FFCP PHASE1:Hg19::chr1:79101668..79101671,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:79101668..79101671,+ | |||
|coexpression_cluster_id=C2600 | |coexpression_cluster_id=C2600 | ||
|description=CAGE_peak_at_chr1:79101668..79101671,+ | |description=CAGE_peak_at_chr1:79101668..79101671,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!1.30e-16!42;CL:0000860!6.90e-15!45;CL:0002087!2.53e-11!119;CL:0000738!3.68e-11!140;CL:0002194!4.36e-11!63;CL:0000576!4.36e-11!63;CL:0000040!4.36e-11!63;CL:0000559!4.36e-11!63;CL:0000766!1.44e-10!76;CL:0000839!1.61e-10!70;CL:0002009!1.82e-10!65;CL:0000557!3.07e-10!71;CL:0002031!4.86e-10!124;CL:0000037!1.82e-07!172;CL:0000566!1.82e-07!172;CL:0000988!8.87e-07!182 | |ontology_enrichment_celltype=CL:0002057!1.30e-16!42;CL:0000860!6.90e-15!45;CL:0002087!2.53e-11!119;CL:0000738!3.68e-11!140;CL:0002194!4.36e-11!63;CL:0000576!4.36e-11!63;CL:0000040!4.36e-11!63;CL:0000559!4.36e-11!63;CL:0000766!1.44e-10!76;CL:0000839!1.61e-10!70;CL:0002009!1.82e-10!65;CL:0000557!3.07e-10!71;CL:0002031!4.86e-10!124;CL:0000037!1.82e-07!172;CL:0000566!1.82e-07!172;CL:0000988!8.87e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.98e-25;33!CL:0002057;7.98e-25;33!CL:0000473;3.55e-17;39!CL:0000234;3.55e-17;39!CL:0000576;7.22e-13;48!CL:0000945;2.89e-10;24!CL:0002087;7.69e-08;104!CL:0000946;4.85e-07;1!CL:0000786;4.85e-07;1 | |ontology_enrichment_celltype_v019=CL:0000860;7.98e-25;33!CL:0002057;7.98e-25;33!CL:0000473;3.55e-17;39!CL:0000234;3.55e-17;39!CL:0000576;7.22e-13;48!CL:0000945;2.89e-10;24!CL:0002087;7.69e-08;104!CL:0000946;4.85e-07;1!CL:0000786;4.85e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.64e-22,42;CL:0002057,3.64e-22,42;CL:0000473,5.10e-19,48;CL:0000234,5.10e-19,48;CL:0002087,7.18e-16,115;CL:0002031,5.06e-15,120;CL:0002194,1.28e-14,59;CL:0000576,1.28e-14,59;CL:0000040,1.28e-14,59;CL:0000559,1.28e-14,59;CL:0000738,3.05e-14,136;CL:0002009,4.73e-14,61;CL:0000839,8.78e-13,66;CL:0000557,1.50e-12,67;CL:0000037,7.26e-12,168;CL:0000766,1.72e-11,72;CL:0002032,2.84e-11,161;CL:0000837,2.84e-11,161;CL:0000988,5.17e-11,177;CL:0000945,2.94e-10,24;CL:0000826,2.94e-10,24;CL:0000763,6.59e-08,108;CL:0000049,6.59e-08,108;CL:0000946,4.85e-07,1;CL:0000786,4.85e-07,1;CL:0000980,4.85e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002057;6.52e-15;42 | |ontology_enrichment_development_v019=CL:0002057;6.52e-15;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:630;4.58e-07;1!DOID:0050177;4.58e-07;1!DOID:0050427;4.58e-07;1 | |ontology_enrichment_disease_v019=DOID:630;4.58e-07;1!DOID:0050177;4.58e-07;1!DOID:0050427;4.58e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:630,4.58e-07,1;DOID:0050177,4.58e-07,1;DOID:0050427,4.58e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!5.16e-10!102;UBERON:0003061!5.16e-10!102;UBERON:0002371!1.05e-09!80;UBERON:0001474!2.33e-08!86;UBERON:0002193!4.06e-08!112;UBERON:0004765!2.07e-07!101;UBERON:0001434!2.07e-07!101 | |ontology_enrichment_uberon=UBERON:0002390!5.16e-10!102;UBERON:0003061!5.16e-10!102;UBERON:0002371!1.05e-09!80;UBERON:0001474!2.33e-08!86;UBERON:0002193!4.06e-08!112;UBERON:0004765!2.07e-07!101;UBERON:0001434!2.07e-07!101 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.89e-12,76;UBERON:0002390,7.77e-12,98;UBERON:0003061,7.77e-12,98;UBERON:0001474,2.55e-11,82;UBERON:0002405,4.27e-11,93;UBERON:0002193,2.04e-10,108;UBERON:0004765,4.76e-10,90;UBERON:0001434,9.54e-09,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,3.51501666440576,2.29881650459848,2.04648031415566,0.393364276848904,0.383829398097213,0,0,0,0,0.46480320348181,0,0,0,0.200544447470142,0.217010870715852,0.223915474239924,0,0,0,0.377875943688809,0.242584061187816,0,0,0,2.3015391385772,0.512321413058201,0.945928919554341,0,0.645484683583826,0,0.376484679085209,0,0,2.44867113896722,0.962787081228281,2.55734850319616,2.96866170168044,2.39356389145958,2.13112375266347,3.19230162491442,1.13477044938228,2.4912889959823,1.00499466102697,3.65038042894141,0.65156653411535,10.2917915447673,2.57794345191295,3.16462387440884,0,0,0.209658645508376,0.22465726229299,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0.393010762749165,0.411202997999018,0,0,0,0,0,0,0.221533894583621,0,0.25618263945135,0.130059347559878,1.47994114143309,0.276350017785848,0,0.14828656316206,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.189069634328136,0,0.087834785693126,0.0654895377488563,0,0,0,0,0.132957960518865,0,3.43196946468077,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0,0,0,0,0,0.45071417671979,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.234004265139238,0,0,0,0.283550194484773,0,0,0,0,0.176096868026452,0,0,0.12624243342638,0,0,0,0,0,0,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.821905290201534,0,0,0,0.215627574859517,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0.173767228936166,0.391602314925481,0,0.620304078368662,0.862856803274467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.462145851343933,0,0.137836572484531,0.322260734604821,0.290033387828457,0.426133137080504,0,0,0,0,0,0,0,0,0,0,0,0,0,1.116475108079,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,1.70599442741899,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13929437434833,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0.222886768554957,0,0,0,0,0,0,