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| <html><link rel="stylesheet" href="/resource_browser/nwfiles/f5-style.css" /></html> | | <html><link rel="stylesheet" href="/resource_browser/nwfiles/css/f5-style.css" /></html> |
| <html> | | <html> |
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| <div id="f5_cytoscapeweb"> | | <div id="f5_cytoscapeweb"> |
| <div id="panel1"> | | <div id="panel1"> |
| | <h2 id="cyto_title"></h2> |
| <div id="cytoscapeweb"></div> | | <div id="cytoscapeweb"></div> |
| <div id="legend"><b>LEGEND:</b> <span class="tf">TF <img src="/resource_browser/nwfiles/img/tf.png" /></span>, <span class="motif">MOTIF <img src="/resource_browser/nwfiles/img/motif.png" /></span>, | | <div id="legend"> |
| <br /><span class="tf">MOTIF->TF <img src="/resource_browser/nwfiles/img/motif-tf.png" /></span>, <span class="motif">TF->MOTIF <img src="/resource_browser/nwfiles/img/tf-motif.png" /></div>
| | |
| | <div id="node_legend"> |
| | <table> |
| | <tr> |
| | <td>SAMPLE</td> |
| | <td><svg width="20" height="24"> |
| | <circle r="10" cx="10" cy="14" class="tf"/> |
| | </svg> |
| | TF</td> |
| | <td><svg width="20" height="24"> |
| | <rect width="20" height="20" x="0" y="4" class="motif"/> |
| | </svg> |
| | MOTIF</td> |
| | </tr> |
| | </table> |
| | </div> |
| | <div id="edge_legend"> |
| | Promoter <img src="/resource_browser/nwfiles/img/motif-tf.png" /> |
| | <br />TF-MOTIF Binding <img src="/resource_browser/nwfiles/img/tf-motif.png" /> |
| | </div> |
| | </div> |
| </div> | | </div> |
| <div id="panel2"> | | <div id="panel2"> |
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| <li><a href="#properties_panel_edges">Edges</a></li> | | <li><a href="#properties_panel_edges">Edges</a></li> |
| <li><a href="#compare_panel">Compare</a></li> | | <li><a href="#compare_panel">Compare</a></li> |
| | <li><a href="#help_panel">Help</a></li> |
| </ul> | | </ul> |
| <div id="style_panel"> | | <div id="style_panel"> |
| <label class="style">Layout:</label> | | <label class="style">Layout:</label> |
| <select id="cyto_layout" class="ui-button ui-widget ui-state-default ui-corner-all ui-button-text-only"> | | <select id="cyto_layout" style="float: left;" class="ui-button ui-widget ui-state-default ui-corner-all ui-button-text-only"> |
| <!-- option value="Preset">Preset</option --> | | <!-- option value="Preset">Preset</option --> |
| <option value="ForceDirected" selected>Force Directed</option> | | <option value="ForceDirected" selected>Force Directed</option> |
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| <label class="filter">Show edges:</label> | | <label class="filter">Show edges:</label> |
| <div id="edge_type_filter"> | | <div id="edge_type_filter"> |
| <input type="checkbox" id="cyto_edges_binds_to" value="binds_to" checked>TF->MOTIF</input> | | <input type="checkbox" id="cyto_edges_binds_to" value="binds_to" checked>TF-MOTIF Binding</input> |
| <br /><input type="checkbox" id="cyto_edges_promotes" value="promotes" checked>Promoters</input> | | <br /><input type="checkbox" id="cyto_edges_promotes" value="promotes" checked>Promoters</input> |
| </div> | | </div> |
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| </div> | | </div> |
| <div id="compare_panel"> | | <div id="compare_panel"> |
| <br />A = <select id="sample_a"> | | <div id="load"> |
| <option value="CNhs10608.10000-101A1">CNhs10608.10000-101A1</option> | | <input type="text" class="left" id="samples" name="blah" title="Search" /> |
| <option value="CNhs10610.10002-101A5">CNhs10610.10002-101A5</option>
| | <button id="cyto_load" class="right">Load</button> |
| <option value="CNhs10612.10007-101B4">CNhs10612.10007-101B4</option>
| | </div> |
| <option value="CNhs10615.10010-101C1">CNhs10615.10010-101C1</option>
| |
| <option value="CNhs10616.10011-101C2">CNhs10616.10011-101C2</option>
