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{{Coexpression_clusters
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development!1.38622787099341e-05!121340;3381;1300;860;249$GO:0001503!ossification!1.38622787099341e-05!121340;3381;860;249$GO:0031214!biomineral formation!1.38622787099341e-05!121340;3381;860;249$GO:0046849!bone remodeling!1.47690842449678e-05!121340;3381;860;249$GO:0048771!tissue remodeling!1.69478882821983e-05!121340;3381;860;249$GO:0009888!tissue development!0.000973078205899421!121340;3381;860;249$GO:0001649!osteoblast differentiation!0.00331469258547911!121340;860$GO:0048513!organ development!0.0109287657732847!121340;3381;1300;860;249$GO:0007275!multicellular organismal development!0.0350956604091168!121340;3381;1300;4188;860;249$GO:0032502!developmental process!0.0372980257525899!121340;3381;1300;4188;860;864;249$GO:0048731!system development!0.0372980257525899!121340;3381;1300;860;249$GO:0004035!alkaline phosphatase 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157,0.015773,1.90724e-11,0.790035,1.03134e-09,0.101272,0.845562,0.135705,0.580677,0.580298,2.0694,0.0765432,2.51681,1.59961,0.0173298,9.64327e-17,0.00752736,0.00111962,0.0671222,0.27126,0.074644,0.172742,1.9885,2.21478,0.0136042,1.53034,0.035282,0.0947362,0.0706492,0.0211154,0.748255,0.146053,0.0305385,0.519606,0.190479,0.000395926,0.00153739,0.166921,0.0108556,0.000111507,0.0815931,0.193377,0.181771,0.847847,0.213066,1.29835,1.0627e-11,0.378924,0.0199184,0.250758,0.475122,0.216201,0.366378,0.545403,0.325802,0.384828,0.276998,0.0225231,0.309396,0.798268,0.343318,0.211469,0.598,0.263981,1.4473,0.00517339,0.187463,1.83773,0.856176,0.630308,0.307424,0.760537,0.281792,0.199615,0.0492801,0.0331682,0.0897704,1.23807,1.36484,0.00198536,0.0902464,0,0.0139861,0.112767,0.127064,0.421448,1.91035,0.183861,1.09763,6.99415e-05,0.432695,0.057805,0.816679,0.0627042,0.220518,0.853138,0.0922219,0.034683,0.000217622|tfbs_overrepresentation_jaspar=MA0003.1;1.17021e-13,MA0004.1;0.0265036,MA0006.1;0.00145686,MA0007.1;0.156213,MA0009.1;1.03136,MA0014.1;0,MA0017.1;0.00258317,MA0019.1;0.807764,MA0024.1;0.0594269,MA0025.1;0.118087,MA0027.1;1.07684,MA0028.1;0.000141644,MA0029.1;2.02739,MA0030.1;2.79663,MA0031.1;1.17789,MA0038.1;1.42377,MA0040.1;1.67636,MA0041.1;1.15682,MA0042.1;2.27556,MA0043.1;0.275272,MA0046.1;0.691311,MA0048.1;0.00143807,MA0050.1;0.0693564,MA0051.1;0.19388,MA0052.1;9.051,MA0055.1;0.00017551,MA0056.1;0,MA0057.1;0.000281237,MA0058.1;0.00245266,MA0059.1;0.0114476,MA0060.1;0.00679952,MA0061.1;0.0291413,MA0063.1;0,MA0066.1;0.203873,MA0067.1;0.276011,MA0068.1;0.102606,MA0069.1;0.252141,MA0070.1;0.0391334,MA0071.1;0.549771,MA0072.1;0.630474,MA0073.1;6.56336e-10,MA0074.1;0.409083,MA0076.1;6.1867e-06,MA0077.1;0.607163,MA0078.1;0.861791,MA0081.1;0.0384252,MA0083.1;1.42311,MA0084.1;0.967398,MA0087.1;0.39814,MA0088.1;2.67142