FF:1271-21F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004920 | |||
|accession_numbers=CAGE;DRX009086;DRR009960;DRZ001385;DRZ002768;DRZ012735;DRZ014118 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002106,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002106,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:87425854..87425891,+!p1@Klf1!1.90!78.89!Klf1;;chr19:45225149..45225186,+!p1@Tlx1!1.88!74.82!Tlx1;;chr10:22539932..22539956,-!p1@Tcf21!1.84!175.38!Tcf21;;chr15:103085660..103085681,-!p1@Nfe2!1.75!81.86!Nfe2;;chr2:28477452..28477483,-!p1@Gfi1b!1.72!63.34!Gfi1b;;chrX:7544943..7545001,-!p1@Gata1!1.58!36.85!Gata1;;chr11:11584970..11585030,+!p2@Ikzf1!1.54!47.22!Ikzf1;;chr4:114732112..114732158,+!p1@Tal1!1.53!69.63!Tal1;;chr5:42155788..42155800,-!p1@Nkx3-2!1.52!32.04!Nkx3-2;;chr7:122989594..122989626,-!p1@Sox6!1.50!30.56!Sox6;;chr17:26978409..26978442,-!p1@Nkx2-5!1.46!28.15!Nkx2-5;;chr10:88145766..88145770,-!p1@Spic!1.42!32.78!Spic;;chr7:122989632..122989668,-!p2@Sox6!1.42!25.19!Sox6;;chr17:26978521..26978536,-!p2@Nkx2-5!1.33!20.56!Nkx2-5;;chr9:96159147..96159204,+!p2@Tfdp2!1.31!35.74!Tfdp2;;chr2:104966766..104966786,+!p1@Wt1!1.27!27.59!Wt1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.24!16.48!Nkx2-3;;chr15:103085690..103085710,-!p3@Nfe2!1.23!17.22!Nfe2;;chr15:103082088..103082136,-!p2@Nfe2!1.22!15.56!Nfe2;;chr19:45225276..45225304,+!p2@Tlx1!1.16!13.52!Tlx1;;chr4:87452200..87452229,-!p2@Mllt3!1.14!27.41!Mllt3;;chr4:87452180..87452196,-!p3@Mllt3!1.07!21.11!Mllt3;;chr2:104966874..104966907,+!p2@Wt1!1.07!10.74!Wt1;;chr8:87225670..87225697,+!p2@Lyl1!1.04!29.45!Lyl1;;chr6:86619104..86619119,-!p1@Mxd1!1.03!79.45!Mxd1;;chr6:88143711..88143717,+!p2@Gata2!1.03!15.56!Gata2;;chr11:16908650..16908690,-!p1@Plek!1.02!59.08!Plek;;chr16:92826249..92826325,-!p1@Runx1!1.02!23.52!Runx1;;chr4:135728181..135728203,+!p2@E2f2!1.01!12.41!E2f2;;chr11:11586218..11586285,+!p1@Ikzf1!1.00!29.63!Ikzf1;;chr7:148452314..148452329,-!p1@Irf7!0.95!56.30!Irf7;;chr2:90936901..90936945,+!p1@Sfpi1!0.93!40.93!Sfpi1;;chr9:96159225..96159249,+!p5@Tfdp2!0.93!8.33!Tfdp2;;chr10:79884592..79884621,-!p5@Tcf3!0.93!7.59!Tcf3;;chr7:17642177..17642223,-!p3@Hif3a!0.92!7.22!Hif3a;;chr15:103085802..103085817,-!p4@Nfe2!0.90!8.70!Nfe2;;chr9:51021788..51021802,+!p1@Pou2af1!0.90!8.33!Pou2af1;;chr8:87225329..87225396,+!p1@Lyl1!0.89!26.85!Lyl1;;chr4:63064364..63064384,-!p1@Akna!0.87!19.82!Akna;;chr8:87225702..87225726,+!p3@Lyl1!0.87!13.33!Lyl1;;chr7:51787434..51787448,-!p1@Spib!0.86!9.07!Spib;;chr10:20880731..20880775,-!p2@Myb!0.85!13.15!Myb;;chr10:20880698..20880717,-!p3@Myb!0.84!9.63!Myb;;chr2:104966933..104966966,+!p3@Wt1!0.84!5.93!Wt1;;chr2:38570011..38570034,-!p1@Nr5a1!0.82!5.56!Nr5a1;;chr1:38721792..38721845,-!p1@Aff3!0.81!7.04!Aff3;;chr10:20880629..20880683,-!p1@Myb!0.80!16.48!Myb;;chr7:17642053..17642066,-!p2@Hif3a!0.80!7.78!Hif3a;;chr9:96159116..96159130,+!p6@Tfdp2!0.80!6.85!Tfdp2;;chr2:38567715..38567730,-!p2@Nr5a1!0.79!5.19!Nr5a1;;chr4:135728581..135728668,+!p1@E2f2!0.76!24.82!E2f2;;chr11:100683839..100683890,-!p2@Stat5b!0.76!12.04!Stat5b;;chr2:90936947..90936977,+!p2@Sfpi1!0.75!9.63!Sfpi1;;chr9:96159210..96159221,+!p10@Tfdp2!0.75!4.63!Tfdp2;;chr7:122989676..122989687,-!p8@Sox6!0.75!4.63!Sox6;;chr2:173044380..173044432,-!p1@Zbp1!0.74!11.48!Zbp1;;chr1:14746065..14746079,-!p1@Msc!0.74!5.56!Msc;;chr1:52176315..52176343,+!p1@Stat1!0.73!70.19!Stat1;;chr7:17647736..17647772,-!p1@Hif3a!0.73!17.04!Hif3a;;chr2:90922554..90922575,+!p4@Sfpi1!0.73!8.52!Sfpi1;;chr11:11585912..11585950,+!p6@Ikzf1!0.73!5.74!Ikzf1;;chr6:83301229..83301242,+!p3@Bola3!0.72!4.26!Bola3;;chr17:26978449..26978458,-!p3@Nkx2-5!0.72!4.26!Nkx2-5;;chr4:135728473..135728494,+!p5@E2f2!0.71!4.07!E2f2;;chr2:19367259..19367278,+!p1@Ptf1a!0.71!4.07!Ptf1a;;chr11:23980664..23980706,+!p2@Bcl11a!0.70!19.45!Bcl11a;;chr7:77505617..77505632,-!p1@Nr2f2!0.69!205.94!Nr2f2;;chr10:30375579..30375616,-!p3@Ncoa7!0.69!10.00!Ncoa7;;chr2:164228702..164228719,+!p1@Rbpjl!0.69!3.89!Rbpjl;;chr2:167363692..167363710,+!p1@Snai1!0.67!51.48!Snai1;;chr3:135271185..135271254,-!p4@Nfkb1!0.67!7.22!Nfkb1;;chr4:114729957..114730012,+!p3@Tal1!0.67!3.70!Tal1;;chr4:44723559..44723593,-!p1@Pax5!0.67!3.70!Pax5;;chr2:104966662..104966673,+!p4@Wt1!0.66!3.52!Wt1;;chr1:87546583..87546595,+!p1@Sp100!0.65!5.19!Sp100;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.64!5.74!Ncoa4;;chr11:120491440..120491474,-!p3@Mafg!0.64!5.19!Mafg;;chr14:47896467..47896523,-!p1@Wdhd1!0.63!47.04!Wdhd1;;chrX:45245679..45245702,-!p1@Smarca1!0.63!16.85!Smarca1;;chr2:152758901..152758925,-!p1@Foxs1!0.63!16.85!Foxs1;;chr6:99216488..99216534,-!p2@Foxp1!0.63!10.56!Foxp1;;chr8:123260252..123260264,+!p1@Irf8!0.62!26.11!Irf8;;chr6:29476690..29476724,+!p1@Irf5!0.62!17.04!Irf5;;chr5:65203599..65203617,+!p8@Klf3!0.62!5.74!Klf3;;chr13:30841099..30841116,+!p