FF:10834-111D6: Difference between revisions

Latest revision as of 15:08, 3 June 2020

Name:	acute myeloid leukemia (FAB M5) cell line:U-937 DE-4
Species:	Human (Homo sapiens)
Library ID:	CNhs13058
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	37
cell type	monoblast
cell line	U-937 DE-4
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004814

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13058		CAGE		DRX007816		DRR008688

Accession ID Hg19

Library id		BAM		CTSS
CNhs13058		DRZ000113		DRZ001498

Accession ID Hg38

Library id		BAM		CTSS
CNhs13058		DRZ011463		DRZ012848

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.244
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.64
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0781
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.183
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0775
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.13
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.685
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.486
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0775
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.631
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.2
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.33
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	1.14
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.251
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13058

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.88778e-4
MA0003.1	MA0003.1	0.907
MA0004.1	MA0004.1	0.0101
MA0006.1	MA0006.1	0.262
MA0007.1	MA0007.1	0.95
MA0009.1	MA0009.1	0.402
MA0014.1	MA0014.1	0.955
MA0017.1	MA0017.1	0.00439
MA0018.2	MA0018.2	8.43162e-4
MA0019.1	MA0019.1	0.435
MA0024.1	MA0024.1	2.47799e-7
MA0025.1	MA0025.1	0.837
MA0027.1	MA0027.1	0.337
MA0028.1	MA0028.1	1.07258e-4
MA0029.1	MA0029.1	0.61
MA0030.1	MA0030.1	0.0122
MA0031.1	MA0031.1	0.0191
MA0035.2	MA0035.2	0.305
MA0038.1	MA0038.1	2.49317e-4
MA0039.2	MA0039.2	0.902
MA0040.1	MA0040.1	0.352
MA0041.1	MA0041.1	0.266
MA0042.1	MA0042.1	0.822
MA0043.1	MA0043.1	0.712
MA0046.1	MA0046.1	0.26
MA0047.2	MA0047.2	0.626
MA0048.1	MA0048.1	0.255
MA0050.1	MA0050.1	0.327
MA0051.1	MA0051.1	0.202
MA0052.1	MA0052.1	0.00551
MA0055.1	MA0055.1	0.182
MA0057.1	MA0057.1	0.562
MA0058.1	MA0058.1	0.00201
MA0059.1	MA0059.1	4.03269e-5
MA0060.1	MA0060.1	0.491
MA0061.1	MA0061.1	0.308
MA0062.2	MA0062.2	2.2347e-8
MA0065.2	MA0065.2	0.00226
MA0066.1	MA0066.1	0.228
MA0067.1	MA0067.1	0.613
MA0068.1	MA0068.1	9.80967e-4
MA0069.1	MA0069.1	0.355
MA0070.1	MA0070.1	0.815
MA0071.1	MA0071.1	0.013
MA0072.1	MA0072.1	0.415
MA0073.1	MA0073.1	0.613
MA0074.1	MA0074.1	0.84
MA0076.1	MA0076.1	3.47829e-5
MA0077.1	MA0077.1	0.395
MA0078.1	MA0078.1	0.495
MA0079.2	MA0079.2	0.331
MA0080.2	MA0080.2	7.70242e-13
MA0081.1	MA0081.1	0.00171
MA0083.1	MA0083.1	0.00248
MA0084.1	MA0084.1	0.365
MA0087.1	MA0087.1	0.234
MA0088.1	MA0088.1	0.00409
MA0090.1	MA0090.1	1.95069e-5
MA0091.1	MA0091.1	0.941
MA0092.1	MA0092.1	0.298
MA0093.1	MA0093.1	0.00711
MA0099.2	MA0099.2	0.00378
MA0100.1	MA0100.1	0.00124
MA0101.1	MA0101.1	0.694
MA0102.2	MA0102.2	0.158
MA0103.1	MA0103.1	0.582
MA0104.2	MA0104.2	4.13049e-5
MA0105.1	MA0105.1	0.00191
MA0106.1	MA0106.1	0.299
MA0107.1	MA0107.1	0.191
MA0108.2	MA0108.2	6.61195e-14
MA0111.1	MA0111.1	0.45
MA0112.2	MA0112.2	0.0229
MA0113.1	MA0113.1	0.735
MA0114.1	MA0114.1	0.00933
MA0115.1	MA0115.1	0.0176
MA0116.1	MA0116.1	1.97618e-5
MA0117.1	MA0117.1	0.979
MA0119.1	MA0119.1	0.574
MA0122.1	MA0122.1	0.362
MA0124.1	MA0124.1	0.371
MA0125.1	MA0125.1	0.49
MA0131.1	MA0131.1	0.299
MA0135.1	MA0135.1	0.918
MA0136.1	MA0136.1	3.49391e-22
MA0137.2	MA0137.2	0.0035
MA0138.2	MA0138.2	0.988
MA0139.1	MA0139.1	0.238
MA0140.1	MA0140.1	0.336
MA0141.1	MA0141.1	0.00634
MA0142.1	MA0142.1	0.123
MA0143.1	MA0143.1	0.518
MA0144.1	MA0144.1	0.377
MA0145.1	MA0145.1	0.561
MA0146.1	MA0146.1	0.18
MA0147.1	MA0147.1	1.42692e-5
MA0148.1	MA0148.1	0.334
MA0149.1	MA0149.1	0.151
MA0150.1	MA0150.1	0.851
MA0152.1	MA0152.1	0.334
MA0153.1	MA0153.1	0.0368
MA0154.1	MA0154.1	0.0301
MA0155.1	MA0155.1	0.88
MA0156.1	MA0156.1	6.73952e-16
MA0157.1	MA0157.1	0.361
MA0159.1	MA0159.1	0.0573
MA0160.1	MA0160.1	0.0404
MA0162.1	MA0162.1	0.666
MA0163.1	MA0163.1	2.86522e-15
MA0164.1	MA0164.1	0.564
MA0258.1	MA0258.1	0.0685
MA0259.1	MA0259.1	0.0341