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| <option value="CNhs10617.10012-101C3">CNhs10617.10012-101C3</option>
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| <option value="CNhs10618.10013-101C4">CNhs10618.10013-101C4</option>
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| <option value="CNhs10619.10014-101C5">CNhs10619.10014-101C5</option>
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| <option value="CNhs10620.10015-101C6">CNhs10620.10015-101C6</option>
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| <option value="CNhs10621.10016-101C7">CNhs10621.10016-101C7</option>
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| <option value="CNhs10622.10017-101C8">CNhs10622.10017-101C8</option>
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| <option value="CNhs10624.10018-101C9">CNhs10624.10018-101C9</option>
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| <option value="CNhs10625.10019-101D1">CNhs10625.10019-101D1</option>
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| <option value="CNhs10626.10020-101D2">CNhs10626.10020-101D2</option>
| |
| <option value="CNhs10627.10021-101D3">CNhs10627.10021-101D3</option>
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| <option value="CNhs10628.10022-101D4">CNhs10628.10022-101D4</option>
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| <option value="CNhs10629.10023-101D5">CNhs10629.10023-101D5</option>
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| <option value="CNhs10630.10024-101D6">CNhs10630.10024-101D6</option>
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| <option value="CNhs10631.10025-101D7">CNhs10631.10025-101D7</option>
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| <option value="CNhs10632.10026-101D8">CNhs10632.10026-101D8</option>
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| <option value="CNhs10633.10027-101D9">CNhs10633.10027-101D9</option>
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| <option value="CNhs10634.10028-101E1">CNhs10634.10028-101E1</option>
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| <option value="CNhs10635.10029-101E2">CNhs10635.10029-101E2</option>
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| <option value="CNhs10636.10030-101E3">CNhs10636.10030-101E3</option>
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| <option value="CNhs10637.10031-101E4">CNhs10637.10031-101E4</option>
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| <option value="CNhs10638.10032-101E5">CNhs10638.10032-101E5</option>
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| <option value="CNhs10640.10033-101E6">CNhs10640.10033-101E6</option>
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| <option value="CNhs10641.10034-101E7">CNhs10641.10034-101E7</option>
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| <option value="CNhs10642.10035-101E8">CNhs10642.10035-101E8</option>
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| <option value="CNhs10643.10036-101E9">CNhs10643.10036-101E9</option>
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| <option value="CNhs10644.10037-101F1">CNhs10644.10037-101F1</option>
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| <option value="CNhs10645.10038-101F2">CNhs10645.10038-101F2</option>
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| <option value="CNhs10646.10039-101F3">CNhs10646.10039-101F3</option>
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| <option value="CNhs10647.10040-101F4">CNhs10647.10040-101F4</option>
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| <option value="CNhs10648.10041-101F5">CNhs10648.10041-101F5</option>
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| <option value="CNhs10649.10042-101F6">CNhs10649.10042-101F6</option>
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| <option value="CNhs10650.10043-101F7">CNhs10650.10043-101F7</option>