1@Irf4!0.62!5.37!Irf4;;chr2:90936978..90937023,+!p3@Sfpi1!0.61!6.48!Sfpi1;;chr8:124806048..124806094,+!p1@Zfpm1!0.60!32.78!Zfpm1;;chr14:56223010..56223067,+!p1@Irf9!0.60!27.96!Irf9;;chr2:162880327..162880385,+!p2@Mybl2!0.60!23.70!Mybl2;;chr17:33766353..33766393,+!p2@Zfp414!0.60!9.44!Zfp414;;chr7:87170879..87170914,+!p2@Zfp710!0.60!7.78!Zfp710;;chr6:39068163..39068176,-!p2@Parp12!0.60!6.30!Parp12;;chr4:134708451..134708469,+!p1@Runx3!0.60!5.74!Runx3;;chr4:87452236..87452249,-!p9@Mllt3!0.60!2.96!Mllt3;;chr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parg;;chr6:115311270..115311298,+!p1@Pparg!0.13!0.93!Pparg;;chr4:82151126..82151133,-!p8@Nfib!0.13!0.74!Nfib;;chr4:6918396..6918411,-!p4@Tox!0.13!0.74!Tox;;chr1:120950269..120950287,-!p6@Gli2!0.13!0.74!Gli2;;chrX:48559029..48559051,-!p7@Mbnl3!0.13!0.74!Mbnl3;;chr9:96159689..96159696,+!p13@Tfdp2!0.13!0.56!Tfdp2;;chr7:52472041..52472065,+!p2@Tead2!0.13!0.56!Tead2;;chr16:43510301..43510313,+!p24@Zbtb20!0.13!0.56!Zbtb20;;chr4:126698555..126698583,+!p1@Sfpq!0.12!649.85!Sfpq;;chr11:80196811..80196838,+!p1@Zfp207!0.12!210.01!Zfp207;;chr3:151873433..151873498,+!p1@Fubp1!0.12!156.67!Fubp1;;chr16:30065419..30065437,+!p1@Hes1!0.12!63.34!Hes1;;chr6:83299445..83299490,+!p1@Bola3!0.12!50.19!Bola3;;chr13:56804344..56804473,+!p1@Smad5!0.12!35.56!Smad5;;chr2:119722948..119723028,+!p1@Mga!0.12!34.08!Mga;;chr1:92949999..92950097,+!p1@Lrrfip1!0.12!31.30!Lrrfip1;;chr5:25004592..25004630,-!p2@Mll3!0.12!23.52!Mll3;;chr15:102236700..102236764,+!p1@Sp1!0.12!17.22!Sp1;;chr11:100711801..100711910,-!p1@Stat5b!0.12!15.74!Stat5b;;chrX:20639107..20639188,-!p1@Zfp182!0.12!14.82!Zfp182;;chr15:81494344..81494388,+!p1@L3mbtl2!0.12!13.15!L3mbtl2;;chr2:17986272..17986332,+!p2@Mllt10!0.12!11.67!Mllt10;;chr5:20387850..20387869,-!p1@Phtf2!0.12!11.48!Phtf2;;chr13:42147384..42147441,+!p1@Hivep1!0.12!10.74!Hivep1;;chr4:133801453..133801492,-!p1@Zfp593!0.12!9.26!Zfp593;;chr19:26679615..26679646,+!p3@Smarca2!0.12!7.41!Smarca2;;chr10:62328186..62328219,-!p1@Tet1!0.12!6.48!Tet1;;chr13:44826095..44826185,+!p4@Jarid2!0.12!5.19!Jarid2;;chr10:70700755..70700772,-!p2@Tfam!0.12!5.00!Tfam;;chr11:83943060..83943082,-!p2@Tada2a!0.12!4.63!Tada2a;;chr2:48805044..48805063,+!p3@Mbd5!0.12!4.44!Mbd5;;chr7:148513599..148513636,-!p3@Deaf1!0.12!3.89!Deaf1;;chr6:117813087..117813121,+!p1@Zfp239!0.12!3.70!Zfp239;;chr4:120498270..120498285,-!p3@Nfyc!0.12!3.70!Nfyc;;chr9:20297135..20297154,-!p2@Zfp426!0.12!3.52!Zfp426;;chr17:21520689..21520730,+!p1@Zfp677!0.12!3.33!Zfp677;;chr1:13362515..13362538,-!p2@Ncoa2!0.12!3.33!Ncoa2;;chr14:22319053..22319105,+!p2@Myst4!0.12!3.15!Myst4;;chr3:88753953..88754004,+!p1@Ash1l!0.12!3.15!Ash1l;;chr2:9800207..9800234,-!p1@Gata3!0.12!2.78!Gata3;;chr12:77471500..77471515,+!p2@Zbtb1!0.12!2.59!Zbtb1;;chr11:59285966..59285990,-!p2@Zfp867!0.12!2.22!Zfp867;;chr3:135354452..135354475,-!p5@Nfkb1!0.12!2.22!Nfkb1;;chr4:126700722..126700753,+!p4@Sfpq!0.12!2.04!Sfpq;;chr3:9610074..9610086,-!p2@Zfp704!0.12!2.04!Zfp704;;chr18:75979828..75979864,+!p2@Zbtb7c!0.12!1.85!Zbtb7c;;chr17:44872561..44872615,-!p1@Runx2!0.12!1.85!Runx2;;chr13:44825008..44825066,+!p5@Jarid2!0.12!1.48!Jarid2;;chrX:70587989..70588000,+!p3@Zfp275!0.12!1.48!Zfp275;;chr11:102179350..102179375,-!p7@Ubtf!0.12!1.48!Ubtf;;chr6:72849280..72849297,-!p6@Kcmf1!0.12!1.48!Kcmf1;;chr15:102076652..102076679,-!p4@Rarg!0.12!1.30!Rarg;;chrX:103124736..103124747,-!p6@Atrx!0.12!1.30!Atrx;;chr17:25151251..25151279,-!p4@Cramp1l!0.12!1.30!Cramp1l;;chr18:36953486..36953503,+!p2@Zmat2!0.12!1.11!Zmat2;;chr7:19945089..19945107,+!p2@Ppp1r13l!0.12!1.11!Ppp1r13l;;chr7:56136974..56136989,-!p4@E2f8!0.12!1.11!E2f8;;chr5:38611621..38611635,-!p2@Zbtb49!0.12!0.93!Zbtb49;;chr12:119540395..119540415,-!p5@Sp4!0.12!0.93!Sp4;;chr13:64254502..64254515,-!p3@Zfp367!0.12!0.93!Zfp367;;chr2:74542918..74542971,+!p1@Hoxd8!0.12!0.93!Hoxd8;;chr4:135840623..135840632,+!p5@Zfp46!0.12!0.74!Zfp46;;chr19:7342786..7342803,+!p2@Rcor2!0.12!0.74!Rcor2;;chr1:4486505..4486527,-!p5@Sox17!0.12!0.74!Sox17;;chr4:133312695..133312709,-!p19@Arid1a!0.12!0.56!Arid1a;;chr16:30066499..30066518,+!p5@Hes1!0.12!0.56!Hes1;;chr15:80085920..80085941,+!p1@Atf4!0.11!134.64!Atf4;; | |expression_enrichment_score=chr8:87425854..87425891,+!p1@Klf1!1.90!78.89!Klf1;;chr19:45225149..45225186,+!p1@Tlx1!1.88!74.82!Tlx1;;chr10:22539932..22539956,-!p1@Tcf21!1.84!175.38!Tcf21;;chr15:103085660..103085681,-!p1@Nfe2!1.75!81.86!Nfe2;;chr2:28477452..28477483,-!p1@Gfi1b!1.72!63.34!Gfi1b;;chrX:7544943..7545001,-!p1@Gata1!1.58!36.85!Gata1;;chr11:11584970..11585030,+!p2@Ikzf1!1.54!47.22!Ikzf1;;chr4:114732112..114732158,+!p1@Tal1!1.53!69.63!Tal1;;chr5:42155788..42155800,-!p1@Nkx3-2!1.52!32.04!Nkx3-2;;chr7:122989594..122989626,-!p1@Sox6!1.50!30.56!Sox6;;chr17:26978409..26978442,-!p1@Nkx2-5!1.46!28.15!Nkx2-5;;chr10:88145766..88145770,-!p1@Spic!1.42!32.78