FFCP PHASE1:Hg19::chr11:61717336..61717351,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7439 | |EntrezGene=7439 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12703 | |HGNC=12703 | ||
|TSSclassifier=strong | |||
|UniProt=O76090 | |UniProt=O76090 | ||
|association_with_transcript=-4bp_to_ENST00000378042,NM_001139443,NM_004183,uc001nsq.2,uc001nsr.2,uc001nss.2,uc001nst.2,uc009ynt.2,uc010rlp.1,uc010rlq.1,uc010rlr.1,uc010rls.1,uc010rlt.1_5end | |association_with_transcript=-4bp_to_ENST00000378042,NM_001139443,NM_004183,uc001nsq.2,uc001nsr.2,uc001nss.2,uc001nst.2,uc009ynt.2,uc010rlp.1,uc010rlq.1,uc010rlr.1,uc010rls.1,uc010rlt.1_5end | ||
|cluster_id=chr11:61717336..61717351,+ | |||
|coexpression_cluster_id=C21 | |coexpression_cluster_id=C21 | ||
|description=CAGE_peak_11_at_BEST1_5end | |description=CAGE_peak_11_at_BEST1_5end | ||
|id=chr11:61717336..61717351,+ | |id=chr11:61717336..61717351,+ | ||
|ontology_enrichment_celltype=CL:0000167;3.31e-09;1!CL:0000164;3.31e-09;1!CL:0000502;3.31e-09;1!CL:0000172;3.31e-09;1!CL:0000173;3.31e-09;1!CL:0000333;4.72e-07;5 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0000167;3.31e-09;1!CL:0000164;3.31e-09;1!CL:0000502;3.31e-09;1!CL:0000172;3.31e-09;1!CL:0000173;3.31e-09;1!CL:0000333;4.72e-07;5 | ||
|ontology_enrichment_disease=DOID:171;2.19e-12;10!DOID:169;3.55e-12;6!DOID:4430;3.31e-09;1!DOID:1749;7.38e-09;14!DOID:3371;1.32e-08;1!DOID:4549;1.32e-08;1!DOID:5861;1.32e-08;1!DOID:6496;1.32e-08;1!DOID:5409;1.78e-08;4!DOID:3905;3.75e-08;9 | |ontology_enrichment_celltype_v019_2=CL:0000167,3.31e-09,1;CL:0000164,3.31e-09,1;CL:0000502,3.31e-09,1;CL:0000172,3.31e-09,1;CL:0000173,3.31e-09,1;CL:0002351,3.31e-09,1 | ||
|ontology_enrichment_uberon=UBERON:0000941;1.32e-08;1!UBERON:0001785;1.32e-08;1!UBERON:0002464;1.32e-08;1!UBERON:0004904;1.32e-08;1!UBERON:0001021;1.32e-08;1!UBERON:0000010;4.39e-08;8!UBERON:0000013;4.72e-07;5!UBERON:0002410;4.72e-07;5 | |ontology_enrichment_development_v019=CL:0002351;3.31e-09;1!UBERON:0005425;1.32e-08;1 | ||
|ontology_enrichment_disease=DOID:0050687!5.88e-21!143;DOID:162!7.58e-18!235;DOID:14566!1.23e-17!239;DOID:305!1.12e-11!106;DOID:3095!1.70e-09!22;DOID:2994!1.70e-09!22;DOID:171!7.70e-09!10;DOID:0050686!1.23e-07!137;DOID:3119!3.87e-07!14;DOID:169!8.23e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:171;2.19e-12;10!DOID:169;3.55e-12;6!DOID:4430;3.31e-09;1!DOID:1749;7.38e-09;14!DOID:3371;1.32e-08;1!DOID:4549;1.32e-08;1!DOID:5861;1.32e-08;1!DOID:6496;1.32e-08;1!DOID:5409;1.78e-08;4!DOID:3905;3.75e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.43e-12,10;DOID:169,3.24e-12,6;DOID:0050687,7.08e-12,143;DOID:4430,3.31e-09,1;DOID:1749,7.77e-09,14;DOID:3371,1.91e-08,1;DOID:4549,1.91e-08,1;DOID:5861,1.91e-08,1;DOID:6496,1.91e-08,1;DOID:5409,2.07e-08,4;DOID:3905,4.23e-08,9;DOID:305,5.28e-08,106;DOID:162,7.69e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000010!2.08e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.32e-08;1!UBERON:0001785;1.32e-08;1!UBERON:0002464;1.32e-08;1!UBERON:0004904;1.32e-08;1!UBERON:0001021;1.32e-08;1!UBERON:0000010;4.39e-08;8!UBERON:0000013;4.72e-07;5!UBERON:0002410;4.72e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.42e-08,1;UBERON:0001785,1.42e-08,1;UBERON:0002464,1.42e-08,1;UBERON:0004904,1.42e-08,1;UBERON:0001021,1.42e-08,1;UBERON:0003902,1.42e-08,1;UBERON:0005425,1.42e-08,1;UBERON:0001781,3.22e-08,4;UBERON:0000010,4.23e-08,8;UBERON:0000013,4.38e-07,5;UBERON:0002410,4.38e-07,5 