e-05,MA0089.1;0,MA0090.1;2.57906,MA0091.1;0.295171,MA0092.1;0.584957,MA0093.1;0.00363145,MA0095.1;0,MA0098.1;0,MA0100.1;0.00213592,MA0101.1;0.0992001,MA0103.1;0.415008,MA0105.1;0.037018,MA0106.1;0.120105,MA0107.1;0.0472152,MA0108.2;0.885756,MA0109.1;0,MA0111.1;0.765346,MA0113.1;0.233484,MA0114.1;0.00144712,MA0115.1;0.0549558,MA0116.1;0.106328,MA0117.1;0.33712,MA0119.1;1.19574,MA0122.1;0.383806,MA0124.1;0.6748,MA0125.1;2.53236,MA0130.1;0,MA0131.1;0.000341211,MA0132.1;0,MA0133.1;0,MA0135.1;0.324611,MA0136.1;0.0794945,MA0139.1;0.000348377,MA0140.1;0.0394752,MA0141.1;0.266285,MA0142.1;0.368975,MA0143.1;0.674795,MA0144.1;0.0554471,MA0145.1;0.0270305,MA0146.1;1.0225e-07,MA0147.1;0.0153237,MA0148.1;1.68712,MA0149.1;0.000483981,MA0062.2;3.27326e-07,MA0035.2;0.0729504,MA0039.2;1.2218e-13,MA0138.2;0.062521,MA0002.2;10.0629,MA0137.2;0.0638289,MA0104.2;0.00010308,MA0047.2;1.98692,MA0112.2;0.0379013,MA0065.2;0.0134767,MA0150.1;0.152109,MA0151.1;0,MA0152.1;0.734576,MA0153.1;0.0962703,MA0154.1;0.240568,MA0155.1;1.09598,MA0156.1;0.00359394,MA0157.1;0.862567,MA0158.1;0,MA0159.1;0.268664,MA0160.1;0.226637,MA0161.1;0,MA0162.1;1.02701e-14,MA0163.1;0.0187146,MA0164.1;0.0454949,MA0080.2;0.00738659,MA0018.2;0.604421,MA0099.2;1.89894,MA0079.2;0,MA0102.2;0.551775,MA0258.1;0.755415,MA0259.1;0.003635,MA0442.1;0}}
|full_id=C77_Saos2_osteosarcoma_Neutrophils_Natural_Chondrocyte_Basophils_CD8
|gostat_on_coexpression_clusters=GO:0001501!skeletal development!1.38622787099341e-05!121340;3381;1300;860;249$GO:0001503!ossification!1.38622787099341e-05!121340;3381;860;249$GO:0031214!biomineral formation!1.38622787099341e-05!121340;3381;860;249$GO:0046849!bone remodeling!1.47690842449678e-05!121340;3381;860;249$GO:0048771!tissue remodeling!1.69478882821983e-05!121340;3381;860;249$GO:0009888!tissue development!0.000973078205899421!121340;3381;860;249$GO:0001649!osteoblast differentiation!0.00331469258547911!121340;860$GO:0048513!organ development!0.0109287657732847!121340;3381;1300;860;249$GO:0007275!multicellular organismal development!0.0350956604091168!121340;3381;1300;4188;860;249$GO:0032502!developmental process!0.0372980257525899!121340;3381;1300;4188;860;864;249$GO:0048731!system development!0.0372980257525899!121340;3381;1300;860;249$GO:0004035!alkaline phosphatase activity!0.0489916179153388!249
|id=C77
|ontology_enrichment_celltype=CL:0000625!1.04e-07!11
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007023!4.21e-24!115;UBERON:0001017!3.01e-11!82;UBERON:0005743!7.78e-11!86;UBERON:0000073!6.14e-10!94;UBERON:0001016!6.14e-10!94;UBERON:0000955!2.52e-08!69;UBERON:0006238!2.52e-08!69;UBERON:0001049!1.05e-07!57;UBERON:0005068!1.05e-07!57;UBERON:0006241!1.05e-07!57;UBERON:0007135!1.05e-07!57;UBERON:0002616!3.17e-07!59;UBERON:0000479!4.96e-07!787;UBERON:0000178!8.12e-07!15;UBERON:0000179!8.12e-07!15;UBERON:0000463!8.12e-07!15