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| <option value="CNhs10651.10044-101F8">CNhs10651.10044-101F8</option>
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| <option value="CNhs10652.10045-101F9">CNhs10652.10045-101F9</option>
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| <option value="CNhs10653.10046-101G1">CNhs10653.10046-101G1</option>
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| <option value="CNhs10654.10047-101G2">CNhs10654.10047-101G2</option>
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| <option value="CNhs10722.10399-106A3">CNhs10722.10399-106A3</option>
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| <option value="CNhs10723.10400-106A4">CNhs10723.10400-106A4</option>
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| <option value="CNhs10724.10405-106A9">CNhs10724.10405-106A9</option>
| |
| <option value="CNhs10726.10408-106B3">CNhs10726.10408-106B3</option>
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| <option value="CNhs10727.10409-106B4">CNhs10727.10409-106B4</option>
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| <option value="CNhs10728.10410-106B5">CNhs10728.10410-106B5</option>
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| <option value="CNhs10729.10411-106B6">CNhs10729.10411-106B6</option>
| |
| <option value="CNhs10730.10412-106B7">CNhs10730.10412-106B7</option>
| |
| <option value="CNhs10731.10413-106B8">CNhs10731.10413-106B8</option>
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| <option value="CNhs10732.10414-106B9">CNhs10732.10414-106B9</option>
| |
| <option value="CNhs10733.10415-106C1">CNhs10733.10415-106C1</option>
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| <option value="CNhs10734.10417-106C3">CNhs10734.10417-106C3</option>
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| <option value="CNhs10735.10418-106C4">CNhs10735.10418-106C4</option>
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| <option value="CNhs10736.10419-106C5">CNhs10736.10419-106C5</option>
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| <option value="CNhs10737.10420-106C6">CNhs10737.10420-106C6</option>
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| <option value="CNhs10738.10421-106C7">CNhs10738.10421-106C7</option>
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| <option value="CNhs10739.10422-106C8">CNhs10739.10422-106C8</option>
| |
| <option value="CNhs10740.10423-106C9">CNhs10740.10423-106C9</option>
| |
| <option value="CNhs10741.10424-106D1">CNhs10741.10424-106D1</option>
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| <option value="CNhs10742.10425-106D2">CNhs10742.10425-106D2</option>
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| <option value="CNhs10743.10426-106D3">CNhs10743.10426-106D3</option>
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| <option value="CNhs10744.10427-106D4">CNhs10744.10427-106D4</option>
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| <option value="CNhs10745.10428-106D5">CNhs10745.10428-106D5</option>
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| <option value="CNhs10746.10429-106D6">CNhs10746.10429-106D6</option>
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| <option value="CNhs10747.10430-106D7">CNhs10747.10430-106D7</option>
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| <option value="CNhs10748.10431-106D8">CNhs10748.10431-106D8</option>
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| <option value="CNhs10750.10432-106D9">CNhs10750.10432-106D9</option>
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| <option value="CNhs10751.10433-106E1">CNhs10751.10433-106E1</option>
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| <option value="CNhs10752.10434-106E2">CNhs10752.10434-106E2</option>
