ec3027cb4d6bp10@Nebl
1.53e-57FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_73151150899808861728ec3027cb4d6bp10@Nebl
1.7e-57FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_78ebd3d0b3969ac102a894853525ab90p9@Nkx2-1
1.7e-57FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_78ebd3d0b3969ac102a894853525ab90p9@Nkx2-1
1.79e-56FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_b14eb74140e3d47c6c65344ec43c8fffp3@E030019B13Rik
1.79e-56FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_b14eb74140e3d47c6c65344ec43c8fffp3@E030019B13Rik
1.79e-56FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_b14eb74140e3d47c6c65344ec43c8fffp@chr12:57598537..57598547, -
1.79e-56FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_b14eb74140e3d47c6c65344ec43c8fffp3@Trpm6
1.79e-56FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_b14eb74140e3d47c6c65344ec43c8fffp@chr12:57598537..57598547, -
1.79e-56FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_b14eb74140e3d47c6c65344ec43c8fffp3@Trpm6
2.01e-56FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_6b58f7085e2dc83ff883b617958eef67p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_6b58f7085e2dc83ff883b617958eef67p@chr12:57636278..57636289, +
2.01e-56FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_6b58f7085e2dc83ff883b617958eef67p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_6b58f7085e2dc83ff883b617958eef67p@chr12:57636278..57636289, +
2.24e-56FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_80bfff046b644d6e6543116b4e08af81p@chr4:138812999..138813015, +
2.24e-56FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_80bfff046b644d6e6543116b4e08af81p@chr4:138812999..138813015, +
3.93e-56FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_4840e15648580d88b7e93c60b76224a1p7@Il18r1
3.93e-56FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_4840e15648580d88b7e93c60b76224a1p7@Il18r1
6.2e-56FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_b17cee66112d2b8d10968e09f8ae8b2ep3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_b17cee66112d2b8d10968e09f8ae8b2ep@chr14:70921265..70921285, -
6.2e-56FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_b17cee66112d2b8d10968e09f8ae8b2ep@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_b17cee66112d2b8d10968e09f8ae8b2ep4@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_b17cee66112d2b8d10968e09f8ae8b2ep@chr2:66524237..66524246, -
6.2e-56FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_b17cee66112d2b8d10968e09f8ae8b2ep@chr2:164374820..164374835, -
6.2e-56FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_b17cee66112d2b8d10968e09f8ae8b2ep3@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_b17cee66112d2b8d10968e09f8ae8b2ep4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_b17cee66112d2b8d10968e09f8ae8b2ep@chr14:70922576..70922589, -
6.2e-56FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_b17cee66112d2b8d10968e09f8ae8b2ep@chr2:66524237..66524246, -
6.2e-56FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_b17cee66112d2b8d10968e09f8ae8b2ep@chr14:70921265..70921285, -
6.2e-56FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_b17cee66112d2b8d10968e09f8ae8b2ep@chr14:70922576..70922589, -
6.2e-56FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_b17cee66112d2b8d10968e09f8ae8b2ep@chr2:164374820..164374835, -
6.2e-56FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_b17cee66112d2b8d10968e09f8ae8b2ep@chr1:184610062..184610074, +
9.42e-56FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_f0a7173dc23f35a02d811e38d6c04dccp@chr5:120282691..120282701, +
9.42e-56FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_f0a7173dc23f35a02d811e38d6c04dccp@chr5:120282691..120282701, +
1.34e-54FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_075ed7c4fccbc067a3c69b720bc2e35fp@chr12:57636911..57636924, -
1.34e-54FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_075ed7c4fccbc067a3c69b720bc2e35fp@chr12:57636911..57636924, -
3.97e-54FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_4eb653545d74ae3d83d3ca2bc5f756eep4@E030019B13Rik
3.97e-54FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_4eb653545d74ae3d83d3ca2bc5f756eep4@E030019B13Rik
1.46e-52FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_ba42fb3e15fb1ccb5c55da0f7f551f81p@chr14:70922007..70922052, +
1.46e-52FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_ba42fb3e15fb1ccb5c55da0f7f551f81p@chr12:57623172..57623185, -
1.46e-52FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_ba42fb3e15fb1ccb5c55da0f7f551f81p@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_ba42fb3e15fb1ccb5c55da0f7f551f81p@chr12:57623172..57623185, -
1.62e-52FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_5d60c8667e446904a4b51854415a8764p@chr5:28785436..28785450, -
1.62e-52FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_5d60c8667e446904a4b51854415a8764p@chr5:28785436..28785450, -
1.8e-52FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_5b2089dc69e7d0ac127ac28df1b9aaf7p@chr14:70922459..70922482, -
1.8e-52FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_5b2089dc69e7d0ac127ac28df1b9aaf7p@chr14:70922459..70922482, -
5.65e-52FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_cbbd677e58fe9fdb34c462fc5d35fd55p4@Etv5
5.65e-52FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_cbbd677e58fe9fdb34c462fc5d35fd55p4@Etv5
1.97e-51FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr6:72259797..72259814, +
1.97e-51FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr6:72263977..72263993, +
1.97e-51FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr6:72264418..72264441, +
1.97e-51FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr6:72264418..72264441, +
1.97e-51FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_8dfce4c2a2baf3e7eba0ab4f09a7757bp4@Lamp3
1.97e-51FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_8dfce4c2a2baf3e7eba0ab4f09a7757bp4@Lamp3
1.97e-51FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr12:57376690..57376716, -
1.97e-51FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr6:72263977..72263993, +
1.97e-51FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr14:70923240..70923251, -
1.97e-51FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_8dfce4c2a2baf3e7eba0ab4f09a7757bp@chr6:72264890..72264911, +
2.21e-51FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_6f609332420f5955d079678d87936319p@chr6:72264609..72264653, -
2.21e-51FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_6f609332420f5955d079678d87936319p@chr6:72264609..72264653, -
2.47e-51FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_6d39546287541895299390c4dd0b6ee7p@chr6:129378567..129378573, -
2.47e-51FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_6d39546287541895299390c4dd0b6ee7p@chr6:129378567..129378573, -
3.74e-51FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_74ee307755eedf9b0c56e8a42da528a6p16@Pde5a
3.74e-51FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_74ee307755eedf9b0c56e8a42da528a6p16@Pde5a
5.44e-51FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_bcd6b22f19cd98dc3e3a738d106feb68p7@Nkx2-1
5.44e-51FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_bcd6b22f19cd98dc3e3a738d106feb68p7@Nkx2-1

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