|pathway_enrichment=1.1538319656142e-07;7.3037563423379e-05;4;65;Endochondral Ossification (Wikipathways):WP474
}}

Latest revision as of 10:25, 17 September 2013


Full id: C77_Saos2_osteosarcoma_Neutrophils_Natural_Chondrocyte_Basophils_CD8



Phase1 CAGE Peaks

Hg19::chr10:54411290..54411295,-p@chr10:54411290..54411295
-
Hg19::chr11:124478164..124478168,-p@chr11:124478164..124478168
-
Hg19::chr11:124479851..124479862,-p@chr11:124479851..124479862
-
Hg19::chr11:124480065..124480072,-p@chr11:124480065..124480072
-
Hg19::chr11:124480073..124480086,-p@chr11:124480073..124480086
-
Hg19::chr11:124481316..124481334,+p1@PANX3
Hg19::chr11:124481361..124481366,+p2@PANX3
Hg19::chr11:124489771..124489792,+p@chr11:124489771..124489792
+
Hg19::chr11:126573090..126573097,+p@chr11:126573090..126573097
+
Hg19::chr11:126573105..126573118,+p@chr11:126573105..126573118
+
Hg19::chr11:131213225..131213274,+p@chr11:131213225..131213274
+
Hg19::chr11:299519..299533,-p1@IFITM5
Hg19::chr11:30911556..30911574,+p@chr11:30911556..30911574
+
Hg19::chr11:46326686..46326700,+p@chr11:46326686..46326700
+
Hg19::chr11:81619863..81619881,+p@chr11:81619863..81619881
+
Hg19::chr11:85416537..85416545,-p22@SYTL2
Hg19::chr11:85416548..85416560,-p18@SYTL2
Hg19::chr11:92613787..92613796,+p@chr11:92613787..92613796
+
Hg19::chr11:92613813..92613863,+p@chr11:92613813..92613863
+
Hg19::chr11:93129900..93129911,+p@chr11:93129900..93129911
+
Hg19::chr12:49366362..49366379,-p@chr12:49366362..49366379
-
Hg19::chr12:49366390..49366401,-p@chr12:49366390..49366401
-
Hg19::chr12:49366435..49366452,-p@chr12:49366435..49366452
-
Hg19::chr12:53721918..53721923,-p@chr12:53721918..53721923
-
Hg19::chr12:53730147..53730177,-p2@SP7
Hg19::chr12:53730178..53730189,-p3@SP7
Hg19::chr12:67914694..67914707,+p@chr12:67914694..67914707
+
Hg19::chr13:42264610..42264621,-p@chr13:42264610..42264621
-
Hg19::chr13:42264908..42264914,-p@chr13:42264908..42264914
-
Hg19::chr13:42267088..42267096,-p@chr13:42267088..42267096
-
Hg19::chr13:42269057..42269068,-p3@AK130122
Hg19::chr13:42269075..42269089,-p1@AK130122
Hg19::chr13:42269101..42269110,-p4@AK130122
Hg19::chr13:42269136..42269148,-p2@AK130122
Hg19::chr14:28314513..28314526,-p1@ENST00000555797
Hg19::chr15:30360639..30360648,-p@chr15:30360639..30360648
-
Hg19::chr15:30360803..30360815,-p@chr15:30360803..30360815
-
Hg19::chr16:53706815..53706819,-p@chr16:53706815..53706819
-
Hg19::chr16:53707116..53707125,-p@chr16:53707116..53707125
-
Hg19::chr16:57147279..57147287,+p3@AF542551
p3@BC010627
Hg19::chr16:70731167..70731181,-p@chr16:70731167..70731181
-
Hg19::chr16:70731292..70731335,-p@chr16:70731292..70731335
-
Hg19::chr17:1932231..1932269,+p@chr17:1932231..1932269
+
Hg19::chr17:4705621..4705645,-p@chr17:4705621..4705645
-
Hg19::chr17:79965744..79965750,+p11@ASPSCR1
Hg19::chr17:79965883..79965891,+p@chr17:79965883..79965891
+