!Spic;;chr7:122989632..122989668,-!p2@Sox6!1.42!25.19!Sox6;;chr17:26978521..26978536,-!p2@Nkx2-5!1.33!20.56!Nkx2-5;;chr9:96159147..96159204,+!p2@Tfdp2!1.31!35.74!Tfdp2;;chr2:104966766..104966786,+!p1@Wt1!1.27!27.59!Wt1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.24!16.48!Nkx2-3;;chr15:103085690..103085710,-!p3@Nfe2!1.23!17.22!Nfe2;;chr15:103082088..103082136,-!p2@Nfe2!1.22!15.56!Nfe2;;chr19:45225276..45225304,+!p2@Tlx1!1.16!13.52!Tlx1;;chr4:87452200..87452229,-!p2@Mllt3!1.14!27.41!Mllt3;;chr4:87452180..87452196,-!p3@Mllt3!1.07!21.11!Mllt3;;chr2:104966874..104966907,+!p2@Wt1!1.07!10.74!Wt1;;chr8:87225670..87225697,+!p2@Lyl1!1.04!29.45!Lyl1;;chr6:86619104..86619119,-!p1@Mxd1!1.03!79.45!Mxd1;;chr6:88143711..88143717,+!p2@Gata2!1.03!15.56!Gata2;;chr11:16908650..16908690,-!p1@Plek!1.02!59.08!Plek;;chr16:92826249..92826325,-!p1@Runx1!1.02!23.52!Runx1;;chr4:135728181..135728203,+!p2@E2f2!1.01!12.41!E2f2;;chr11:11586218..11586285,+!p1@Ikzf1!1.00!29.63!Ikzf1;;chr7:148452314..148452329,-!p1@Irf7!0.95!56.30!Irf7;;chr2:90936901..90936945,+!p1@Sfpi1!0.93!40.93!Sfpi1;;chr9:96159225..96159249,+!p5@Tfdp2!0.93!8.33!Tfdp2;;chr10:79884592..79884621,-!p5@Tcf3!0.93!7.59!Tcf3;;chr7:17642177..17642223,-!p3@Hif3a!0.92!7.22!Hif3a;;chr15:103085802..103085817,-!p4@Nfe2!0.90!8.70!Nfe2;;chr9:51021788..51021802,+!p1@Pou2af1!0.90!8.33!Pou2af1;;chr8:87225329..87225396,+!p1@Lyl1!0.89!26.85!Lyl1;;chr4:63064364..63064384,-!p1@Akna!0.87!19.82!Akna;;chr8:87225702..87225726,+!p3@Lyl1!0.87!13.33!Lyl1;;chr7:51787434..51787448,-!p1@Spib!0.86!9.07!Spib;;chr10:20880731..20880775,-!p2@Myb!0.85!13.15!Myb;;chr10:20880698..20880717,-!p3@Myb!0.84!9.63!Myb;;chr2:104966933..104966966,+!p3@Wt1!0.84!5.93!Wt1;;chr2:38570011..38570034,-!p1@Nr5a1!0.82!5.56!Nr5a1;;chr1:38721792..38721845,-!p1@Aff3!0.81!7.04!Aff3;;chr10:20880629..20880683,-!p1@Myb!0.80!16.48!Myb;;chr7:17642053..17642066,-!p2@Hif3a!0.80!7.78!Hif3a;;chr9:96159116..96159130,+!p6@Tfdp2!0.80!6.85!Tfdp2;;chr2:38567715..38567730,-!p2@Nr5a1!0.79!5.19!Nr5a1;;chr4:135728581..135728668,+!p1@E2f2!0.76!24.82!E2f2;;chr11:100683839..100683890,-!p2@Stat5b!0.76!12.04!Stat5b;;chr2:90936947..90936977,+!p2@Sfpi1!0.75!9.63!Sfpi1;;chr9:96159210..96159221,+!p10@Tfdp2!0.75!4.63!Tfdp2;;chr7:122989676..122989687,-!p8@Sox6!0.75!4.63!Sox6;;chr2:173044380..173044432,-!p1@Zbp1!0.74!11.48!Zbp1;;chr1:14746065..14746079,-!p1@Msc!0.74!5.56!Msc;;chr1:52176315..52176343,+!p1@Stat1!0.73!70.19!Stat1;;chr7:17647736..17647772,-!p1@Hif3a!0.73!17.04!Hif3a;;chr2:90922554..90922575,+!p4@Sfpi1!0.73!8.52!Sfpi1;;chr11:11585912..11585950,+!p6@Ikzf1!0.73!5.74!Ikzf1;;chr6:83301229..83301242,+!p3@Bola3!0.72!4.26!Bola3;;chr17:26978449..26978458,-!p3@Nkx2-5!0.72!4.26!Nkx2-5;;chr4:135728473..135728494,+!p5@E2f2!0.71!4.07!E2f2;;chr2:19367259..19367278,+!p1@Ptf1a!0.71!4.07!Ptf1a;;chr11:23980664..23980706,+!p2@Bcl11a!0.70!19.45!Bcl11a;;chr7:77505617..77505632,-!p1@Nr2f2!0.69!205.94!Nr2f2;;chr10:30375579..30375616,-!p3@Ncoa7!0.69!10.00!Ncoa7;;chr2:164228702..164228719,+!p1@Rbpjl!0.69!3.89!Rbpjl;;chr2:167363692..167363710,+!p1@Snai1!0.67!51.48!Snai1;;chr3:135271185..135271254,-!p4@Nfkb1!0.67!7.22!Nfkb1;;chr4:114729957..114730012,+!p3@Tal1!0.67!3.70!Tal1;;chr4:44723559..44723593,-!p1@Pax5!0.67!3.70!Pax5;;chr2:104966662..104966673,+!p4@Wt1!0.66!3.52!Wt1;;chr1:87546583..87546595,+!p1@Sp100!0.65!5.19!Sp100;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.64!5.74!Ncoa4;;chr11:120491440..120491474,-!p3@Mafg!0.64!5.19!Mafg;;chr14:47896467..47896523,-!p1@Wdhd1!0.63!47.04!Wdhd1;;chrX:45245679..45245702,-!p1@Smarca1!0.63!16.85!Smarca1;;chr2:152758901..152758925,-!p1@Foxs1!0.63!16.85!Foxs1;;chr6:99216488..99216534,-!p2@Foxp1!0.63!10.56!Foxp1;;chr8:123260252..123260264,+!p1@Irf8!0.62!26.11!Irf8;;chr6:29476690..29476724,+!p1@Irf5!0.62!17.04!Irf5;;chr5:65203599..65203617,+!p8@Klf3!0.62!5.74!Klf3;;chr13:30841099..30841116,+!p1@Irf4!0.62!5.37!Irf4;;chr2:90936978..90937023,+!p3@Sfpi1!0.61!6.48!Sfpi1;;chr8:124806048..124806094,+!p1@Zfpm1!0.60!32.78!Zfpm1;;chr14:56223010..56223067,+!p1@Irf9!0.60!27.96!Irf9;;chr2:162880327..162880385,+!p2@Mybl2!0.60!23.70!Mybl2;;chr17:33766353..33766393,+!p2@Zfp414!0.60!9.44!Zfp414;;chr7:87170879..87170914,+!p2@Zfp710!0.60!7.78!Zfp710;;chr6:39068163..39068176,-!p2@Parp12!0.60!6.30!Parp12;;chr4:134708451..134708469,+!p1@Runx3!0.60!5.74!Runx3;;chr4:87452236..87452249,-!p9@Mllt3!0.60!2.96!Mllt3;;chr2:105003277..105003280,+!p5@Wt1!0.60!2.96!Wt1;;chr19:37509324..37509337,+!p1@Hhex!0.59!24.45!Hhex;;chr7:25917492..25917512,-!p1@Pou2f2!0.59!5.37!Pou2f2;;chr1:52065508..52065522,+!p2@Stat4!0.59!3.52!Stat4;;chr2:90922519..90922544,+!p6@Sfpi1!0.58!3.15!Sfpi1;;chr2:169458519..169458555,+!p2@Tshz2!0.57!13.33!Tshz2;;chr9:32503590..32503680,+!p1@Ets1!0.56!120.38!Ets1;;chr9:32348943..32349001,-!p1@Fli1!0.56!26.30!Fli1;;chr5:104183477..104183548,+!p6@Aff1!0.