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,1.72101972449288,0,0,0,0.24666754841716,0,0.269421344139376,0,0,0,0.468642863667593,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0.515281080091258,0,0.168776332241266,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0.651616610620649,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0.224170287987055,0,0,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0.828831026872071,0,0,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0.664225598535437,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0.384417447767103,0,0.160853921143607,0,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62689197332152,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0.495854746082934,0,0,0.4046311234222,0,1.5740617341532,0,0,0,0,0.18532421910392,0.286249773483982,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0.405820753925408,0,0,0,0.0982490410131212,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,1.35169502361987,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,2.43282702530686,0,0,0.222886768554957,0,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0.311039587661807,0.179736702294654,1.79021174675609,0,0,0,0,0,0,0,0.520855522170466,0,0,0.1137934482855,0,0,0.689486746482929,0.291604613383254,0.347249989866585,0,0,0,0,0,0,0,0.41827123283581,0,0,0,0.448788222048861,0,0,0,0,0,0,0,0,0.19606253431774,0.503464760927528,0,0,0,0.489698424477443,0,0.432777279484182,0,0,0.611030144933625,18.3843099781986,1.72989514525104,0.522109747527277,0,0,0,0,0.978323094660449,0.242780379534093,0,0,0,0,2.55549813004637,0.103688191397247,0,0,0,0,1.99226682220855,0.554698692052555,0,0.0979923974143777,0,0,0.343972064943233,0,0.146178634172371,0,0,1.059073520298,0,0,0,0,0,0,0,0.39961921916426,0.432271251462318,0,1.54435498075768,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16540459332447,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,3.26255835443057,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0.573409195690071,0,0,0.138348634936231,0,0.454947352624943,0,0,0,0,0,0,0,0,0,0,0.686520205190771,0.302461847526478,0,0,0,0.899606224327209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0.491545817507439,0.211312123358627,0,0,0.516644938982447,0,0.552317850755522,0,0,2.55788742607303,0,3.61711666268562,0.327628914576042,0.169732529954025,0,0.495743057036009,0.558644917973244,0.318004350653419,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,1.42769420259154,2.45369296252564,0.589848616738702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05522746615772,0.511049710558381,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0,0,0.840816489941367,0,0,0,0,0,0,0.869291361512897,0,0,0,0,0,0,0.170426809518315,0,0,0,0,0,2.25745537315059,0.243835849964539,0,0,0,0,0.233939463462106,0.397901550322736,0,1.1294608203896,0,6.79332796050031,0,0,0,0,9.66273843116666,0,0.297046400327086,0,0,0,0,0,1.2498775702396,3.88184358887261,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0.109265571963696,0,0.305966489225945,0.801652215796681,0.18378979906969,0.250707539292375,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213454691755431,0,0.718601616852695,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0.28769239232215,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,1.72101972449288,0,0,0,0.24666754841716,0,0.269421344139376,0,0,0,0.468642863667593,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0.515281080091258,0,0.168776332241266,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0.651616610620649,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0.224170287987055,0,0,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0.828831026872071,0,0,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0.664225598535437,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0.384417447767103,0,0.160853921143607,0,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62689197332152,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0.495854746082934,0,0,0.4046311234222,0,1.5740617341532,0,0,0,0,0.18532421910392,0.286249773483982,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0.405820753925408,0,0,0,0.0982490410131212,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,1.35169502361987,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