Hg19::chr17:79965892..79965924,+p@chr17:79965892..79965924
+
Hg19::chr17:79965930..79965938,+p@chr17:79965930..79965938
+
Hg19::chr17:79965942..79965947,+p@chr17:79965942..79965947
+
Hg19::chr17:79966486..79966493,+p@chr17:79966486..79966493
+
Hg19::chr17:79966585..79966594,+p@chr17:79966585..79966594
+
Hg19::chr17:79966610..79966637,+p@chr17:79966610..79966637
+
Hg19::chr17:79966642..79966666,+p@chr17:79966642..79966666
+
Hg19::chr17:79966939..79966954,+p@chr17:79966939..79966954
+
Hg19::chr17:79967254..79967267,+p@chr17:79967254..79967267
+
Hg19::chr17:79968448..79968454,+p@chr17:79968448..79968454
+
Hg19::chr17:79968458..79968470,+p@chr17:79968458..79968470
+
Hg19::chr17:79968480..79968490,+p@chr17:79968480..79968490
+
Hg19::chr17:79968522..79968530,+p@chr17:79968522..79968530
+
Hg19::chr17:79968630..79968635,+p@chr17:79968630..79968635
+
Hg19::chr17:79968655..79968672,+p@chr17:79968655..79968672
+
Hg19::chr17:79969860..79969871,+p@chr17:79969860..79969871
+
Hg19::chr18:66061928..66061937,-p@chr18:66061928..66061937
-
Hg19::chr18:66061970..66061982,-p@chr18:66061970..66061982
-
Hg19::chr19:28145289..28145296,-p@chr19:28145289..28145296
-
Hg19::chr19:28163893..28163904,+p@chr19:28163893..28163904
+
Hg19::chr19:28164112..28164118,+p@chr19:28164112..28164118
+
Hg19::chr19:28185172..28185189,-p@chr19:28185172..28185189
-
Hg19::chr19:28198009..28198037,-p@chr19:28198009..28198037
-
Hg19::chr19:28198123..28198149,+p@chr19:28198123..28198149
+
Hg19::chr19:28198179..28198195,+p@chr19:28198179..28198195
+
Hg19::chr19:28198206..28198222,+p@chr19:28198206..28198222
+
Hg19::chr19:28202503..28202508,-p@chr19:28202503..28202508
-
Hg19::chr19:28202519..28202528,-p@chr19:28202519..28202528
-
Hg19::chr19:28236792..28236797,+p@chr19:28236792..28236797
+
Hg19::chr19:28237057..28237073,+p@chr19:28237057..28237073
+
Hg19::chr19:28242224..28242230,+p@chr19:28242224..28242230
+
Hg19::chr19:28248054..28248062,+p@chr19:28248054..28248062
+
Hg19::chr19:28260754..28260759,+p@chr19:28260754..28260759
+
Hg19::chr19:28262882..28262886,+p@chr19:28262882..28262886
+
Hg19::chr19:28269266..28269269,+p@chr19:28269266..28269269
+
Hg19::chr19:28271083..28271089,+p@chr19:28271083..28271089
+
Hg19::chr19:28271937..28271942,+p@chr19:28271937..28271942
+
Hg19::chr19:28272010..28272016,+p@chr19:28272010..28272016
+
Hg19::chr19:3314450..3314461,+p@chr19:3314450..3314461
+
Hg19::chr19:45821290..45821301,-p@chr19:45821290..45821301
-
Hg19::chr19:45821324..45821328,-p@chr19:45821324..45821328
-
Hg19::chr1:105493789..105493826,-p@chr1:105493789..105493826
-
Hg19::chr1:112316957..112316974,+p@chr1:112316957..112316974
+
Hg19::chr1:16343894..16343914,-p@chr1:16343894..16343914
-
Hg19::chr1:16343915..16343936,-p@chr1:16343915..16343936
-
Hg19::chr1:16343937..16343946,-p@chr1:16343937..16343946
-
Hg19::chr1:199050050..199050059,-p@chr1:199050050..199050059
-