56!5.93!Aff1;;chr15:103085864..103085876,-!p5@Nfe2!0.56!2.59!Nfe2;;chr8:124806017..124806040,+!p2@Zfpm1!0.55!34.82!Zfpm1;;chr18:69681439..69681456,+!p7@Tcf4!0.55!7.78!Tcf4;;chr11:23978111..23978134,+!p3@Bcl11a!0.55!6.11!Bcl11a;;chr10:80598968..80599012,+!p5@Zbtb7a!0.55!3.52!Zbtb7a;;chr17:48015645..48015689,-!p9@Foxp4!0.55!3.52!Foxp4;;chr11:101413151..101413207,-!p1@Brca1!0.54!29.82!Brca1;;chr7:56136362..56136400,-!p1@E2f8!0.54!20.19!E2f8;;chr4:3865501..3865548,-!p1@Plag1!0.54!15.74!Plag1;;chr2:166888058..166888105,-!p2@Znfx1!0.54!9.63!Znfx1;;chr6:39068181..39068206,-!p3@Parp12!0.54!5.93!Parp12;;chr11:96153767..96153822,+!p1@Hoxb6!0.54!4.26!Hoxb6;;chr6:16848347..16848391,-!p1@Tfec!0.54!3.52!Tfec;;chr1:140739014..140739032,-!p1@Lhx9!0.54!3.33!Lhx9;;chr12:36219645..36219730,-!p1@Ahr!0.53!29.82!Ahr;;chr4:97444012..97444045,+!p4@Nfia!0.53!22.59!Nfia;;chr19:28754692..28754757,-!p1@Glis3!0.53!12.22!Glis3;;chr9:96159133..96159145,+!p9@Tfdp2!0.53!2.41!Tfdp2;;chr14:79915425..79915501,+!p1@Elf1!0.52!26.30!Elf1;;chr16:95680889..95680991,-!p1@Erg!0.52!24.08!Erg;;chr12:85534957..85535017,-!p2@C130039O16Rik!0.51!14.26!C130039O16Rik;;chr2:91034924..91034946,-!p2@Nr1h3!0.51!2.96!Nr1h3;;chr4:114732159..114732166,+!p6@Tal1!0.51!2.22!Tal1;;chr2:90936867..90936874,+!p7@Sfpi1!0.51!2.22!Sfpi1;;chr14:55330976..55330990,-!p1@Cebpe!0.51!2.22!Cebpe;;chr6:83301243..83301258,+!p2@Bola3!0.51!2.22!Bola3;;chr11:18918917..18918944,-!p1@Meis1!0.50!37.04!Meis1;;chr1:52176378..52176401,+!p3@Stat1!0.50!7.96!Stat1;;chr14:22807216..22807231,-!p3@Zfp503!0.50!4.26!Zfp503;;chr1:52065454..52065495,+!p1@Stat4!0.50!4.07!Stat4;;chr11:52096066..52096081,-!p2@Tcf7!0.50!2.78!Tcf7;;chr7:17642018..17642045,-!p4@Hif3a!0.50!2.59!Hif3a;;chr4:135736690..135736705,+!p6@E2f2!0.50!2.59!E2f2;;chr2:181406327..181406350,-!p1@Sox18!0.49!87.41!Sox18;;chrX:45245644..45245666,-!p2@Smarca1!0.49!8.33!Smarca1;;chr7:77511403..77511450,-!p3@Nr2f2!0.49!5.37!Nr2f2;;chr2:44968512..44968530,-!p1@Zeb2!0.48!60.00!Zeb2;;chr2:169458192..169458247,+!p1@Tshz2!0.48!23.89!Tshz2;;chr6:88148650..88148669,+!p1@Gata2!0.48!22.41!Gata2;;chr11:3191741..3191769,+!p5@Patz1!0.48!2.78!Patz1;;chr5:104183579..104183600,+!p9@Aff1!0.48!2.41!Aff1;;chr11:96976641..96976646,-!p1@Tbx21!0.48!2.04!Tbx21;;chr2:166868994..166869023,-!p7@Znfx1!0.48!2.04!Znfx1;;chr2:104966436..104966455,+!p7@Wt1!0.48!2.04!Wt1;;chr14:27813679..27813693,+!p2@Hesx1!0.48!2.04!Hesx1;;chr14:52948124..52948148,-!p7@Sall2!0.48!2.04!Sall2;;chr6:86619130..86619158,-!p2@Mxd1!0.47!37.78!Mxd1;;chr17:28487603..28487626,-!p2@Tead3!0.47!5.00!Tead3;;chr5:92391466..92391471,+!p2@Thap6!0.47!3.15!Thap6;;chr11:23978022..23978076,+!p1@Bcl11a!0.46!56.30!Bcl11a;;chr2:162880387..162880413,+!p1@Mybl2!0.46!16.11!Mybl2;;chr9:32349240..32349276,-!p2@Fli1!0.46!5.56!Fli1;;chr2:34227446..34227511,-!p1@Pbx3!0.46!5.37!Pbx3;;chr1:120879128..120879183,-!p3@Gli2!0.46!4.26!Gli2;;chr4:44723520..44723544,-!p2@Pax5!0.46!1.85!Pax5;;chr19:43686882..43686906,+!p2@Nkx2-3!0.46!1.85!Nkx2-3;;chr8:59799772..59799789,+!p1@Hand2!0.45!6.67!Hand2;;chr6:16848395..16848416,-!p2@Tfec!0.45!2.22!Tfec;;chr7:77511234..77511302,-!p2@Nr2f2!0.44!15.93!Nr2f2;;chr14:64562503..64562524,+!p1@Sox7!0.44!14.07!Sox7;;chr10:80870405..80870428,-!p4@Nfic!0.44!6.11!Nfic;;chr8:118231678..118231692,-!p2@Maf!0.43!21.67!Maf;;chr15:61816932..61816952,+!p2@Myc!0.43!19.82!Myc;;chr13:55431084..55431137,-!p1@Mxd3!0.43!18.33!Mxd3;;chr18:55150011..55150059,-!p3@Zfp608!0.43!7.41!Zfp608;;chr14:79915502..79915514,+!p4@Elf1!0.43!2.96!Elf1;;chr2:173044357..173044377,-!p2@Zbp1!0.43!2.78!Zbp1;;chr11:11590140..11590187,+!p3@Ikzf1!0.43!2.22!Ikzf1;;chr11:11590117..11590138,+!p4@Ikzf1!0.43!1.67!Ikzf1;;chr17:26978464..26978469,-!p4@Nkx2-5!0.43!1.67!Nkx2-5;;chr4:44723633..44723646,-!p3@Pax5!0.43!1.67!Pax5;;chr4:134676555..134676575,+!p2@Runx3!0.43!1.67!Runx3;;chr4:114730015..114730042,+!p7@Tal1!0.43!1.67!Tal1;;chrX:45807329..45807370,-!p1@Elf4!0.42!16.30!Elf4;;chr2:44965593..44965624,-!p3@Zeb2!0.42!12.78!Zeb2;;chr14:22807107..22807119,-!p2@Zfp503!0.42!9.82!Zfp503;;chr3:95021663..95021687,-!p3@Gabpb2!0.42!7.59!Gabpb2;;chr18:69681483..69681514,+!p11@Tcf4!0.42!3.33!Tcf4;;chr10:67599432..67599444,-!p4@Arid5b!0.42!3.15!Arid5b;;chr11:102178005..102178022,-!p8@Ubtf!0.42!3.15!Ubtf;;chr11:11585678..11585745,+!p5@Ikzf1!0.42!2.78!Ikzf1;;chr6:52163319..52163342,-!p1@Hoxa3!0.42!2.78!Hoxa3;;chr2:92886587..92886622,-!p3@Prdm11!0.42!2.78!Prdm11;;chr2:34227273..34227292,-!p4@Pbx3!0.42!1.85!Pbx3;;chr10:12810631..12810649,+!p1@Plagl1!0.41!60.56!Plagl1;;chr9:32443818..32443854,+!p2@Ets1!0.41!9.82!Ets1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parg;;chr6:115311270..115311298,+!p1@Pparg!0.13!0.93!Pparg;;chr4:82151126..82151133,-!p8@Nfib!0.13!0.74!Nfib;;chr4:6918396..6918411,-!p4@Tox!0.13!0.74!Tox;;chr1:120950269..120950287,-!p6@Gli2!0.13!0.74!Gli2;;chrX:48559029..48559051,-!p7@Mbnl3!0.13!0.74!Mbnl3;;chr9:96159689..96159696,+!p13@Tfdp2!0.13!0.56!Tfdp2;;chr7:52472041..52472065,+!p2@Tead2!0.13!0.56!Tead2;;chr16:43510301..43510313,+!p24@Zbtb20!0.13!0.56!Zbtb20;;chr4:126698555..126698583,+!p1@Sfpq!0.12!649.85!Sfpq;;chr11:80196811..80196838,+!p1@Zfp207!0.12!210.01!Zfp207;;chr3:151873433..151873498,+!p1@Fubp1!0.12!156.67!Fubp1;;chr16:30065419..30065437,+!p1@Hes1!0.12!63.34!Hes1;;chr6:83299445..83299490,+!p1@Bola3!0.12!50.19!Bola3;;chr13:56804344..56804473,+!p1@Smad5!0.12!35.56!Smad5;;chr2:119722948..119723028,+!p1@Mga!0.12!34.08!Mga;;chr1:92949999..92950097,+!p1@Lrrfip1!0.12!31.30!Lrrfip1;;chr5:25004592..25004630,-!p2@Mll3!0.12!23.52!Mll3;;chr15:102236700..102236764,+!p1@Sp1!0.12!17.22!Sp1;;chr11:100711801..100711910,-!p1@Stat5b!0.12!15.74!Stat5b;;chrX:20639107..20639188,-!p1@Zfp182!0.12!14.82!Zfp182;;chr15:81494344..81494388,+!p1@L3mbtl2!0.12!13.15!L3mbtl2;;chr2:17986272..17986332,+!p2@Mllt10!0.12!11.67!Mllt10;;chr5:20387850..20387869,-!p1@Phtf2!0.12!11.48!Phtf2;;chr13:42147384..42147441,+!p1@Hivep1!0.12!10.74!Hivep1;;chr4:133801453..133801492,-!p1@Zfp593!0.12!9.26!Zfp593;;chr19:26679615..26679646,+!p3@Smarca2!0.12!7.41!Smarca2;;chr10:62328186..62328219,-!p1@Tet1!0.12!6.48!Tet1;;chr13:44826095..44826185,+!p4@Jarid2!0.12!5.19!Jarid2;;chr10:70700755..70700772,-!p2@Tfam!0.12!5.00!Tfam;;chr11:83943060..83943082,-!p2@Tada2a!0.12!4.63!Tada2a;;chr2:48805044..48805063,+!p3@Mbd5!0.12!4.44!Mbd5;;chr7:148513599..148513636,-!p3@Deaf1!0.12!3.89!Deaf1;;chr6:117813087..117813121,+!p1@Zfp239!0.12!3.70!Zfp239;;chr4:120498270..120498285,-!p3@Nfyc!0.12!3.70!Nfyc;;chr9:20297135..20297154,-!p2@Zfp426!0.12!3.52!Zfp426;;chr17:21520689..21520730,+!p1@Zfp677!0.12!3.33!Zfp677;;chr1:13362515..13362538,-!p2@Ncoa2!0.12!3.33!Ncoa2;;chr14:22319053..22319105,+!p2@Myst4!0.12!3.15!Myst4;;chr3:88753953..88754004,+!p1@Ash1l!0.12!3.15!Ash1l;;chr2:9800207..9800234,-!p1@Gata3!0.12!2.78!Gata3;;chr12:77471500..77471515,+!p2@Zbtb1!0.12!2.59!Zbtb1;;chr11:59285966..59285990,-!p2@Zfp867!0.12!2.22!Zfp867;;chr3:135354452..135354475,-!p5@Nfkb1!0.12!2.22!Nfkb1;;chr4:126700722..126700753,+!p4@Sfpq!0.12!2.04!Sfpq;;chr3:9610074..9610086,-!p2@Zfp704!0.12!2.04!Zfp704;;chr18:75979828..75979864,+!p2@Zbtb7c!0.12!1.85!Zbtb7c;;chr17:44872561..44872615,-!p1@Runx2!0.12!1.85!Runx2;;chr13:44825008..44825066,+!p5@Jarid2!0.12!1.48!Jarid2;;chrX:70587989..70588000,+!p3@Zfp275!0.12!1.48!Zfp275;;chr11:102179350..102179375,-!p7@Ubtf!0.12!1.48!Ubtf;;chr6:72849280..72849297,-!p6@Kcmf1!0.12!1.48!Kcmf1;;chr15:102076652..102076679,-!p4@Rarg!0.12!1.30!Rarg;;chrX:103124736..103124747,-!p6@Atrx!0.12!1.30!Atrx;;chr17:25151251..25151279,-!p4@Cramp1l!0.12!1.30!Cramp1l;;chr18:36953486..36953503,+!p2@Zmat2!0.12!1.11!Zmat2;;chr7:19945089..19945107,+!p2@Ppp1r13l!0.12!1.11!Ppp1r13l;;chr7:56136974..56136989,-!p4@E2f8!0.12!1.11!E2f8;;chr5:38611621..38611635,-!p2@Zbtb49!0.12!0.93!Zbtb49;;chr12:119540395..119540415,-!p5@Sp4!0.12!0.93!Sp4;;chr13:64254502..64254515,-!p3@Zfp367!0.12!0.93!Zfp367;;chr2:74542918..74542971,+!p1@Hoxd8!0.12!0.93!Hoxd8;;chr4:135840623..135840632,+!p5@Zfp46!0.12!0.74!Zfp46;;chr19:7342786..7342803,+!p2@Rcor2!0.12!0.74!Rcor2;;chr1:4486505..4486527,-!p5@Sox17!0.12!0.74!Sox17;;chr4:133312695..133312709,-!p19@Arid1a!0.12!0.56!Arid1a;;chr16:30066499..30066518,+!p5@Hes1!0.12!0.56!Hes1;;chr15:80085920..80085941,+!p1@Atf4!0.11!134.64!Atf4;; | ||
Line 41: | Line 44: | ||
|is_a=EFO:0002091;;FF:0011517 | |is_a=EFO:0002091;;FF:0011517 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11011 | |||
|library_id_phase_based=2:CNhs11011 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1271 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1271 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E18.CNhs11011.1271-21F2.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E18.CNhs11011.1271-21F2.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E18.CNhs11011.1271-21F2.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E18.CNhs11011.1271-21F2.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E18.CNhs11011.1271-21F2.mm9.nobarcode.rdna.fa.gz | |||
|name=spleen, embryo E18 | |name=spleen, embryo E18 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11011,LSID730,release008,COMPLETED | |profile_hcage=CNhs11011,LSID730,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.0124788369739747,0,0.00237424948465421,0,0,0,0.058079096192185,0,0.0368948187299337,0,0,0.156404176343788,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0737896374598673,0,0,0,0,0,0,0.162519530903479,0,0,0,0.0737896374598673,0,0.150300644995254,-0.0660723386166493,0.180216837199013,0.118471154476478,-0.0779752871277767,0,0,0,0,0,0,0,0,0,0,0.191893350882575,0,-0.0660055475634404,0.0737896374598673,0,0,0.0737896374598673,0.0990387161451143,0,-0.0103248570806218,0.191893350882575,0.482464783170982,0.00837753965492648,0.0333585226224696,0.221788884897145,-0.0843014053112152,0.0471975002250055,0,0.0737896374598673,-0.0343435772730296,-0.00339923071064852,0.284650112617126,0,0,-0.108253654460124,-0.040491100158494,-0.00504195738004014,0,0,0,0,0.0368948187299337,0,-0.0417740847988257,0.123202162798746,-0.0706468722424072,0.0114833154431302,0,0,0,0.0056601731069681 | |||