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| <option value="CNhs10753.10436-106E4">CNhs10753.10436-106E4</option>
| |
| <option value="CNhs10837.11207-116A1">CNhs10837.11207-116A1</option>
| |
| <option value="CNhs10838.11210-116A4">CNhs10838.11210-116A4</option>
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| <option value="CNhs10839.11212-116A6">CNhs10839.11212-116A6</option>
| |
| <option value="CNhs10842.11215-116A9">CNhs10842.11215-116A9</option>
| |
| <option value="CNhs10843.11216-116B1">CNhs10843.11216-116B1</option>
| |
| <option value="CNhs10844.11217-116B2">CNhs10844.11217-116B2</option>
| |
| <option value="CNhs10845.11218-116B3">CNhs10845.11218-116B3</option>
| |
| <option value="CNhs10847.11220-116B5">CNhs10847.11220-116B5</option>
| |
| <option value="CNhs10848.11222-116B7">CNhs10848.11222-116B7</option>
| |
| <option value="CNhs10850.11247-116E5">CNhs10850.11247-116E5</option>
| |
| <option value="CNhs10851.11255-116F4">CNhs10851.11255-116F4</option>
| |
| <option value="CNhs10852.11224-116B9">CNhs10852.11224-116B9</option>
| |
| <option value="CNhs10853.11225-116C1">CNhs10853.11225-116C1</option>
| |
| <option value="CNhs10854.11226-116C2">CNhs10854.11226-116C2</option>
| |
| <option value="CNhs10855.11227-116C3">CNhs10855.11227-116C3</option>
| |
| <option value="CNhs10857.11228-116C4">CNhs10857.11228-116C4</option>
| |
| <option value="CNhs10858.11229-116C5">CNhs10858.11229-116C5</option>
| |
| <option value="CNhs10859.11230-116C6">CNhs10859.11230-116C6</option>
| |
| <option value="CNhs10860.11231-116C7">CNhs10860.11231-116C7</option>
| |
| <option value="CNhs10861.11232-116C8">CNhs10861.11232-116C8</option>
| |
| <option value="CNhs10862.11233-116C9">CNhs10862.11233-116C9</option>
| |
| <option value="CNhs10863.11234-116D1">CNhs10863.11234-116D1</option>
| |
| <option value="CNhs10864.11235-116D2">CNhs10864.11235-116D2</option>
| |
| <option value="CNhs10865.11236-116D3">CNhs10865.11236-116D3</option>
| |
| <option value="CNhs10866.11237-116D4">CNhs10866.11237-116D4</option>
| |
| <option value="CNhs10867.11238-116D5">CNhs10867.11238-116D5</option>
| |
| <option value="CNhs10868.11239-116D6">CNhs10868.11239-116D6</option>
| |
| <option value="CNhs10869.11240-116D7">CNhs10869.11240-116D7</option>
| |
| <option value="CNhs10870.11241-116D8">CNhs10870.11241-116D8</option>
| |
| <option value="CNhs10871.11242-116D9">CNhs10871.11242-116D9</option>
| |
| <option value="CNhs10872.11243-116E1">CNhs10872.11243-116E1</option>
| |
| <option value="CNhs10874.11245-116E3">CNhs10874.11245-116E3</option>
| |
| <option value="CNhs10875.11246-116E4">CNhs10875.11246-116E4</option>
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| <option value="CNhs10876.11248-116E6">CNhs10876.11248-116E6</option>
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| <option value="CNhs10882.11253-116F2">CNhs10882.11253-116F2</option>
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| |
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| |
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| |
| <option value="CNhs11047.10451-106G1">CNhs11047.10451-106G1</option>
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| |
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| |
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| |
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| |
| <option value="CNhs11054.11473-119C6">CNhs11054.11473-119C6</option>
| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| <option value="CNhs13540.11910-125G2">CNhs13540.11910-125G2</option>
| |
| <option value="CNhs13541.11789-124B7">CNhs13541.11789-124B7</option>
| |
| <option value="CNhs13543.11880-125C8">CNhs13543.11880-125C8</option>
| |
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| |
| <option value="CNhs13545.11885-125D4">CNhs13545.11885-125D4</option>
| |
| <option value="CNhs13546.11887-125D6">CNhs13546.11887-125D6</option>
| |