Hg19::chr1:199050926..199050944,-p@chr1:199050926..199050944
-
Hg19::chr1:21835908..21835926,+p1@ALPL
Hg19::chr1:21880493..21880518,+p4@ALPL
Hg19::chr1:21880519..21880528,+p11@ALPL
Hg19::chr1:21890586..21890595,+p9@ALPL
Hg19::chr1:21894015..21894027,+p@chr1:21894015..21894027
+
Hg19::chr1:21894055..21894060,+p@chr1:21894055..21894060
+
Hg19::chr1:21904551..21904569,-p@chr1:21904551..21904569
-
Hg19::chr1:21912937..21912944,+p2@ENST00000457706
Hg19::chr1:21912975..21912983,+p1@ENST00000457706
Hg19::chr1:25291275..25291301,-p12@RUNX3
Hg19::chr1:39992756..39992784,-p@chr1:39992756..39992784
-
Hg19::chr1:41868813..41868817,-p@chr1:41868813..41868817
-
Hg19::chr1:52116793..52116805,+p@chr1:52116793..52116805
+
Hg19::chr1:62392583..62392613,+p@chr1:62392583..62392613
+
Hg19::chr1:62392630..62392651,+p@chr1:62392630..62392651
+
Hg19::chr1:77864109..77864116,+p@chr1:77864109..77864116
+
Hg19::chr20:17519265..17519274,-p@chr20:17519265..17519274
-
Hg19::chr20:17519297..17519304,-p@chr20:17519297..17519304
-
Hg19::chr20:4444563..4444585,+p@chr20:4444563..4444585
+
Hg19::chr20:4444611..4444628,+p@chr20:4444611..4444628
+
Hg19::chr20:4451158..4451164,-p@chr20:4451158..4451164
-
Hg19::chr20:58676515..58676524,+p@chr20:58676515..58676524
+
Hg19::chr20:58676530..58676545,+p@chr20:58676530..58676545
+
Hg19::chr2:121684363..121684405,+p@chr2:121684363..121684405
+
Hg19::chr2:128896491..128896497,+p@chr2:128896491..128896497
+
Hg19::chr2:128896543..128896553,+p@chr2:128896543..128896553
+
Hg19::chr2:190240072..190240096,+p@chr2:190240072..190240096
+
Hg19::chr2:190240113..190240131,+p@chr2:190240113..190240131
+
Hg19::chr2:190240185..190240190,+p@chr2:190240185..190240190
+
Hg19::chr2:190245902..190245918,-p@chr2:190245902..190245918
-
Hg19::chr2:200470609..200470616,-p@chr2:200470609..200470616
-
Hg19::chr2:200677330..200677348,+p@chr2:200677330..200677348
+
Hg19::chr2:37593641..37593648,+p@chr2:37593641..37593648
+
Hg19::chr2:37593656..37593667,+p@chr2:37593656..37593667
+
Hg19::chr2:38466754..38466766,-p2@ENST00000450854
Hg19::chr2:38466814..38466823,-p8@ENST00000450854
Hg19::chr2:54252811..54252825,-p@chr2:54252811..54252825
-
Hg19::chr2:71791188..71791195,+p@chr2:71791188..71791195
+
Hg19::chr2:8960249..8960254,-p@chr2:8960249..8960254
-
Hg19::chr3:141678730..141678768,-p@chr3:141678730..141678768
-
Hg19::chr3:149824497..149824506,-p@chr3:149824497..149824506
-
Hg19::chr3:149824547..149824554,-p@chr3:149824547..149824554
-
Hg19::chr3:180588303..180588310,-p1@CCDC39
Hg19::chr3:41723047..41723059,-p5@ULK4
Hg19::chr3:55016696..55016715,-p@chr3:55016696..55016715
-
Hg19::chr3:55016721..55016732,-p@chr3:55016721..55016732
-
Hg19::chr3:58021410..58021424,+p@chr3:58021410..58021424
+
Hg19::chr4:123392011..123392012,+p@chr4:123392011..123392012
+
Hg19::chr4:145430542..145430557,-p@chr4:145430542..145430557
-