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13058

Novel motif	Logo	P-value
1	1	0.00947
10	10	0.00827
100	100	0.312
101	101	0.262
102	102	0.347
103	103	0.372
104	104	0.943
105	105	0.27
106	106	0.579
107	107	0.366
108	108	0.982
109	109	0.0485
11	11	0.0493
110	110	0.0643
111	111	0.0095
112	112	0.179
113	113	0.556
114	114	0.0683
115	115	0.595
116	116	0.279
117	117	0.0119
118	118	0.0883
119	119	0.675
12	12	0.994
120	120	0.233
121	121	0.674
122	122	0.994
123	123	0.162
124	124	0.0625
125	125	0.0169
126	126	0.0873
127	127	0.0713
128	128	0.511
129	129	0.555
13	13	0.0222
130	130	0.75
131	131	0.259
132	132	0.45
133	133	0.899
134	134	0.844
135	135	0.37
136	136	0.214
137	137	0.126
138	138	0.449
139	139	0.398
14	14	0.975
140	140	0.0751
141	141	0.494
142	142	0.606
143	143	0.228
144	144	0.672
145	145	0.949
146	146	0.841
147	147	0.158
148	148	0.0691
149	149	0.539
15	15	0.0743
150	150	0.841
151	151	0.924
152	152	0.084
153	153	0.304
154	154	0.844
155	155	0.2
156	156	0.868
157	157	0.171
158	158	0.853
159	159	0.892
16	16	0.641
160	160	0.209
161	161	0.0377
162	162	0.834
163	163	0.389
164	164	0.0804
165	165	0.0789
166	166	0.256
167	167	0.25
168	168	0.733
169	169	0.228
17	17	0.712
18	18	0.304
19	19	0.486
2	2	0.726
20	20	0.744
21	21	0.0255
22	22	0.68
23	23	0.24
24	24	0.0227
25	25	0.153
26	26	0.0656
27	27	0.413
28	28	0.85
29	29	0.036
3	3	0.0634
30	30	0.2
31	31	0.634
32	32	0.621
33	33	0.422
34	34	0.887
35	35	0.248
36	36	0.0417
37	37	0.301
38	38	0.31
39	39	0.347
4	4	0.0957
40	40	0.167
41	41	0.336
42	42	0.209
43	43	0.498
44	44	0.0122
45	45	0.453
46	46	0.0941
47	47	0.0454
48	48	0.0255
49	49	0.284
5	5	0.575
50	50	0.904
51	51	0.885
52	52	0.154
53	53	0.738
54	54	0.895
55	55	0.634
56	56	0.81
57	57	0.0696
58	58	0.153
59	59	0.387
6	6	0.303
60	60	0.971
61	61	0.0366
62	62	0.0857
63	63	0.467
64	64	0.107
65	65	0.967
66	66	0.278
67	67	0.399
68	68	0.724
69	69	0.576
7	7	0.09
70	70	0.916
71	71	0.00831
72	72	0.718
73	73	0.586
74	74	0.282
75	75	0.00869
76	76	0.57
77	77	0.79
78	78	0.0305
79	79	0.829
8	8	0.0436
80	80	0.874
81	81	0.127
82	82	0.482
83	83	0.68
84	84	0.566
85	85	0.382
86	86	0.383
87	87	0.235
88	88	0.43
89	89	0.37
9	9	0.56
90	90	0.184
91	91	0.97
92	92	0.694
93	93	0.172
94	94	0.387
95	95	0.0756
96	96	0.554
97	97	0.304
98	98	0.304
99	99	0.368