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| |
| <option value="CNhs13548.11911-125G3">CNhs13548.11911-125G3</option>
| |
| <option value="CNhs13549.11912-125G4">CNhs13549.11912-125G4</option>
| |
| <option value="CNhs13550.11929-125I3">CNhs13550.11929-125I3</option>
| |
| <option value="CNhs13551.11930-125I4">CNhs13551.11930-125I4</option>
| |
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| |
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| |
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| |
| <option value="CNhs13646.13317-143A5">CNhs13646.13317-143A5</option>
| |
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| |
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| |
| <option value="CNhs13793.10167-103B5">CNhs13793.10167-103B5</option>
| |
| <option value="CNhs13794.10168-103B6">CNhs13794.10168-103B6</option>
| |
| <option value="CNhs13795.10169-103B7">CNhs13795.10169-103B7</option>
| |
| <option value="CNhs13796.10170-103B8">CNhs13796.10170-103B8</option>
| |
| <option value="CNhs13797.10171-103B9">CNhs13797.10171-103B9</option>
| |
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| |
| <option value="CNhs13799.10173-103C2">CNhs13799.10173-103C2</option>
| |
| <option value="CNhs13800.10174-103C3">CNhs13800.10174-103C3</option>
| |
| <option value="CNhs13801.10175-103C4">CNhs13801.10175-103C4</option>
| |
| <option value="CNhs13802.10177-103C6">CNhs13802.10177-103C6</option>
| |
| <option value="CNhs13804.10179-103C8">CNhs13804.10179-103C8</option>
| |
| <option value="CNhs13805.10180-103C9">CNhs13805.10180-103C9</option>
| |
| <option value="CNhs13807.10181-103D1">CNhs13807.10181-103D1</option>
| |
| <option value="CNhs13808.10182-103D2">CNhs13808.10182-103D2</option>
| |
| <option value="CNhs13809.10183-103D3">CNhs13809.10183-103D3</option>
| |
| <option value="CNhs13811.11916-125G8">CNhs13811.11916-125G8</option>
| |
| <option value="CNhs13812.11920-125H3">CNhs13812.11920-125H3</option>
| |
| <option value="CNhs13813.11913-125G5">CNhs13813.11913-125G5</option>
| |
| <option value="CNhs13814.11917-125G9">CNhs13814.11917-125G9</option>
| |
| <option value="CNhs13815.11655-122E8">CNhs13815.11655-122E8</option>
| |
| <option value="CNhs13816.11933-125I7">CNhs13816.11933-125I7</option>
| |
| <option value="CNhs13817.11934-125I8">CNhs13817.11934-125I8</option>
| |
| <option value="CNhs13818.11935-125I9">CNhs13818.11935-125I9</option> | |
| <option value="CNhs13819.11936-126A1">CNhs13819.11936-126A1</option>
| |
| <option value="CNhs13822.13425-144D5">CNhs13822.13425-144D5</option>
| |
| <option value="CNhs13826.13433-144E4">CNhs13826.13433-144E4</option>
| |
| <option value="CNhs13839.13437-144E8">CNhs13839.13437-144E8</option>
| |
| <option value="CNhs13847.13469-144I4">CNhs13847.13469-144I4</option>
| |
| </select> <button id="cyto_load">Load</button>
| |
| <br />B = <select id="sample_b">
| |
| <option value="" selected>(none)</option>
| |
| <option value="CNhs10608.10000-101A1">CNhs10608.10000-101A1</option>
| |
| <option value="CNhs10610.10002-101A5">CNhs10610.10002-101A5</option>
| |
| <option value="CNhs10612.10007-101B4">CNhs10612.10007-101B4</option>
| |
| <option value="CNhs10615.10010-101C1">CNhs10615.10010-101C1</option>
| |
| <option value="CNhs10616.10011-101C2">CNhs10616.10011-101C2</option>
| |
| <option value="CNhs10617.10012-101C3">CNhs10617.10012-101C3</option>
| |
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| |
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| |
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| |
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| |
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| |
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| |
| <option value="CNhs10625.10019-101D1">CNhs10625.10019-101D1</option>
| |
| <option value="CNhs10626.10020-101D2">CNhs10626.10020-101D2</option>
| |
