FFCP PHASE1:Hg19::chr13:19755975..19755996,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=113457,7278 | |EntrezGene=113457,7278 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12408,24071 | |HGNC=12408,24071 | ||
|TSSclassifier=strong | |||
|UniProt=Q13748,Q1ZYQ1 | |UniProt=Q13748,Q1ZYQ1 | ||
|association_with_transcript=0bp_to_ENST00000400113,NM_006001_5end | |association_with_transcript=0bp_to_ENST00000400113,NM_006001_5end | ||
|cluster_id=chr13:19755975..19755996,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_3_at_TUBA3C_5end,CAGE_peak_3_at_TUBA3D_5end | |description=CAGE_peak_3_at_TUBA3C_5end,CAGE_peak_3_at_TUBA3D_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000054;3.24e-12;2!CL:0000137;3.24e-12;2!CL:0000092;3.24e-12;2 | |ontology_enrichment_celltype_v019=CL:0000054;3.24e-12;2!CL:0000137;3.24e-12;2!CL:0000092;3.24e-12;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000054,2.90e-12,2;CL:0000137,2.90e-12,2;CL:0000092,2.90e-12,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10 | |ontology_enrichment_development_v019=UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10 | ||
|ontology_enrichment_disease=DOID:0060085!6.31e-10!1;DOID:3165!6.31e-10!1;DOID:0060121!6.31e-10!1;DOID:2438!6.31e-10!1;DOID:4418!6.31e-10!1 | |ontology_enrichment_disease=DOID:0060085!6.31e-10!1;DOID:3165!6.31e-10!1;DOID:0060121!6.31e-10!1;DOID:2438!6.31e-10!1;DOID:4418!6.31e-10!1 | ||
|ontology_enrichment_disease_v019=DOID:0060085;5.13e-23;1!DOID:3165;5.13e-23;1!DOID:0060121;5.13e-23;1!DOID:2438;5.13e-23;1!DOID:4418;5.13e-23;1!DOID:200;3.24e-12;2!DOID:4305;3.24e-12;2!DOID:0060072;9.63e-07;4!DOID:5409;9.63e-07;4 | |ontology_enrichment_disease_v019=DOID:0060085;5.13e-23;1!DOID:3165;5.13e-23;1!DOID:0060121;5.13e-23;1!DOID:2438;5.13e-23;1!DOID:4418;5.13e-23;1!DOID:200;3.24e-12;2!DOID:4305;3.24e-12;2!DOID:0060072;9.63e-07;4!DOID:5409;9.63e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:0060085,4.10e-23,1;DOID:3165,4.10e-23,1;DOID:0060121,4.10e-23,1;DOID:2438,4.10e-23,1;DOID:4418,4.10e-23,1;DOID:200,2.90e-12,2;DOID:4305,2.90e-12,2;DOID:0060072,9.11e-07,4;DOID:5409,9.63e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001282!8.91e-10!1;UBERON:0009842!8.91e-10!1;UBERON:0003704!8.91e-10!1;UBERON:0001171!8.91e-10!1;UBERON:0001172!8.91e-10!1;UBERON:0001301!1.62e-09!1;UBERON:0003135!1.50e-07!11 | |ontology_enrichment_uberon=UBERON:0001282!8.91e-10!1;UBERON:0009842!8.91e-10!1;UBERON:0003704!8.91e-10!1;UBERON:0001171!8.91e-10!1;UBERON:0001172!8.91e-10!1;UBERON:0001301!1.62e-09!1;UBERON:0003135!1.50e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11!UBERON:0000014;9.63e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000473;3.54e-12;8!UBERON:0003135;4.08e-09;11!UBERON:0000014;9.63e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.54e-12,8;UBERON:0003135,4.08e-09,11;UBERON:0000014,9.11e-07,4 | |||
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|short_description=p3@TUBA3C,p3@TUBA3D | |short_description=p3@TUBA3C,p3@TUBA3D | ||
}} | }} |
Latest revision as of 18:00, 16 September 2015
Short description: | p3@TUBA3C, p3@TUBA3D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TUBA3C_5end, CAGE_peak_3_at_TUBA3D_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000400113, NM_006001_5end |
EntrezGene: | 113457,7278 |
HGNC: | 24071&submit=Submit 12408, 24071 |
UniProt: | Q13748Q1ZYQ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 2.90e-12 | 2 |
osteocyte | 2.90e-12 | 2 |
osteoclast | 2.90e-12 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 3.54e-12 | 8 |
male reproductive organ | 4.08e-09 | 11 |
zone of skin | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 4.10e-23 | 1 |
skin benign neoplasm | 4.10e-23 | 1 |
integumentary system benign neoplasm | 4.10e-23 | 1 |
dermis tumor | 4.10e-23 | 1 |
cutaneous fibrous histiocytoma | 4.10e-23 | 1 |
giant cell tumor | 2.90e-12 | 2 |
bone giant cell tumor | 2.90e-12 | 2 |
benign neoplasm | 9.11e-07 | 4 |
lung small cell carcinoma | 9.63e-07 | 4 |