FFCP PHASE1:Hg19::chr1:31907237..31907260,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:31907237..31907260,+ | |||
|coexpression_cluster_id=C3969 | |coexpression_cluster_id=C3969 | ||
|description=CAGE_peak_at_chr1:31907237..31907260,+ | |description=CAGE_peak_at_chr1:31907237..31907260,+ | ||
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|ontology_enrichment_celltype=CL:0002321!1.07e-12!248;CL:0000220!1.08e-12!246;CL:0000066!4.38e-10!254;CL:0002076!7.40e-10!43;CL:0000223!1.51e-09!59;CL:0002159!6.03e-08!13;CL:0002077!1.19e-07!33;CL:0002368!1.35e-07!13;CL:0000183!2.55e-07!59;CL:0002371!4.62e-07!591;CL:0000144!5.27e-07!625 | |ontology_enrichment_celltype=CL:0002321!1.07e-12!248;CL:0000220!1.08e-12!246;CL:0000066!4.38e-10!254;CL:0002076!7.40e-10!43;CL:0000223!1.51e-09!59;CL:0002159!6.03e-08!13;CL:0002077!1.19e-07!33;CL:0002368!1.35e-07!13;CL:0000183!2.55e-07!59;CL:0002371!4.62e-07!591;CL:0000144!5.27e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0002368;7.01e-14;13!CL:0002159;5.37e-10;14!CL:0002076;5.70e-10;42!CL:0002202;1.59e-09;9!CL:0002632;1.59e-09;9!CL:0002621;1.11e-08;3!CL:0002231;1.96e-08;3!CL:0000307;2.06e-08;3!CL:0000136;2.68e-08;13!CL:0002577;3.54e-08;3!CL:0002615;2.99e-07;3 | |ontology_enrichment_celltype_v019=CL:0002368;7.01e-14;13!CL:0002159;5.37e-10;14!CL:0002076;5.70e-10;42!CL:0002202;1.59e-09;9!CL:0002632;1.59e-09;9!CL:0002621;1.11e-08;3!CL:0002231;1.96e-08;3!CL:0000307;2.06e-08;3!CL:0000136;2.68e-08;13!CL:0002577;3.54e-08;3!CL:0002615;2.99e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002368,3.79e-14,13;CL:0002076,4.49e-13,42;CL:0000223,7.54e-11,58;CL:0002159,5.69e-10,14;CL:0002202,9.56e-10,9;CL:0002632,9.56e-10,9;CL:0002621,1.12e-08,3;CL:0000066,1.61e-08,253;CL:0000068,1.67e-08,3;CL:0000069,1.67e-08,3;CL:0000307,1.67e-08,3;CL:0000377,1.67e-08,3;CL:0002231,1.72e-08,3;CL:0002577,2.09e-08,3;CL:0002615,2.81e-07,3;CL:0000136,4.58e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000377;2.06e-08;3!CL:0000223;6.14e-08;58 | |ontology_enrichment_development_v019=CL:0000377;2.06e-08;3!CL:0000223;6.14e-08;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001949;1.11e-08;3!UBERON:0000486;2.08e-07;12!UBERON:0003937;9.51e-07;12!UBERON:0005399;9.51e-07;12 | |ontology_enrichment_uberon_v019=UBERON:0001949;1.11e-08;3!UBERON:0000486;2.08e-07;12!UBERON:0003937;9.51e-07;12!UBERON:0005399;9.51e-07;12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,8.12e-11,47;UBERON:0001008,1.68e-10,48;UBERON:0003102,1.12e-09,99;UBERON:0001949,1.12e-08,3;UBERON:0003124,1.24e-08,7;UBERON:0004923,2.53e-08,66;UBERON:0004119,5.27e-08,160;UBERON:0000925,5.27e-08,160;UBERON:0006595,5.27e-08,160;UBERON:0005631,1.59e-07,14;UBERON:0000158,1.59e-07,14;UBERON:0002100,2.17e-07,199;UBERON:0009569,6.52e-07,112;UBERON:0003937,8.90e-07,12;UBERON:0005399,8.90e-07,12 | |||
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| ||
|short_description=p@chr1:31907237..31907260,+ | |short_description=p@chr1:31907237..31907260,+ | ||
}} | }} |
Latest revision as of 07:11, 28 July 2015
Short description: | p@chr1:31907237..31907260, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:31907237..31907260, + |
Coexpression cluster: | C3969_Prostate_Keratinocyte_liver_Small_Tracheal_Hepatocyte_Fibroblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 3.79e-14 | 13 |
endo-epithelial cell | 4.49e-13 | 42 |
endodermal cell | 7.54e-11 | 58 |
general ecto-epithelial cell | 5.69e-10 | 14 |
epithelial cell of tracheobronchial tree | 9.56e-10 | 9 |
epithelial cell of lower respiratory tract | 9.56e-10 | 9 |
gingival epithelial cell | 1.12e-08 | 3 |
epithelial cell | 1.61e-08 | 253 |
duct epithelial cell | 1.67e-08 | 3 |
branched duct epithelial cell | 1.67e-08 | 3 |
tracheal epithelial cell | 1.67e-08 | 3 |
tracheoblast | 1.67e-08 | 3 |
epithelial cell of prostate | 1.72e-08 | 3 |
placental epithelial cell | 2.09e-08 | 3 |
adipocyte of omentum tissue | 2.81e-07 | 3 |
fat cell | 4.58e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 8.12e-11 | 47 |
renal system | 1.68e-10 | 48 |
surface structure | 1.12e-09 | 99 |
gingival epithelium | 1.12e-08 | 3 |
chorion | 1.24e-08 | 7 |
organ component layer | 2.53e-08 | 66 |
endoderm-derived structure | 5.27e-08 | 160 |
endoderm | 5.27e-08 | 160 |
presumptive endoderm | 5.27e-08 | 160 |
extraembryonic membrane | 1.59e-07 | 14 |
membranous layer | 1.59e-07 | 14 |
trunk | 2.17e-07 | 199 |
subdivision of trunk | 6.52e-07 | 112 |
sex gland | 8.90e-07 | 12 |
male reproductive gland | 8.90e-07 | 12 |