Hg19::chr4:15964182..15964193,+p2@CU693033
Hg19::chr4:15964231..15964260,+p1@CU693033
Hg19::chr4:15964293..15964341,+p4@CU693033
Hg19::chr4:15964788..15964805,-p1@FGFBP2
Hg19::chr4:15964806..15964817,-p3@FGFBP2
Hg19::chr4:15964830..15964851,-p2@FGFBP2
Hg19::chr4:16020432..16020477,-p@chr4:16020432..16020477
-
Hg19::chr4:16020500..16020547,-p@chr4:16020500..16020547
-
Hg19::chr4:16027038..16027047,-p@chr4:16027038..16027047
-
Hg19::chr4:188536760..188536764,-p@chr4:188536760..188536764
-
Hg19::chr4:188536783..188536788,-p@chr4:188536783..188536788
-
Hg19::chr4:188536806..188536817,-p@chr4:188536806..188536817
-
Hg19::chr4:188536873..188536891,-p@chr4:188536873..188536891
-
Hg19::chr4:189321717..189321731,+p2@ENST00000512839
p2@ENST00000513313
p2@uc003izo.1
Hg19::chr4:189321732..189321736,+p7@ENST00000512839
p7@ENST00000513313
p7@uc003izo.1
Hg19::chr4:189321921..189321935,+p4@ENST00000512839
p4@ENST00000513313
p4@uc003izo.1
Hg19::chr4:189321956..189321963,+p6@ENST00000512839
p6@ENST00000513313
p6@uc003izo.1
Hg19::chr4:35027177..35027183,-p@chr4:35027177..35027183
-
Hg19::chr4:41614752..41614765,+p27@LIMCH1
Hg19::chr4:57931672..57931693,-p4@ENST00000512512
Hg19::chr4:66535152..66535180,+p3@LOC100144602
Hg19::chr4:77506733..77506743,+p@chr4:77506733..77506743
+
Hg19::chr4:88653561..88653570,-p1@ENST00000506480
Hg19::chr4:88654323..88654347,-p@chr4:88654323..88654347
-
Hg19::chr4:88666648..88666655,-p@chr4:88666648..88666655
-
Hg19::chr4:88720698..88720722,+p1@IBSP
Hg19::chr4:88723803..88723839,+p@chr4:88723803..88723839
+
Hg19::chr4:88727274..88727278,+p@chr4:88727274..88727278
+
Hg19::chr4:88731810..88731821,+p@chr4:88731810..88731821
+
Hg19::chr4:88731854..88731869,+p@chr4:88731854..88731869
+
Hg19::chr4:88731871..88731877,+p@chr4:88731871..88731877
+
Hg19::chr4:88731888..88731889,+p@chr4:88731888..88731889
+
Hg19::chr4:88732513..88732528,+p@chr4:88732513..88732528
+
Hg19::chr4:88732806..88732816,+p@chr4:88732806..88732816
+
Hg19::chr5:82307578..82307601,-p@chr5:82307578..82307601
-
Hg19::chr5:86679358..86679365,+p@chr5:86679358..86679365
+
Hg19::chr6:113772872..113772888,-p@chr6:113772872..113772888
-
Hg19::chr6:116447293..116447325,-p1@COL10A1
Hg19::chr6:143447228..143447237,+p16@AIG1
Hg19::chr6:143447268..143447286,+p4@AIG1
Hg19::chr6:143447290..143447299,+p17@AIG1
Hg19::chr6:143447300..143447316,+p8@AIG1
Hg19::chr6:143447322..143447336,+p11@AIG1
Hg19::chr6:155427848..155427862,+p@chr6:155427848..155427862
+
Hg19::chr6:161454830..161454839,+p@chr6:161454830..161454839
+
Hg19::chr6:23228832..23228835,+p@chr6:23228832..23228835
+
Hg19::chr6:23228836..23228864,+p@chr6:23228836..23228864
+
Hg19::chr6:41613840..41613845,+p18@MDFI
Hg19::chr6:45295874..45295877,+p47@RUNX2
Hg19::chr6:45322890..45322895,+p@chr6:45322890..45322895
+
Hg19::chr6:45382521..45382525,+p@chr6:45382521..45382525
+
Hg19::chr6:81430111..81430117,+p@chr6:81430111..81430117
