UBERON:0008784: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0008784 | |||
|is_a=UBERON:0002529 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=lower limb segment | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002103 | |part_of=UBERON:0002103 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="free lower limb segment" EXACT [FMA:24877];;"free lower limb subdivision" EXACT [FMA:24877];;"segment of free lower limb" EXACT [FMA:24877];;"subdivision of free lower limb" EXACT [FMA:24877] | ||
|union_of= | |||
|xref=FMA:24877 | |||
}} | }} | ||
Latest revision as of 18:03, 12 September 2014
| Name: | lower limb segment | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: |
"free lower limb segment" EXACT [FMA:24877] "free lower limb subdivision" EXACT [FMA:24877] "segment of free lower limb" EXACT [FMA:24877] "subdivision of free lower limb" EXACT [FMA:24877] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002529(limb segment) |
|---|---|
| part_of: | UBERON:0002103(hindlimb) |
Children
| is a: | UBERON:0000376 (hindlimb stylopod),UBERON:0000978 (leg),UBERON:0001465 (knee),UBERON:0002387 (foot),UBERON:0003823 (hindlimb zeugopod) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10264-104D3
- 10267-104D6
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10310-104I4
- 10313-104I7
- 10320-105A5
- 10323-105A8
... further results Mouse (Mus musculus)
- 10264-104D3
- 10267-104D6
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10310-104I4
- 10313-104I7
- 10320-105A5
- 10323-105A8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008784 (lower limb segment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_b115205ae7fbb8a585eeb36038257280 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_b115205ae7fbb8a585eeb36038257280 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_b115205ae7fbb8a585eeb36038257280 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_b115205ae7fbb8a585eeb36038257280 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_b115205ae7fbb8a585eeb36038257280 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_b115205ae7fbb8a585eeb36038257280 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_b115205ae7fbb8a585eeb36038257280 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_b115205ae7fbb8a585eeb36038257280 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_b115205ae7fbb8a585eeb36038257280 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_b115205ae7fbb8a585eeb36038257280 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_b115205ae7fbb8a585eeb36038257280 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_b115205ae7fbb8a585eeb36038257280 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_b115205ae7fbb8a585eeb36038257280 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_b115205ae7fbb8a585eeb36038257280 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_b115205ae7fbb8a585eeb36038257280 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_b115205ae7fbb8a585eeb36038257280 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_b115205ae7fbb8a585eeb36038257280 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_b115205ae7fbb8a585eeb36038257280 | p@chr22:25535147..25535150, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_c86abd49ca76aa64247856950d4b91f9 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_c86abd49ca76aa64247856950d4b91f9 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_c86abd49ca76aa64247856950d4b91f9 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_c86abd49ca76aa64247856950d4b91f9 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_c86abd49ca76aa64247856950d4b91f9 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_c86abd49ca76aa64247856950d4b91f9 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_c86abd49ca76aa64247856950d4b91f9 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_c86abd49ca76aa64247856950d4b91f9 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_c86abd49ca76aa64247856950d4b91f9 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_c86abd49ca76aa64247856950d4b91f9 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_c86abd49ca76aa64247856950d4b91f9 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_c86abd49ca76aa64247856950d4b91f9 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_c86abd49ca76aa64247856950d4b91f9 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_c86abd49ca76aa64247856950d4b91f9 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_c86abd49ca76aa64247856950d4b91f9 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_c86abd49ca76aa64247856950d4b91f9 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_c86abd49ca76aa64247856950d4b91f9 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_c86abd49ca76aa64247856950d4b91f9 | p@chr2:179399371..179399376, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_15032570c97508b08ba78fe1ebedb8fe | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_15032570c97508b08ba78fe1ebedb8fe | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_15032570c97508b08ba78fe1ebedb8fe | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_15032570c97508b08ba78fe1ebedb8fe | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_15032570c97508b08ba78fe1ebedb8fe | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_15032570c97508b08ba78fe1ebedb8fe | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_15032570c97508b08ba78fe1ebedb8fe | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_15032570c97508b08ba78fe1ebedb8fe | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_15032570c97508b08ba78fe1ebedb8fe | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_15032570c97508b08ba78fe1ebedb8fe | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_15032570c97508b08ba78fe1ebedb8fe | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_15032570c97508b08ba78fe1ebedb8fe | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_15032570c97508b08ba78fe1ebedb8fe | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_15032570c97508b08ba78fe1ebedb8fe | p@chr22:26299595..26299605, + |