| <option value="CNhs10627.10021-101D3">CNhs10627.10021-101D3</option>
| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
| <option value="CNhs10723.10400-106A4">CNhs10723.10400-106A4</option>
| |
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| |
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| |
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| |
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| |
| <option value="CNhs10729.10411-106B6">CNhs10729.10411-106B6</option>
| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
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| |
| <option value="CNhs13507.11842-124H6">CNhs13507.11842-124H6</option>
| |
| <option value="CNhs13508.11843-124H7">CNhs13508.11843-124H7</option>
| |
| <option value="CNhs13512.11906-125F7">CNhs13512.11906-125F7</option>
| |
| <option value="CNhs13513.11907-125F8">CNhs13513.11907-125F8</option>
| |
| <option value="CNhs13532.11874-125C2">CNhs13532.11874-125C2</option>
| |
| <option value="CNhs13533.11875-125C3">CNhs13533.11875-125C3</option>
| |
| <option value="CNhs13535.11901-125F2">CNhs13535.11901-125F2</option>
| |
| <option value="CNhs13536.11902-125F3">CNhs13536.11902-125F3</option>
| |
| <option value="CNhs13537.11904-125F5">CNhs13537.11904-125F5</option>
| |
| <option value="CNhs13538.11908-125F9">CNhs13538.11908-125F9</option>
| |
| <option value="CNhs13539.11909-125G1">CNhs13539.11909-125G1</option>
| |
| <option value="CNhs13540.11910-125G2">CNhs13540.11910-125G2</option>
| |
| <option value="CNhs13541.11789-124B7">CNhs13541.11789-124B7</option>
| |
| <option value="CNhs13543.11880-125C8">CNhs13543.11880-125C8</option>
| |
| <option value="CNhs13544.11882-125D1">CNhs13544.11882-125D1</option>
| |
| <option value="CNhs13545.11885-125D4">CNhs13545.11885-125D4</option>
| |
| <option value="CNhs13546.11887-125D6">CNhs13546.11887-125D6</option>
| |
| <option value="CNhs13547.11903-125F4">CNhs13547.11903-125F4</option>
| |
| <option value="CNhs13548.11911-125G3">CNhs13548.11911-125G3</option>
| |
| <option value="CNhs13549.11912-125G4">CNhs13549.11912-125G4</option>
| |
| <option value="CNhs13550.11929-125I3">CNhs13550.11929-125I3</option>
| |
| <option value="CNhs13551.11930-125I4">CNhs13551.11930-125I4</option>
| |
| <option value="CNhs13552.11931-125I5">CNhs13552.11931-125I5</option>
| |
| <option value="CNhs13553.11932-125I6">CNhs13553.11932-125I6</option>
| |
| <option value="CNhs13639.13311-142I8">CNhs13639.13311-142I8</option>
| |
| <option value="CNhs13646.13317-143A5">CNhs13646.13317-143A5</option>
| |
| <option value="CNhs13650.13323-143B2">CNhs13650.13323-143B2</option>
| |
| <option value="CNhs13738.13366-143F9">CNhs13738.13366-143F9</option>
| |
| <option value="CNhs13793.10167-103B5">CNhs13793.10167-103B5</option>
| |
| <option value="CNhs13794.10168-103B6">CNhs13794.10168-103B6</option>
| |
| <option value="CNhs13795.10169-103B7">CNhs13795.10169-103B7</option>
| |
| <option value="CNhs13796.10170-103B8">CNhs13796.10170-103B8</option>
| |
| <option value="CNhs13797.10171-103B9">CNhs13797.10171-103B9</option>
| |
| <option value="CNhs13798.10172-103C1">CNhs13798.10172-103C1</option>
| |
| <option value="CNhs13799.10173-103C2">CNhs13799.10173-103C2</option>
| |
| <option value="CNhs13800.10174-103C3">CNhs13800.10174-103C3</option>
| |
| <option value="CNhs13801.10175-103C4">CNhs13801.10175-103C4</option>
| |
| <option value="CNhs13802.10177-103C6">CNhs13802.10177-103C6</option>
| |
| <option value="CNhs13804.10179-103C8">CNhs13804.10179-103C8</option>
| |
| <option value="CNhs13805.10180-103C9">CNhs13805.10180-103C9</option>
| |
| <option value="CNhs13807.10181-103D1">CNhs13807.10181-103D1</option>
| |
| <option value="CNhs13808.10182-103D2">CNhs13808.10182-103D2</option>
| |
| <option value="CNhs13809.10183-103D3">CNhs13809.10183-103D3</option>
| |
| <option value="CNhs13811.11916-125G8">CNhs13811.11916-125G8</option>