,2.43282702530686,0,0,0.222886768554957,0,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0.311039587661807,0.179736702294654,1.79021174675609,0,0,0,0,0,0,0,0.520855522170466,0,0,0.1137934482855,0,0,0.689486746482929,0.291604613383254,0.347249989866585,0,0,0,0,0,0,0,0.41827123283581,0,0,0,0.448788222048861,0,0,0,0,0,0,0,0,0.19606253431774,0.503464760927528,0,0,0,0.489698424477443,0,0.432777279484182,0,0,0.611030144933625,18.3843099781986,1.72989514525104,0.522109747527277,0,0,0,0,0.978323094660449,0.242780379534093,0,0,0,0,2.55549813004637,0.103688191397247,0,0,0,0,1.99226682220855,0.554698692052555,0,0.0979923974143777,0,0,0.343972064943233,0,0.146178634172371,0,0,1.059073520298,0,0,0,0,0,0,0,0.39961921916426,0.432271251462318,0,1.54435498075768,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16540459332447,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,3.26255835443057,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0.573409195690071,0,0,0.138348634936231,0,0.454947352624943,0,0,0,0,0,0,0,0,0,0,0.686520205190771,0.302461847526478,0,0,0,0.899606224327209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0.491545817507439,0.211312123358627,0,0,0.516644938982447,0,0.552317850755522,0,0,2.55788742607303,0,3.61711666268562,0.327628914576042,0.169732529954025,0,0.495743057036009,0.558644917973244,0.318004350653419,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,1.42769420259154,2.45369296252564,0.589848616738702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05522746615772,0.511049710558381,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0,0,0.840816489941367,0,0,0,0,0,0,0.869291361512897,0,0,0,0,0,0,0.170426809518315,0,0,0,0,0,2.25745537315059,0.243835849964539,0,0,0,0,0.233939463462106,0.397901550322736,0,1.1294608203896,0,6.79332796050031,0,0,0,0,9.66273843116666,0,0.297046400327086,0,0,0,0,0,1.2498775702396,3.88184358887261,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0.109265571963696,0,0.305966489225945,0.801652215796681,0.18378979906969,0.250707539292375,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213454691755431,0,0.718601616852695,0,0,0,0,0,0 | ||
|short_description=p11@BEST1 | |short_description=p11@BEST1 | ||
}} | }} |
Latest revision as of 17:38, 18 September 2015
Short description: | p11@BEST1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_BEST1_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | -4bp_to_ENST00000378042, NM_001139443, NM_004183, uc001nsq.2, uc001nsr.2, uc001nss.2, uc001nst.2, uc009ynt.2, uc010rlp.1, uc010rlq.1, uc010rlr.1, uc010rls.1, uc010rlt.1_5end |
EntrezGene: | BEST1 |
HGNC: | 12703 |
UniProt: | O76090 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 3.31e-09 | 1 |
enteroendocrine cell | 3.31e-09 | 1 |
type D enteroendocrine cell | 3.31e-09 | 1 |
somatostatin secreting cell | 3.31e-09 | 1 |
pancreatic D cell | 3.31e-09 | 1 |
progenitor cell of endocrine pancreas | 3.31e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.42e-08 | 1 |
cranial nerve | 1.42e-08 | 1 |
nerve trunk | 1.42e-08 | 1 |
nerve connecting eye with brain | 1.42e-08 | 1 |
nerve | 1.42e-08 | 1 |
retinal neural layer | 1.42e-08 | 1 |
presumptive neural retina | 1.42e-08 | 1 |
layer of retina | 3.22e-08 | 4 |
peripheral nervous system | 4.23e-08 | 8 |
sympathetic nervous system | 4.38e-07 | 5 |
autonomic nervous system | 4.38e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.43e-12 | 10 |
neuroendocrine tumor | 3.24e-12 | 6 |
cell type cancer | 7.08e-12 | 143 |
somatostatinoma | 3.31e-09 | 1 |
squamous cell carcinoma | 7.77e-09 | 14 |
chondrosarcoma | 1.91e-08 | 1 |
extraosseous chondrosarcoma | 1.91e-08 | 1 |
myxoid chondrosarcoma | 1.91e-08 | 1 |
extraskeletal myxoid chondrosarcoma | 1.91e-08 | 1 |
lung small cell carcinoma | 2.07e-08 | 4 |
lung carcinoma | 4.23e-08 | 9 |
carcinoma | 5.28e-08 | 106 |
cancer | 7.69e-07 | 235 |