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13058

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00004814
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX007816;DRR008688;DRZ000113;DRZ001498;DRZ011463;DRZ012848
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.35!220.79!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.16!145.17!SPI1;;chr1:92949331..92949377,-!p2@GFI1!2.01!100.23!GFI1;;chr7:50344289..50344323,+!p1@IKZF1!1.98!93.59!IKZF1;;chr6:135502408..135502459,+!p2@MYB!1.93!95.94!MYB;;chr6:135502501..135502546,+!p1@MYB!1.84!80.89!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.76!228.80!CEBPA;;chr7:137620650..137620677,-!p3@CREB3L2!1.74!53.54!CREB3L2;;chr7:115670804..115670825,-!p1@TFEC!1.72!51.58!TFEC;;chr12:54694758..54694805,-!p1@NFE2!1.71!60.77!NFE2;;chr21:34442439..34442455,+!p1@OLIG1!1.70!49.24!OLIG1;;chr19:13213662..13213686,-!p1@LYL1!1.69!69.56!LYL1;;chr14:75988771..75988826,+!p1@BATF!1.67!59.98!BATF;;chr16:85932760..85932775,+!p1@IRF8!1.61!39.66!IRF8;;chr1:92951607..92951661,-!p1@GFI1!1.58!37.12!GFI1;;chr7:27224842..27224872,-!p1@HOXA11!1.57!35.95!HOXA11;;chr12:54778471..54778528,-!p1@ZNF385A!1.56!35.37!ZNF385A;;chr12:54694807..54694832,-!p3@NFE2!1.53!33.22!NFE2;;chr7:137620684..137620711,-!p4@CREB3L2!1.44!26.57!CREB3L2;;chr7:27205136..27205164,-!p1@HOXA9!1.44!26.38!HOXA9;;chr7:27224795..27224840,-!p2@HOXA11!1.38!23.06!HOXA11;;chr21:34442540..34442560,+!p2@OLIG1!1.32!19.73!OLIG1;;chr10:31288398..31288455,-!p2@ZNF438!1.29!21.49!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.29!18.56!PLEK;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.80!HOXA10;;chr11:47400062..47400077,-!p2@SPI1!1.22!15.63!SPI1;;chr2:60780607..60780624,-!p2@BCL11A!1.20!45.13!BCL11A;;chr2:239148671..239148686,-!p1@HES6!1.18!51.97!HES6;;chr2:172949484..172949522,+!p1@DLX1!1.18!14.26!DLX1;;chr19:13213954..13214021,-!p4@LYL1!1.17!13.68!LYL1;;chr12:54694653..54694672,-!p2@NFE2!1.17!13.68!NFE2;;chr13:72441315..72441454,-!p1@DACH1!1.14!25.60!DACH1;;chr2:100759037..100759058,-!p2@AFF3!1.14!12.90!AFF3;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.70!HOXA3;;chr7:128577972..128578047,+!p1@IRF5!1.13!19.93!IRF5;;chr2:200322654..200322707,-!p2@SATB2!1.13!18.17!SATB2;;chr6:135502472..135502489,+!p3@MYB!1.12!12.11!MYB;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.32!ZEB2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.10!11.53!HOXC5;;chr2:145277640..145277771,-!p1@ZEB2!1.08!147.52!ZEB2;;chr10:31288370..31288393,-!p3@ZNF438!1.08!11.14!ZNF438;;chr11:19262461..19262476,-!p5@E2F8!1.08!11.14!E2F8;;chr1:92952473..92952489,-!p3@GFI1!1.08!11.14!GFI1;;chr7:27205106..27205134,-!p2@HOXA9!1.08!10.94!HOXA9;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.55!IKZF1;;chr2:200320768..200320800,-!p4@SATB2!1.06!10.36!SATB2;;chr3:18486354..18486377,-!p2@SATB1!1.05!12.90!SATB1;;chr2:60778035..60778060,-!p4@BCL11A!1.05!12.31!BCL11A;;chr11:47399996..47400014,-!p4@SPI1!1.02!9.57!SPI1;;chr6:135516877..135516900,+!p5@MYB!1.01!9.18!MYB;;chr11:128563948..128564003,+!p1@FLI1!1.00!111.76!FLI1;;chr7:50343634..50343717,+!p2@IKZF1!1.00!8.99!IKZF1;;chr1:92949505..92949543,-!p5@GFI1!1.00!8.99!GFI1;;chr20:42295745..42295765,+!p1@MYBL2!0.98!142.44!MYBL2;;chr19:13213704..13213726,-!p3@LYL1!0.98!11.33!LYL1;;chr11:19263160..19263176,-!p1@E2F8!0.95!9.38!E2F8;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.82!SPI1;;chr2:100759010..100759035,-!p1@AFF3!0.95!7.82!AFF3;;chr20:42295713..42295738,+!p2@MYBL2!0.94!47.09!MYBL2;;chr2:60780753..60780800,-!p1@BCL11A!0.94!38.88!BCL11A;;chr7:27239703..27239715,-!p1@HOXA13!0.94!7.62!HOXA13;;chr14:75988831..75988847,+!p2@BATF!0.90!7.03!BATF;;chr13:79177703..79177729,-!p2@POU4F1!0.90!7.03!POU4F1;;chr13:41593425..41593480,-!p1@ELF1!0.88!44.55!ELF1;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.81!RUNX1;;chr1:23857698..23857733,-!p1@E2F2!0.88!12.50!E2F2;;chr2:102091566..102091581,-!p1@RFX8!0.87!6.45!RFX8;;chr11:47399947..47399961,-!p3@SPI1!0.87!6.45!SPI1;;chr9:77112244..77112262,+!p1@RORB!0.86!7.03!RORB;;chr11:19263192..19263222,-!p2@E2F8!0.85!7.62!E2F8;;chr12:48298785..48298828,-!p1@VDR!0.82!32.04!VDR;;chr17:41277372..41277418,-!p1@BRCA1!0.82!21.69!BRCA1;;chr8:145669791..145669834,-!p1@TONSL!0.82!17.19!TONSL;;chr2:200322711..200322722,-!p10@SATB2!0.82!5.67!SATB2;;chr16:54320675..54320715,-!p1@IRX3!0.79!11.92!IRX3;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.06!SNAI3;;chr6:144385698..144385742,-!p2@PLAGL1!0.78!6.25!PLAGL1;;chr6:135513595..135513617,+!p4@MYB!0.78!5.08!MYB;;chr11:19262421..19262455,-!p3@E2F8!0.78!5.08!E2F8;;chr13:79177674..79177701,-!p1@POU4F1!0.77!4.88!POU4F1;;chr6:135516909..135516925,+!p6@MYB!0.77!4.88!MYB;;chr1:25256756..25256774,-!p1@RUNX3!0.76!9.38!RUNX3;;chr6:20402102..20402152,+!p1@E2F3!0.74!20.32!E2F3;;chr11:47400032..47400043,-!p5@SPI1!0.74!4.49!SPI1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.49!HOXC5;;chr2:113977697..113977733,-!p6@PAX8!0.74!4.49!PAX8;;chr17:41623692..41623715,-!p1@ETV4!0.73!20.52!ETV4;;chr2:66662281..66662308,+!p1@MEIS1!0.72!16.22!MEIS1;;chr19:47538560..47538591,+!p2@NPAS1!0.72!4.30!NPAS1;;chr20:50159198..50159299,-!p1@NFATC2!0.71!6.25!NFATC2;;chr10:31146746..31146755,-!p14@ZNF438!0.71!4.10!ZNF438;;chr12:54380404..54380433,+!p3@HOXC10!0.71!4.10!HOXC10;;chr12:54694738..54694749,-!p5@NFE2!0.71!4.10!NFE2;;chr5:176738887..176738934,-!p1@MXD3!0.70!30.48!MXD3;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.59!HMGA1;;chr6:31126291..31126399,+!p1@TCF19!0.69!42.20!TCF19;;chr10:94449675..94449694,+!p2@HHEX!0.69!11.53!HHEX;;chr16:54320646..54320672,-!p2@IRX3!0.69!6.25!IRX3;;chr12:2986275..2986363,-!p1@FOXM1!0.68!43.57!FOXM1;;chr1:45805872..45805900,+!p2@TOE1!0.68!10.16!TOE1;;chr17:42295897..42295953,-!p10@UBTF!0.67!5.08!UBTF;;chr1:167298384..167298412,+!p3@POU2F1!0.67!3.71!POU2F1;;chr5:138609782..138609826,+!p5@MATR3!0.66!26.77!MATR3;;chr1:212873267..212873332,-!p1@BATF3!0.66!5.08!BATF3;;chr1:156470515..156470542,-!p2@MEF2D!0.65!20.91!MEF2D;;chr2:208031943..208031978,-!p5@KLF7!0.65!4.88!