| |
| <option value="CNhs13812.11920-125H3">CNhs13812.11920-125H3</option>
| |
| <option value="CNhs13813.11913-125G5">CNhs13813.11913-125G5</option>
| |
| <option value="CNhs13814.11917-125G9">CNhs13814.11917-125G9</option>
| |
| <option value="CNhs13815.11655-122E8">CNhs13815.11655-122E8</option>
| |
| <option value="CNhs13816.11933-125I7">CNhs13816.11933-125I7</option>
| |
| <option value="CNhs13817.11934-125I8">CNhs13817.11934-125I8</option>
| |
| <option value="CNhs13818.11935-125I9">CNhs13818.11935-125I9</option>
| |
| <option value="CNhs13819.11936-126A1">CNhs13819.11936-126A1</option>
| |
| <option value="CNhs13822.13425-144D5">CNhs13822.13425-144D5</option>
| |
| <option value="CNhs13826.13433-144E4">CNhs13826.13433-144E4</option>
| |
| <option value="CNhs13839.13437-144E8">CNhs13839.13437-144E8</option>
| |
| <option value="CNhs13847.13469-144I4">CNhs13847.13469-144I4</option>
| |
| </select> | |
| <p /> | | <p /> |
| <div id="sample_filter"> | | <div id="sample_filter"> |
| <br><input type="radio" name="sample" value="" checked>Union: A || B | | <br><input type="radio" name="sample" value="" checked>Union: A || B |
| <br><input type="radio" name="sample" value=",">Intersection: A && B | | <br><input type="radio" name="sample" value=",">Intersection: A && B |
| <br><input type="radio" name="sample" value="^_A$">Difference: A - B | | <br><input type="radio" name="sample" value="^_A$">Difference: A - B |
| <br><input type="radio" name="sample" value="^_B$">Difference: B - A | | <br><input type="radio" name="sample" value="^_B$">Difference: B - A |
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| <br><input type="radio" name="sample" value="_B">Subnetwork: B | | <br><input type="radio" name="sample" value="_B">Subnetwork: B |
| </div> | | </div> |
| | </div> |
| | <div id="help_panel"> |
| | <h3>About this network view.</h3> |
| | <p> |
| | Motifs shown are the top motifs in the sample (maximum 30). TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression). |
| | </p> |
| | <p> |
| | In the single sample view motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange. |
| | </p> |
| | <h3>How to interact with the network?</h3> |
| | <p> |
| | Zoom using the control panel in the lower right. |
| | <br />Click and drag to move nodes. |
| | <br />Double click to search for label in resource browser. |
| | <br />Mouse over nodes and edges to see additional attributes. |
| | <br />Hover over a node to highlight its first neighbors. |
| | <br />Click and drag or shift-click on the canvas to highlight many nodes and edges. |
| | <br />Right click on a node to select its first neighbors. |
| | <br />Right click to show only selected nodes. |
| | <br />When nodes are selected additional information is available in the pull out panel. |
| | <br />Addition filters are available within the pull out panel. |
| | </p> |
| | <h3>Acknowledgments</h3> |
| | <p> |
| | Analyst: Erik Arner |
| | <br />Application Developer: Jayson Harshbarger |
| | <p> |
| | Research Grant for RIKEN Omics Science Center from MEXT to Yoshihide Hayashizaki |
| | <br />Grant of the Innovative Cell Biology by Innovative Technology (Cell Innovation Program) from the MEXT, Japan to Yoshihide Hayashizaki |
| | </p> |
| | </p> |
| </div> | | </div> |
| </div> | | </div> |
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|
| |
|
| <!-- Header Section --> | | <!-- Header Section --> |
| | <!-- CSS (To ensure CSS files are downloaded in parallel, always include external CSS before external JavaScript.) --> |
| | <link href="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.10/themes/base/jquery-ui.css" rel="stylesheet" /> |
| | <link href="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.10/themes/redmond/jquery-ui.css" rel="stylesheet" /> |