|rna_box=21 | |rna_box=21 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 61: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 97: | ||
|top_motifs=GATA6:2.44516528449;IRF7:1.86094369719;SPIB:1.65978599157;E2F1..5:1.40949554745;ZNF423:1.37513320101;SPI1:1.12980889226;ELF1,2,4:1.11448195914;ETS1,2:1.04288599343;IKZF2:1.033989162;NKX2-2,8:1.01655813966;ZBTB16:1.00471825663;NFE2L2:0.982905170852;GFI1:0.934358676832;CEBPA,B_DDIT3:0.932252833384;STAT5{A,B}:0.926962429471;FOXP1:0.883205395681;IRF1,2:0.870291893992;RUNX1..3:0.705692490253;HMGA1,2:0.682715959898;PBX1:0.647489002717;DMAP1_NCOR{1,2}_SMARC:0.632064583344;IKZF1:0.631599014993;AIRE:0.616817255545;MYBL2:0.614172396869;POU5F1:0.609373996734;STAT1,3:0.606133062088;NR3C1:0.597864622407;RXRA_VDR{dimer}:0.58254974148;ZNF148:0.579742540044;NKX3-1:0.489026845838;MYB:0.486094373994;PRDM1:0.479080700754;ALX4:0.476705325085;GLI1..3:0.452282571297;NKX6-1,2:0.375469260073;PAX1,9:0.372337719535;TEF:0.369551583548;ZNF238:0.34836101132;NR6A1:0.317364623436;POU1F1:0.307975707524;FOX{I1,J2}:0.265777832188;PAX4:0.248437144722;ARID5B:0.241141206015;FOXP3:0.225930109423;TBX4,5:0.225761653576;PITX1..3:0.220337698119;GZF1:0.21384743017;SPZ1:0.2032142386;HOXA9_MEIS1:0.190971228536;TAL1_TCF{3,4,12}:0.168369743211;PDX1:0.148466440766;SRF:0.145811518426;ZNF384:0.142714308517;EBF1:0.141443058504;NFE2:0.138257105718;CDX1,2,4:0.134882438719;EP300:0.134227639196;EN1,2:0.128064817703;TBP:0.121390788227;FOXO1,3,4:0.111109797766;RBPJ:0.109707585052;TEAD1:0.109377163109;XCPE1{core}:0.102037170766;SOX{8,9,10}:0.0862655270441;TLX1..3_NFIC{dimer}:0.0816974802861;MZF1:0.0640811395985;NFY{A,B,C}:0.061621746301;TOPORS:0.0553509136995;GATA4:0.0533739364058;NFIX:0.0232231949236;NFKB1_REL_RELA:0.0203012969696;RREB1:0.00578265340919;EVI1:-0.00260719345002;FOXL1:-0.00285812832225;ELK1,4_GABP{A,B1}:-0.00432592019038;HOX{A5,B5}:-0.00621483450134;FOX{D1,D2}:-0.0368820581613;TFAP4:-0.0427081012225;TFDP1:-0.049253211227;STAT2,4,6:-0.0581949539978;HLF:-0.0688357847946;SOX5:-0.0738033142238;SOX17:-0.0755376640501;FOXM1:-0.0828430912362;RXR{A,B,G}:-0.0850689979032;MTF1:-0.0943801887756;HSF1,2:-0.170358912861;OCT4_SOX2{dimer}:-0.170989203239;POU2F1..3:-0.182527891085;NKX2-1,4:-0.193540643002;GCM1,2:-0.227019809286;PATZ1:-0.229214613247;YY1:-0.22935332074;ZNF143:-0.229961146248;NFATC1..3:-0.233310040578;MAZ:-0.250822784813;PRRX1,2:-0.259420849767;GTF2I:-0.294468273414;PPARG:-0.294666676653;BACH2:-0.315035892157;NRF1:-0.333186384469;ZIC1..3:-0.334394083357;NANOG{mouse}:-0.337699076379;GFI1B:-0.343964156785;ALX1:-0.34826350061;BREu{core}:-0.355276757721;EGR1..3:-0.366487352413;NKX2-3_NKX2-5:-0.367500274476;KLF4:-0.380057466345;TLX2:-0.391397793904;PAX2:-0.397365396169;HBP1_HMGB_SSRP1_UBTF:-0.41908431019;DBP:-0.420002940525;FOX{F1,F2,J1}:-0.425123479563;NR1H4:-0.44544012362;CUX2:-0.448722252446;ATF4:-0.454918640951;LHX3,4:-0.460051404562;ATF5_CREB3:-0.463988689091;PAX6:-0.467667115413;SOX2:-0.469536342648;SMAD1..7,9:-0.481982982867;HNF1A:-0.486259807372;MEF2{A,B,C,D}:-0.486515999822;GTF2A1,2:-0.519393374131;SP1:-0.521949689506;HAND1,2:-0.529081869371;FOXA2:-0.53512411587;MYFfamily:-0.540390265658;HNF4A_NR2F1,2:-0.54249502634;FOXD3:-0.547641302457;AHR_ARNT_ARNT2:-0.568424350083;ESR1:-0.571380899511;TFAP2{A,C}:-0.591118389407;NKX3-2:-0.592219655814;ZFP161:-0.603809882404;bHLH_family:-0.615961599236;HES1:-0.644040099203;CREB1:-0.656146104642;HMX1:-0.660026480572;POU6F1:-0.665862433396;TGIF1:-0.667680056229;FOS_FOS{B,L1}_JUN{B,D}:-0.67096839025;MED-1{core}:-0.676577077469;LMO2:-0.689668416424;BPTF:-0.703048867751;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.715629881571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.720225770648;HOX{A4,D4}:-0.740241460235;CRX:-0.746051749861;RFX1:-0.748565609937;VSX1,2:-0.750978472267;NHLH1,2:-0.755211376097;UFEwm:-0.756539165132;PAX8:-0.76017118805;TFAP2B:-0.777367790313;ONECUT1,2:-0.786495969514;RFX2..5_RFXANK_RFXAP:-0.793576977746;PAX5:-0.802050076958;MTE{core}:-0.802433238779;T:-0.805230886707;NR5A1,2:-0.843095541489;REST:-0.852041054092;RORA:-0.862092406393;MYOD1:-0.863969622797;NFE2L1:-0.898301474505;ATF2:-0.902574871824;SREBF1,2:-0.906584161442;TFCP2:-0.917638539364;SNAI1..3:-0.941382367273;HIC1:-0.9726556127;ADNP_IRX_SIX_ZHX:-1.00073230439;JUN:-1.00260519501;MAFB:-1.00426919313;TP53:-1.10324258099;CDC5L:-1.11759475013;FOXN1:-1.1219531484;NFIL3:-1.12264255188;FOSL2:-1.15428655526;NANOG:-1.18609898341;ZBTB6:-1.20974964831;HIF1A:-1.21179207746;ZEB1:-1.21534899574;ESRRA:-1.25675785965;LEF1_TCF7_TCF7L1,2:-1.35544581;POU3F1..4:-1.37919956689;AR:-1.56150201997;ATF6:-1.65764543902;FOXQ1:-1.92335058877 | |top_motifs=GATA6:2.44516528449;IRF7:1.86094369719;SPIB:1.65978599157;E2F1..5:1.40949554745;ZNF423:1.37513320101;SPI1:1.12980889226;ELF1,2,4:1.11448195914;ETS1,2:1.04288599343;IKZF2:1.033989162;NKX2-2,8:1.01655813966;ZBTB16:1.00471825663;NFE2L2:0.982905170852;GFI1:0.934358676832;CEBPA,B_DDIT3:0.932252833384;STAT5{A,B}:0.926962429471;FOXP1:0.883205395681;IRF1,2:0.870291893992;RUNX1..3:0.705692490253;HMGA1,2:0.682715959898;PBX1:0.647489002717;DMAP1_NCOR{1,2}_SMARC:0.632064583344;IKZF1:0.631599014993;AIRE:0.616817255545;MYBL2:0.614172396869;POU5F1:0.609373996734;STAT1,3:0.606133062088;NR3C1:0.597864622407;RXRA_VDR{dimer}:0.58254974148;ZNF148:0.579742540044;NKX3-1:0.489026845838;MYB:0.486094373994;PRDM1:0.479080700754;ALX4:0.476705325085;GLI1..3:0.452282571297;NKX6-1,2:0.375469260073;PAX1,9:0.372337719535;TEF:0.369551583548;ZNF238:0.34836101132;NR6A1:0.317364623436;POU1F1:0.307975707524;FOX{I1,J2}:0.265777832188;PAX4:0.248437144722;ARID5B:0.241141206015;FOXP3:0.225930109423;TBX4,5:0.225761653576;PITX1..3:0.220337698119;GZF1:0.21384743017;SPZ1:0.2032142386;HOXA9_MEIS1:0.190971228536;TAL1_TCF{3,4,12}:0.168369743211;PDX1:0.148466440766;SRF:0.145811518426;ZNF384:0.142714308517;EBF1:0.141443058504;NFE2:0.138257105718;CDX1,2,4:0.134882438719;EP300:0.134227639196;EN1,2:0.128064817703;TBP:0.121390788227;FOXO1,3,4:0.111109797766;RBPJ:0.109707585052;TEAD1:0.109377163109;XCPE1{core}:0.102037170766;SOX{8,9,10}:0.0862655270441;TLX1..3_NFIC{dimer}:0.0816974802861;MZF1:0.0640811395985;NFY{A,B,C}:0.061621746301;TOPORS:0.0553509136995;GATA4:0.0533739364058;NFIX:0.0232231949236;NFKB1_REL_RELA:0.0203012969696;RREB1:0.00578265340919;EVI1:-0.00260719345002;FOXL1:-0.00285812832225;ELK1,4_GABP{A,B1}:-0.00432592019038;HOX{A5,B5}:-0.00621483450134;FOX{D1,D2}:-0.0368820581613;TFAP4:-0.0427081012225;TFDP1:-0.049253211227;STAT2,4,6:-0.0581949539978;HLF:-0.0688357847946;SOX5:-0.0738033142238;SOX17:-0.0755376640501;FOXM1:-0.0828430912362;RXR{A,B,G}:-0.0850689979032;MTF1:-0.0943801887756;HSF1,2:-0.170358912861;OCT4_SOX2{dimer}:-0.170989203239;POU2F1..3:-0.182527891085;NKX2-1,4:-0.193540643002;GCM1,2:-0.227019809286;PATZ1:-0.229214613247;YY1:-0.22935332074;ZNF143:-0.229961146248;NFATC1..3:-0.233310040578;MAZ:-0.250822784813;PRRX1,2:-0.259420849767;GTF2I:-0.294468273414;PPARG:-0.294666676653;BACH2:-0.315035892157;NRF1:-0.333186384469;ZIC1..3:-0.334394083357;NANOG{mouse}:-0.337699076379;GFI1B:-0.343964156785;ALX1:-0.34826350061;BREu{core}:-0.355276757721;EGR1..3:-0.366487352413;NKX2-3_NKX2-5:-0.367500274476;KLF4:-0.380057466345;TLX2:-0.391397793904;PAX2:-0.397365396169;HBP1_HMGB_SSRP1_UBTF:-0.41908431019;DBP:-0.420002940525;FOX{F1,F2,J1}:-0.425123479563;NR1H4:-0.44544012362;CUX2:-0.448722252446;ATF4:-0.454918640951;LHX3,4:-0.460051404562;ATF5_CREB3:-0.463988689091;PAX6:-0.467667115413;SOX2:-0.469536342648;SMAD1..7,9:-0.481982982867;HNF1A:-0.486259807372;MEF2{A,B,C,D}:-0.486515999822;GTF2A1,2:-0.519393374131;SP1:-0.521949689506;HAND1,2:-0.529081869371;FOXA2:-0.53512411587;MYFfamily:-0.540390265658;HNF4A_NR2F1,2:-0.54249502634;FOXD3:-0.547641302457;AHR_ARNT_ARNT2:-0.568424350083;ESR1:-0.571380899511;TFAP2{A,C}:-0.591118389407;NKX3-2:-0.592219655814;ZFP161:-0.603809882404;bHLH_family:-0.615961599236;HES1:-0.644040099203;CREB1:-0.656146104642;HMX1:-0.660026480572;POU6F1:-0.665862433396;TGIF1:-0.667680056229;FOS_FOS{B,L1}_JUN{B,D}:-0.67096839025;MED-1{core}:-0.676577077469;LMO2:-0.689668416424;BPTF:-0.703048867751;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.715629881571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.720225770648;HOX{A4,D4}:-0.740241460235;CRX:-0.746051749861;RFX1:-0.748565609937;VSX1,2:-0.750978472267;NHLH1,2:-0.755211376097;UFEwm:-0.756539165132;PAX8:-0.76017118805;TFAP2B:-0.777367790313;ONECUT1,2:-0.786495969514;RFX2..5_RFXANK_RFXAP:-0.793576977746;PAX5:-0.802050076958;MTE{core}:-0.802433238779;T:-0.805230886707;NR5A1,2:-0.843095541489;REST:-0.852041054092;RORA:-0.862092406393;MYOD1:-0.863969622797;NFE2L1:-0.898301474505;ATF2:-0.902574871824;SREBF1,2:-0.906584161442;TFCP2:-0.917638539364;SNAI1..3:-0.941382367273;HIC1:-0.9726556127;ADNP_IRX_SIX_ZHX:-1.00073230439;JUN:-1.00260519501;MAFB:-1.00426919313;TP53:-1.10324258099;CDC5L:-1.11759475013;FOXN1:-1.1219531484;NFIL3:-1.12264255188;FOSL2:-1.15428655526;NANOG:-1.18609898341;ZBTB6:-1.20974964831;HIF1A:-1.21179207746;ZEB1:-1.21534899574;ESRRA:-1.25675785965;LEF1_TCF7_TCF7L1,2:-1.35544581;POU3F1..4:-1.37919956689;AR:-1.56150201997;ATF6:-1.65764543902;FOXQ1:-1.92335058877 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1271-21F2;search_select_hide=table117:1271-21F2 | |||
