FFCP PHASE1:Hg19::chr1:224033536..224033567,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:224033536..224033567,-
|short_description=p4@TP53BP2
|description=CAGE_peak_4_at_TP53BP2_5end
|association_with_transcript=-40bp_to_ENST00000472180_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7159 | |EntrezGene=7159 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12000 | |HGNC=12000 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-40bp_to_ENST00000472180_5end | |||
|cluster_id=chr1:224033536..224033567,- | |||
|coexpression_cluster_id=C151 | |||
|description=CAGE_peak_4_at_TP53BP2_5end | |||
|id=chr1:224033536..224033567,- | |||
|ontology_enrichment_celltype=CL:0000988!9.93e-25!182;CL:0000037!2.43e-23!172;CL:0000566!2.43e-23!172;CL:0000766!5.20e-22!76;CL:0000763!9.25e-22!112;CL:0000049!9.25e-22!112;CL:0000738!3.93e-21!140;CL:0002057!5.69e-21!42;CL:0002032!1.44e-20!165;CL:0000837!1.44e-20!165;CL:0000557!5.46e-19!71;CL:0000860!8.79e-19!45;CL:0000839!3.52e-17!70;CL:0002031!3.77e-16!124;CL:0002009!6.32e-16!65;CL:0002194!3.29e-15!63;CL:0000576!3.29e-15!63;CL:0000040!3.29e-15!63;CL:0000559!3.29e-15!63;CL:0002087!1.28e-14!119;CL:0000081!7.87e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.95e-16;33!CL:0002057;2.95e-16;33!CL:0000576;1.62e-14;48!CL:0000766;3.58e-12;69!CL:0000473;4.11e-11;39!CL:0000234;4.11e-11;39!CL:0000763;1.30e-08;100!CL:0002087;1.22e-07;104!CL:0000081;1.42e-07;11!CL:0000094;1.58e-07;8!CL:0000738;7.72e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.03e-30,177;CL:0000037,9.45e-29,168;CL:0000766,5.32e-28,72;CL:0000738,2.63e-27,136;CL:0000763,9.05e-26,108;CL:0000049,9.05e-26,108;CL:0002032,1.37e-25,161;CL:0000837,1.37e-25,161;CL:0000860,5.75e-25,42;CL:0002057,5.75e-25,42;CL:0000557,5.42e-24,67;CL:0000839,6.21e-21,66;CL:0000473,8.52e-21,48;CL:0000234,8.52e-21,48;CL:0002031,1.22e-20,120;CL:0002009,6.22e-20,61;CL:0002087,3.20e-19,115;CL:0002194,5.49e-19,59;CL:0000576,5.49e-19,59;CL:0000040,5.49e-19,59;CL:0000559,5.49e-19,59;CL:0002393,3.24e-08,9;CL:0002397,3.24e-08,9;CL:0000081,1.24e-07,11;CL:0000094,1.30e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.08e-17;42!CL:0000049;8.97e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!6.30e-16!86;UBERON:0002371!6.51e-16!80;UBERON:0002390!1.36e-15!102;UBERON:0003061!1.36e-15!102;UBERON:0004765!1.74e-13!101;UBERON:0001434!1.74e-13!101;UBERON:0002193!7.60e-13!112;UBERON:0002405!8.82e-09!115;UBERON:0000073!1.58e-08!94;UBERON:0001016!1.58e-08!94;UBERON:0005743!4.51e-08!86;UBERON:0001017!1.29e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.74e-20,76;UBERON:0001474,1.67e-19,82;UBERON:0002390,1.55e-17,98;UBERON:0003061,1.55e-17,98;UBERON:0004765,1.62e-16,90;UBERON:0002193,1.06e-13,108;UBERON:0002405,2.14e-13,93;UBERON:0001434,2.25e-13,100;UBERON:0001016,4.60e-10,89;UBERON:0001017,4.57e-09,81;UBERON:0001049,2.34e-07,56;UBERON:0005068,2.34e-07,56;UBERON:0006241,2.34e-07,56;UBERON:0007135,2.34e-07,56;UBERON:0000073,8.84e-07,53;UBERON:0002616,8.84e-07,53 | |||
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| ||
|short_description=p4@TP53BP2 | |||
}} | }} |
Latest revision as of 22:55, 15 September 2015
Short description: | p4@TP53BP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TP53BP2_5end |
Coexpression cluster: | C151_CD14_Natural_Basophils_CD8_Eosinophils_CD4_Mast |
Association with transcript: | -40bp_to_ENST00000472180_5end |
EntrezGene: | TP53BP2 |
HGNC: | 12000 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.03e-30 | 177 |
hematopoietic stem cell | 9.45e-29 | 168 |
myeloid leukocyte | 5.32e-28 | 72 |
leukocyte | 2.63e-27 | 136 |
myeloid cell | 9.05e-26 | 108 |
common myeloid progenitor | 9.05e-26 | 108 |
hematopoietic oligopotent progenitor cell | 1.37e-25 | 161 |
hematopoietic multipotent progenitor cell | 1.37e-25 | 161 |
classical monocyte | 5.75e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.75e-25 | 42 |
granulocyte monocyte progenitor cell | 5.42e-24 | 67 |
myeloid lineage restricted progenitor cell | 6.21e-21 | 66 |
defensive cell | 8.52e-21 | 48 |
phagocyte | 8.52e-21 | 48 |
hematopoietic lineage restricted progenitor cell | 1.22e-20 | 120 |
macrophage dendritic cell progenitor | 6.22e-20 | 61 |
nongranular leukocyte | 3.20e-19 | 115 |
monopoietic cell | 5.49e-19 | 59 |
monocyte | 5.49e-19 | 59 |
monoblast | 5.49e-19 | 59 |
promonocyte | 5.49e-19 | 59 |
intermediate monocyte | 3.24e-08 | 9 |
CD14-positive, CD16-positive monocyte | 3.24e-08 | 9 |
blood cell | 1.24e-07 | 11 |
granulocyte | 1.30e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.74e-20 | 76 |
bone element | 1.67e-19 | 82 |
hematopoietic system | 1.55e-17 | 98 |
blood island | 1.55e-17 | 98 |
skeletal element | 1.62e-16 | 90 |
hemolymphoid system | 1.06e-13 | 108 |
immune system | 2.14e-13 | 93 |
skeletal system | 2.25e-13 | 100 |
nervous system | 4.60e-10 | 89 |
central nervous system | 4.57e-09 | 81 |
neural tube | 2.34e-07 | 56 |
neural rod | 2.34e-07 | 56 |
future spinal cord | 2.34e-07 | 56 |
neural keel | 2.34e-07 | 56 |
regional part of nervous system | 8.84e-07 | 53 |
regional part of brain | 8.84e-07 | 53 |