+
Hg19::chr6:81435467..81435479,+p@chr6:81435467..81435479
+
Hg19::chr7:131582395..131582410,+p1@ENST00000452219
Hg19::chr7:131583321..131583328,-p@chr7:131583321..131583328
-
Hg19::chr7:25370183..25370193,+p@chr7:25370183..25370193
+
Hg19::chr7:48078148..48078160,-p@chr7:48078148..48078160
-
Hg19::chr7:78161666..78161675,-p@chr7:78161666..78161675
-
Hg19::chr7:80000207..80000217,+p@chr7:80000207..80000217
+
Hg19::chr8:104215580..104215589,-p1@ENST00000523915
Hg19::chr8:134020867..134020882,-p@chr8:134020867..134020882
-
Hg19::chr8:134020899..134020917,-p@chr8:134020899..134020917
-
Hg19::chr8:134021151..134021176,-p@chr8:134021151..134021176
-
Hg19::chr8:134021602..134021610,+p@chr8:134021602..134021610
+
Hg19::chr8:134029743..134029754,+p34@TG
Hg19::chr8:134029937..134029944,+p22@TG
Hg19::chr8:134104319..134104347,-p@chr8:134104319..134104347
-
Hg19::chr8:134128500..134128506,+p@chr8:134128500..134128506
+
Hg19::chr8:60090206..60090207,+p@chr8:60090206..60090207
+
Hg19::chr8:64349734..64349746,+p@chr8:64349734..64349746
+
Hg19::chr8:72504214..72504256,-p1@ENST00000518177
Hg19::chr8:97570368..97570378,+p@chr8:97570368..97570378
+
Hg19::chr9:118246509..118246532,+p@chr9:118246509..118246532
+
Hg19::chr9:29940198..29940204,+p@chr9:29940198..29940204
+
Hg19::chr9:29941904..29941908,+p@chr9:29941904..29941908
+
Hg19::chr9:29942046..29942058,+p@chr9:29942046..29942058
+
Hg19::chr9:29942099..29942136,+p@chr9:29942099..29942136
+
Hg19::chr9:29942164..29942166,+p@chr9:29942164..29942166
+
Hg19::chr9:29963867..29963872,+p@chr9:29963867..29963872
+
Hg19::chr9:72436290..72436302,-p@chr9:72436290..72436302
-
Hg19::chr9:72436304..72436310,-p@chr9:72436304..72436310
-
Hg19::chr9:72436332..72436343,-p@chr9:72436332..72436343
-
Hg19::chr9:97952157..97952178,-p1@AF086119
Hg19::chr9:97968566..97968576,-p@chr9:97968566..97968576
-
Hg19::chrX:57619083..57619113,+p1@ZXDB
Hg19::chrX:57930371..57930380,-p@chrX:57930371..57930380
-
Hg19::chrX:57933412..57933415,-p@chrX:57933412..57933415
-
Hg19::chrX:57934585..57934628,-p@chrX:57934585..57934628
-
Hg19::chrX:57936237..57936264,-p1@ZXDA
Hg19::chrX:58052946..58052954,+p@chrX:58052946..58052954
+
Hg19::chrX:58168137..58168144,-p@chrX:58168137..58168144
-
Hg19::chrX:58169111..58169120,-p@chrX:58169111..58169120
-
Hg19::chrX:58230080..58230084,-p@chrX:58230080..58230084
-
Hg19::chrX:82002721..82002725,-p@chrX:82002721..82002725
-
Hg19::chrX:95277870..95277872,+p@chrX:95277870..95277872
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
1.1538319656142e-077.3037563423379e-05465Endochondral Ossification (Wikipathways):WP474



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0001501skeletal development1.38622787099341e-05
GO:0001503ossification1.38622787099341e-05
GO:0031214biomineral formation1.38622787099341e-05
GO:0046849bone remodeling1.47690842449678e-05