}} | }} |
Latest revision as of 18:42, 4 June 2020
Name: | spleen, embryo E18 |
---|---|
Species: | Mouse (Mus musculus) |
Library ID: | CNhs11011 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11011
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.0573 |
1001 | 0 |
1002 | 0.254 |
1003 | -0.0842 |
1004 | 0 |
1005 | 0.223 |
1006 | -0.143 |
1007 | -0.0247 |
1008 | 0 |
1009 | 0.0508 |
101 | 0.152 |
1010 | 0 |
1011 | -0.0131 |
1012 | 0.0738 |
1013 | -0.0799 |
1014 | 0.192 |
1015 | -0.00719 |
1016 | -0.00909 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0.0738 |
1022 | -0.246 |
1023 | 0.0738 |
1024 | 0.102 |
1025 | 0.192 |
1026 | 0 |
1027 | 0 |
1028 | 0 |
1029 | 0.142 |
103 | 0.0738 |
1030 | 0.192 |
1031 | 0.201 |
1032 | -0.147 |
1033 | 0.0738 |
1034 | 0.0506 |
1035 | 0 |
1036 | 0.297 |
1037 | 0 |
1038 | -0.102 |
1039 | -0.211 |
104 | 0 |
1040 | 0.176 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11011
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11011
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.217 |
10 | 10 | 0.0466 |
100 | 100 | 0.995 |
101 | 101 | 0.662 |
102 | 102 | 0.412 |
103 | 103 | 0.0439 |
104 | 104 | 0.992 |
105 | 105 | 0.591 |
106 | 106 | 0.0614 |
107 | 107 | 0.0988 |
108 | 108 | 0.599 |
109 | 109 | 0.0566 |
11 | 11 | 0.172 |
110 | 110 | 0.132 |
111 | 111 | 0.307 |
112 | 112 | 0.0275 |
113 | 113 | 0.494 |
114 | 114 | 0.847 |
115 | 115 | 0.488 |
116 | 116 | 0.844 |
117 | 117 | 0.0104 |
118 | 118 | 0.241 |
119 | 119 | 0.509 |
12 | 12 | 0.557 |
120 | 120 | 0.806 |
121 | 121 | 0.547 |
122 | 122 | 0.724 |
123 | 123 | 0.0165 |
124 | 124 | 0.79 |
125 | 125 | 0.0955 |
126 | 126 | 0.232 |
127 | 127 | 0.354 |
128 | 128 | 0.0883 |
129 | 129 | 0.619 |
13 | 13 | 0.001 |
130 | 130 | 0.0594 |
131 | 131 | 0.948 |
132 | 132 | 0.358 |
133 | 133 | 0.144 |
134 | 134 | 0.188 |
135 | 135 | 0.441 |
136 | 136 | 0.9 |
137 | 137 | 0.0233 |
138 | 138 | 0.289 |
139 | 139 | 0.945 |
14 | 14 | 0.865 |
140 | 140 | 0.0684 |
141 | 141 | 0.911 |
142 | 142 | 0.181 |
143 | 143 | 0.255 |
144 | 144 | 0.222 |
145 | 145 | 0.00181 |
146 | 146 | 0.907 |
147 | 147 | 0.605 |
148 | 148 | 0.0296 |
149 | 149 | 0.992 |
15 | 15 | 0.0825 |
150 | 150 | 0.0687 |
151 | 151 | 0.345 |
152 | 152 | 0.701 |
153 | 153 | 0.319 |
154 | 154 | 0.714 |
155 | 155 | 0.184 |
156 | 156 | 2.71243e-20 |
157 | 157 | 0.63 |
158 | 158 | 0.142 |
159 | 159 | 0.186 |
160 | 160 | 0.0616 |
161 | 161 | 0.0798 |
162 | 162 | 0.645 |
163 | 163 | 0.782 |
164 | 164 | 0.00798 |
165 | 165 | 0.124 |
166 | 166 | 0.778 |
167 | 167 | 0.436 |
168 | 168 | 0.848 |
169 | 169 | 0.0277 |
17 | 17 | 0.658 |
18 | 18 | 0.47 |
19 | 19 | 0.19 |
2 | 2 | 0.648 |
20 | 20 | 0.271 |
21 | 21 | 0.183 |
22 | 22 | 0.46 |
23 | 23 | 0.721 |
24 | 24 | 0.175 |
25 | 25 | 0.91 |
26 | 26 | 0.00303 |
27 | 27 | 0.987 |
28 | 28 | 0.681 |
29 | 29 | 0.0526 |
3 | 3 | 0.0215 |
30 | 30 | 0.631 |
31 | 31 | 0.977 |
32 | 32 | 0.961 |
33 | 33 | 0.13 |
34 | 34 | 0.516 |
35 | 35 | 0.697 |
36 | 36 | 0.316 |
37 | 37 | 0.109 |
38 | 38 | 0.757 |
39 | 39 | 0.694 |
4 | 4 | 0.695 |
40 | 40 | 0.25 |
41 | 41 | 0.609 |
42 | 42 | 0.0259 |
43 | 43 | 0.0986 |
44 | 44 | 0.354 |
45 | 45 | 0.903 |
46 | 46 | 0.11 |
47 | 47 | 0.423 |
48 | 48 | 0.304 |
49 | 49 | 0.209 |
5 | 5 | 0.17 |
50 | 50 | 0.223 |
51 | 51 | 0.969 |
52 | 52 | 0.771 |
53 | 53 | 0.666 |
54 | 54 | 0.791 |
55 | 55 | 0.251 |
56 | 56 | 0.56 |
57 | 57 | 0.0995 |
58 | 58 | 0.56 |
59 | 59 | 0.128 |
6 | 6 | 0.725 |
60 | 60 | 0.144 |
61 | 61 | 0.104 |
62 | 62 | 0.287 |
63 | 63 | 0.381 |
64 | 64 | 0.552 |
65 | 65 | 0.928 |
66 | 66 | 0.827 |
67 | 67 | 0.158 |
68 | 68 | 0.625 |
69 | 69 | 0.984 |
7 | 7 | 0.0106 |
70 | 70 | 0.751 |
71 | 71 | 0.00856 |
72 | 72 | 0.31 |
73 | 73 | 0.28 |
74 | 74 | 0.361 |
75 | 75 | 0.176 |
76 | 76 | 0.652 |
77 | 77 | 0.984 |
78 | 78 | 0.0131 |
79 | 79 | 0.443 |
8 | 8 | 0.0884 |
80 | 80 | 0.00974 |
81 | 81 | 0.614 |
82 | 82 | 0.364 |
83 | 83 | 0.917 |
84 | 84 | 0.00255 |
85 | 85 | 0.807 |
86 | 86 | 0.873 |
87 | 87 | 0.0476 |
88 | 88 | 0.808 |
89 | 89 | 0.981 |
9 | 9 | 0.293 |
90 | 90 | 0.17 |
91 | 91 | 0.151 |
92 | 92 | 0.569 |
93 | 93 | 0.411 |
94 | 94 | 0.161 |
95 | 95 | 0.207 |
96 | 96 | 0.416 |
97 | 97 | 0.938 |
98 | 98 | 0.362 |
99 | 99 | 0.414 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11011
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002106 (spleen)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0004177 (hemopoietic organ)
0005057 (immune organ)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002390 (hematopoietic system)
0002417 (abdominal segment of trunk)
0002193 (hemolymphoid system)
0000916 (abdomen)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000302 (mouse embryonic day 18 sample)
0011517 (mouse spleen-, embryo E18 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)