KLF7;;chr1:156460436..156460462,-!p7@MEF2D!0.65!3.52!MEF2D;;chr6:28304275..28304282,-!p7@ZNF323!0.65!3.52!ZNF323;;chr7:27196217..27196246,-!p2@HOXA7!0.65!3.52!HOXA7;;chr7:27205043..27205050,-!p5@HOXA9!0.65!3.52!HOXA9;;chr8:128748470..128748487,+!p1@MYC!0.64!444.12!MYC;;chr19:45579725..45579743,-!p1@ZNF296!0.64!17.39!ZNF296;;chr7:64126535..64126559,+!p2@ZNF107!0.64!8.01!ZNF107;;chr5:134369905..134369972,-!p1@PITX1!0.64!5.47!PITX1;;chr1:25291475..25291511,-!p2@RUNX3!0.64!3.32!RUNX3;;chr17:79881332..79881348,-!p3@MAFG!0.63!5.08!MAFG;;chr7:64254834..64254854,+!p2@ZNF138!0.62!6.25!ZNF138;;chr12:11802547..11802560,+!p5@ETV6!0.62!4.69!ETV6;;chr12:54380036..54380091,+!p4@HOXC10!0.62!3.13!HOXC10;;chr17:42295682..42295731,-!p17@UBTF!0.62!3.13!UBTF;;chr1:158978768..158978800,+!p8@IFI16!0.62!3.13!IFI16;;chr21:40032884..40032915,-!p2@ERG!0.62!3.13!ERG;;chr9:77112225..77112238,+!p2@RORB!0.62!3.13!RORB;;chr4:4291861..4291913,-!p1@LYAR!0.61!84.60!LYAR;;chr14:55493763..55493824,-!p1@WDHD1!0.61!27.55!WDHD1;;chr2:66662249..66662267,+!p2@MEIS1!0.61!13.87!MEIS1;;chr16:54320158..54320200,-!p5@IRX3!0.61!4.69!IRX3;;chr19:45579762..45579772,-!p2@ZNF296!0.61!3.52!ZNF296;;chr7:64363638..64363667,+!p1@ZNF273!0.60!17.98!ZNF273;;chr10:94449703..94449718,+!p1@HHEX!0.60!13.48!HHEX;;chr6:42419649..42419673,-!p3@TRERF1!0.60!5.67!TRERF1;;chr6:34204642..34204664,+!p2@HMGA1!0.59!477.72!HMGA1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.59!7.23!SOHLH2;;chr20:31350184..31350200,+!p1@DNMT3B!0.59!6.84!DNMT3B;;chr1:167298300..167298319,+!p2@POU2F1!0.59!2.93!POU2F1;;chr1:212873200..212873230,-!p5@BATF3!0.59!2.93!BATF3;;chr18:55102598..55102623,+!p1@ONECUT2!0.59!2.93!ONECUT2;;chr2:200322723..200322739,-!p6@SATB2!0.59!2.93!SATB2;;chr2:60780730..60780742,-!p5@BCL11A!0.59!2.93!BCL11A;;chr14:45722360..45722415,-!p1@MIS18BP1!0.58!53.34!MIS18BP1;;chr9:137217986..137218049,+!p3@RXRA!0.58!9.38!RXRA;;chr15:57511609..57511651,+!p2@TCF12!0.58!5.28!TCF12;;chr1:35656508..35656584,-!p2@SFPQ!0.57!10.16!SFPQ;;chr16:54320617..54320643,-!p3@IRX3!0.57!3.71!IRX3;;chr16:88752861..88752884,-!p2@SNAI3!0.57!2.74!SNAI3;;chr17:41277334..41277348,-!p6@BRCA1!0.57!2.74!BRCA1;;chr2:102091144..102091183,-!p2@RFX8!0.57!2.74!RFX8;;chr6:135516978..135516993,+!p7@MYB!0.57!2.74!MYB;;chr1:92950138..92950159,-!p4@GFI1!0.57!2.74!GFI1;;chr16:29817789..29817838,+!p2@MAZ!0.56!44.74!MAZ;;chr4:4291837..4291859,-!p2@LYAR!0.56!10.36!LYAR;;chr6:44233252..44233296,-!p1@NFKBIE!0.55!31.85!NFKBIE;;chr1:246729544..246729572,-!p1@TFB2M!0.55!30.87!TFB2M;;chr7:150974206..150974255,-!p1@SMARCD3!0.55!19.54!SMARCD3;;chr6:34205372..34205412,+!p5@HMGA1!0.55!15.83!HMGA1;;chr1:212873084..212873137,-!p2@BATF3!0.55!2.54!BATF3;;chr10:131762589..131762601,-!p3@EBF3!0.55!2.54!EBF3;;chr10:31288329..31288353,-!p7@ZNF438!0.55!2.54!ZNF438;;chr12:54380112..54380126,+!p5@HOXC10!0.55!2.54!HOXC10;;chr12:54691711..54691725,-!p7@NFE2!0.55!2.54!NFE2;;chr2:60781201..60781258,-!p3@BCL11A!0.55!2.54!BCL11A;;chr3:63953435..63953499,+!p1@ATXN7!0.55!2.54!ATXN7;;chrX:147582130..147582147,+!p3@AFF2!0.55!2.54!AFF2;;chr1:226595726..226595737,-!p2@PARP1!0.54!7.03!PARP1;;chr15:96875657..96875760,+!p14@NR2F2!0.54!4.49!NR2F2;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.54!4.49!PCBP2;;chr17:42295777..42295816,-!p7@UBTF!0.54!3.13!UBTF;;chr12:51157837..51157892,+!p1@ATF1!0.53!67.41!ATF1;;chr13:46549911..46549956,-!p3@ZC3H13!0.53!3.71!ZC3H13;;chr13:114238997..114239077,+!p1@TFDP1!0.52!152.60!TFDP1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.52!13.09!TAL1;;chrX:129244840..129244881,-!p2@ELF4!0.52!10.94!ELF4;;chr13:46543725..46543747,-!p2@ZC3H13!0.52!5.08!ZC3H13;;chr1:25256439..25256476,-!p3@RUNX3!0.52!2.34!RUNX3;;chr17:48045917..48045977,+!p1@DLX4!0.52!2.34!DLX4;;chr2:200322229..200322251,-!p3@SATB2!0.52!2.34!SATB2;;chr2:60778062..60778075,-!p6@BCL11A!0.52!2.34!BCL11A;;chr3:157824001..157824078,-!p2@SHOX2!0.52!2.34!SHOX2;;chr19:926001..926046,+!p1@ARID3A!0.51!9.57!ARID3A;;chr16:1429627..1429662,-!p2@UNKL!0.51!8.01!UNKL;;chr1:249153232..249153251,-!p2@ZNF692!0.51!6.25!ZNF692;;chr18:51750414..51750449,-!p5@MBD2!0.51!5.08!MBD2;;chr6:20402070..20402082,+!p5@E2F3!0.51!2.74!E2F3;;chr1:156470494..156470505,-!p3@MEF2D!0.50!3.52!MEF2D;;chr2:219524193..219524205,-!p3@ZNF142!0.50!2.74!ZNF142;;chr6:126240463..126240489,+!p6@NCOA7!0.50!2.54!NCOA7;;chr1:156460473..156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+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=FF:0101035
 |fonse_cell_line_closure=FF:0101035
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aU-937%2520DE-4.CNhs13058.10834-111D6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aU-937%2520DE-4.CNhs13058.10834-111D6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aU-937%2520DE-4.CNhs13058.10834-111D6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aU-937%2520DE-4.CNhs13058.10834-111D6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aU-937%2520DE-4.CNhs13058.10834-111D6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10834-111D6
 |is_a=EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
+|library_id=CNhs13058
+|library_id_phase_based=2:CNhs13058
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10834
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10834
 |name=acute myeloid leukemia (FAB M5) cell line:U-937 DE-4
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13058,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=111
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=126.3906
 |sample_age=37
+|sample_category=cell lines
 |sample_cell_catalog=RCB0435
 |sample_cell_line=U-937 DE-4
@@ Line 80: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10834-111D6;search_select_hide=table117:FF:10834-111D6
 }}

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FF:10834-111D6: Difference between revisions - resource_browser

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FF:10834-111D6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:08, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0