GO:0048771tissue remodeling1.69478882821983e-05
GO:0009888tissue development0.000973078205899421
GO:0001649osteoblast differentiation0.00331469258547911
GO:0048513organ development0.0109287657732847
GO:0007275multicellular organismal development0.0350956604091168
GO:0032502developmental process0.0372980257525899
GO:0048731system development0.0372980257525899
GO:0004035alkaline phosphatase activity0.0489916179153388



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br><br>

Cell Type
Ontology termp-valuen
osteoblast6.80e-3711
osteoprogenitor cell6.80e-3711
mesenchyme condensation cell6.80e-3711
single fate stem cell5.71e-2120


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.11.17021e-13
MA0004.10.0265036
MA0006.10.00145686
MA0007.10.156213
MA0009.11.03136
MA0014.10
MA0017.10.00258317
MA0019.10.807764
MA0024.10.0594269
MA0025.10.118087
MA0027.11.07684
MA0028.10.000141644
MA0029.12.02739
MA0030.12.79663
MA0031.11.17789
MA0038.11.42377
MA0040.11.67636
MA0041.11.15682
MA0042.12.27556
MA0043.10.275272
MA0046.10.691311
MA0048.10.00143807
MA0050.10.0693564
MA0051.10.19388
MA0052.19.051
MA0055.10.00017551
MA0056.10
MA0057.10.000281237
MA0058.10.00245266
MA0059.10.0114476
MA0060.10.00679952
MA0061.10.0291413
MA0063.10
MA0066.10.203873
MA0067.10.276011
MA0068.10.102606
MA0069.10.252141
MA0070.10.0391334
MA0071.10.549771
MA0072.10.630474
MA0073.16.56336e-10
MA0074.10.409083
MA0076.16.1867e-06
MA0077.10.607163
MA0078.10.861791
MA0081.10.0384252
MA0083.11.42311
MA0084.10.967398
MA0087.10.39814
MA0088.12.67142e-05
MA0089.10
MA0090.12.57906
MA0091.10.295171
MA0092.10.584957
MA0093.10.00363145
MA0095.10
MA0098.10
MA0100.10.00213592
MA0101.10.0992001
MA0103.10.415008
MA0105.10.037018
MA0106.10.120105
MA0107.10.0472152
MA0108.20.885756
MA0109.10
MA0111.10.765346
MA0113.10.233484
MA0114.10.00144712
MA0115.10.0549558
MA0116.10.106328
MA0117.10.33712
MA0119.11.19574
MA0122.10.383806
MA0124.10.6748
MA0125.12.53236
MA0130.10
MA0131.10.000341211
MA0132.10
MA0133.10
MA0135.10.324611
MA0136.10.0794945
MA0139.10.000348377
MA0140.10.0394752
MA0141.10.266285
MA0142.10.368975
MA0143.10.674795
MA0144.10.0554471
MA0145.10.0270305
MA0146.11.0225e-07
MA0147.10.0153237
MA0148.11.68712
MA0149.10.000483981
MA0062.23.27326e-07
MA0035.20.0729504
MA0039.21.2218e-13
MA0138.20.062521
MA0002.210.0629
MA0137.20.0638289
MA0104.20.00010308
MA0047.21.98692
MA0112.20.0379013
MA0065.20.0134767
MA0150.10.152109
MA0151.10
MA0152.10.734576
MA0153.10.0962703
MA0154.10.240568
MA0155.11.09598
MA0156.10.00359394
MA0157.10.862567
MA0158.10
MA0159.10.268664
MA0160.10.226637
MA0161.10
MA0162.11.02701e-14
MA0163.10.0187146
MA0164.10.0454949
MA0080.20.00738659
MA0018.20.604421
MA0099.21.89894
MA0079.20
MA0102.20.551775
MA0258.10.755415
MA0259.10.003635
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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