| | <link href="/resource_browser/nwfiles/js/wijmo/jquery.wijmo-complete.all.2.1.4.min.css" rel="stylesheet" type="text/css" /> |
| | <link href="/resource_browser/nwfiles/css/f5_cytoview_7.min.css" rel="stylesheet"/> |
| | |
| <!-- JQuery --> | | <!-- JQuery --> |
| <script type="text/javascript" src="//ajax.googleapis.com/ajax/libs/jquery/1.7.2/jquery.min.js"></script> | | <!-- script type="text/javascript" src="//ajax.googleapis.com/ajax/libs/jquery/1.7.2/jquery.min.js"></script --> |
| <script src="/resource_browser/nwfiles/js/jquery.ba-throttle-debounce.min.js" type="text/javascript"></script> | | <script src="/resource_browser/nwfiles/js/jquery.ba-throttle-debounce.min.js" type="text/javascript"></script> |
|
| |
|
| <!-- JQuery UI --> | | <!-- JQuery UI --> |
| <script type="text/javascript" src="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.18/jquery-ui.min.js"></script> | | <script type="text/javascript" src="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.18/jquery-ui.min.js"></script> |
| <link href="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.10/themes/base/jquery-ui.css" rel="stylesheet" />
| |
| <link href="//ajax.googleapis.com/ajax/libs/jqueryui/1.8.10/themes/redmond/jquery-ui.css" rel="stylesheet" />
| |
|
| |
|
| <!-- wWijmo Widgets --> | | <!-- wWijmo Widgets --> |
| <script src="http://cdn.wijmo.com/jquery.wijmo-open.all.2.1.4.min.js" type="text/javascript"></script> | | <script src="/resource_browser/nwfiles/js/wijmo/jquery.wijmo-open.all.2.1.4.min.js" type="text/javascript"></script> |
| <link href="http://cdn.wijmo.com/jquery.wijmo-complete.all.2.1.4.min.css" rel="stylesheet" type="text/css" /> | | |
| | <!-- tokeninput --> |
| | <script type="text/javascript" src="/resource_browser/nwfiles/js/jquery.tokeninput.js"></script> |
|
| |
|
| <!-- JSON support for IE (needed to use JS API) --> | | <!-- JSON support for IE (needed to use JS API) --> |
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| <!-- Cytoscape Web JS API (needed to reference org.cytoscapeweb.Visualization) --> | | <!-- Cytoscape Web JS API (needed to reference org.cytoscapeweb.Visualization) --> |
| <script type="text/javascript" src="/resource_browser/rb_js/cytoscapeweb/js/min/cytoscapeweb.min.js"></script> | | <script type="text/javascript" src="/resource_browser/rb_js/cytoscapeweb/js/min/cytoscapeweb.min.js"></script> |
| | | |
| <!-- F5 Cytoscape app -->
| |
| <link href="/resource_browser/nwfiles/css/f5_cytoview_3.css" rel="stylesheet"/>
| |
| <script type="text/javascript" src="/resource_browser/nwfiles/js/encode_decode.js"></script>
| |
| <script type="text/javascript" src="/resource_browser/nwfiles/js/f5_cytoview_6.js"></script> | |
|
| |
|
| <!-- Data Loading Section --> | | <!-- Data Loading Section --> |
| <script type="text/javascript"> | | <script type="text/javascript"> |
| // Set initial sample
| |
| BUILD.path = /resource_browser/nwfiles/'tfnetworks/';
| |
| $("#sample_a").val('CNhs10746.10429-106D6');
| |
|
| |
|
| // initialization cytoscape options | | $(document).ready(function() { |
| var options = { | | |
| swfPath: "/resource_browser/rb_js/cytoscapeweb/swf/CytoscapeWeb",
| | // Options for FANTOM5 Network view app |
| flashInstallerPath: "/resource_browser/rb_js/cytoscapeweb/swf/playerProductInstall"
| | var o = { |
| }; | | networkPath: '/resource_browser/nwfiles/tfnetworks/', |
| | initSample: 'CNhs10746.10429-106D6', |
| | samplesPath: '/resource_browser/nwfiles/js/hg19_samples.json', |
| | swfPath: "/resource_browser/rb_js/cytoscapeweb/swf/CytoscapeWeb", |
| | flashInstallerPath: "/resource_browser/rb_js/cytoscapeweb/swf/playerProductInstall", |
| | linkOutPath: "/resource_browser/RB_SearchResults?sq=" |
| | } |
| | |
| | riken.f5_network_vis.start(o); |
| | }); |
| </script> | | </script> |
| | <script type="text/javascript" src="/resource_browser/nwfiles/js/f5_cytoview_7.min.js"></script> |
|
| |
|
| </html> | | </html> |