0.556543525114529,0,0,0.19924798825107,0.552567831062295,0,0,2.8309505256046,0,0,0.895105873378046,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0.32681539055697,0,0,0,0,0,0,0,0,1.06606955203727,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,1.20990716048664,0,0.379119477770928,0,0,0,0,0,0,1.13843818411917,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,0.0633107959558787,8.01760669212692,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916641696046735,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0.0846733320657845,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,1.16160370171347,0.35857467866569,0,0,0,0,0,0,0,0,2.38068310173083,0,0,0,0,0,0,0,0,0,0,0.828478110694391,0,0,0,1.91502377331055,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0,0,0,0,0,2.35265819698172,0,0,0,0,0,0,0,0.889811221596536,0,0,0.310874401165561,0,0,0,0,0.414706207840855,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.857766365499703,0.260994291965212,0,0,4.16052397660995,0,0,0,0,0,0.506827321959218,0,0,0.911579868532147,0,0,0,0.163565394255844,1.63804924423206,0.491545817507439,0,0,0,1.54993481694734,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0.733714394086716,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,1.48863353516788,0,0.127762427639595,0,0,0,0,0.177404740325278,5.07029545245429,0,0.0679697329768317,0.0657727735628491,0,0.111231401892069,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.392616934229891,0,0,0,0.281951753939561,0,1.59905849479886,0.71421575442263,0,0.0802413666891683,0.730336388246517,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0.103432995861895,0.426467963801962,0,0.0645889098360061,0.31037357147929,0.112131862580613,0.0636471582781649,0.404234377916439,0.217716747896961,0,0,0.0717222053926763,0,0,0.213454691755431,0,0.179650404213174,0,0,0,0,0.201273793591026,7.37307532297436 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,3.51501666440576,2.29881650459848,2.04648031415566,0.393364276848904,0.383829398097213,0,0,0,0,0.46480320348181,0,0,0,0.200544447470142,0.217010870715852,0.223915474239924,0,0,0,0.377875943688809,0.242584061187816,0,0,0,2.3015391385772,0.512321413058201,0.945928919554341,0,0.645484683583826,0,0.376484679085209,0,0,2.44867113896722,0.962787081228281,2.55734850319616,2.96866170168044,2.39356389145958,2.13112375266347,3.19230162491442,1.13477044938228,2.4912889959823,1.00499466102697,3.65038042894141,0.65156653411535,10.2917915447673,2.57794345191295,3.16462387440884,0,0,0.209658645508376,0.22465726229299,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0.393010762749165,0.411202997999018,0,0,0,0,0,0,0.221533894583621,0,0.25618263945135,0.130059347559878,1.47994114143309,0.276350017785848,0,0.14828656316206,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.189069634328136,0,0.087834785693126,0.0654895377488563,0,0,0,0,0.132957960518865,0,3.43196946468077,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0,0,0,0,0,0.45071417671979,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.234004265139238,0,0,0,0.283550194484773,0,0,0,0,0.176096868026452,0,0,0.12624243342638,0,0,0,0,0,0,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.821905290201534,0,0,0,0.215627574859517,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0.173767228936166,0.391602314925481,0,0.620304078368662,0.862856803274467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0.462145851343933,0,0.137836572484531,0.322260734604821,0.290033387828457,0.426133137080504,0,0,0,0,0,0,0,0,0,0,0,0,0,1.116475108079,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,1.70599442741899,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13929437434833,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0.222886768554957,0,0,0,0,0,0,0.556543525114529,0,0,0.19924798825107,0.552567831062295,0,0,2.8309505256046,0,0,0.895105873378046,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0.32681539055697,0,0,0,0,0,0,0,0,1.06606955203727,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,1.20990716048664,0,0.379119477770928,0,0,0,0,0,0,1.13843818411917,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,0.0633107959558787,8.01760669212692,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916641696046735,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0.0846733320657845,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,1.16160370171347,0.35857467866569,0,0,0,0,0,0,0,0,2.38068310173083,0,0,0,0,0,0,0,0,0,0,0.828478110694391,0,0,0,1.91502377331055,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0,0,0,0,0,2.35265819698172,0,0,0,0,0,0,0,0.889811221596536,0,0,0.310874401165561,0,0,0,0,0.414706207840855,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.857766365499703,0.260994291965212,0,0,4.16052397660995,0,0,0,0,0,0.506827321959218,0,0,0.911579868532147,0,0,0,0.163565394255844,1.63804924423206,0.491545817507439,0,0,0,1.54993481694734,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0.733714394086716,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,1.48863353516788,0,0.127762427639595,0,0,0,0,0.177404740325278,5.07029545245429,0,0.0679697329768317,0.0657727735628491,0,0.111231401892069,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.392616934229891,0,0,0,0.281951753939561,0,1.59905849479886,0.71421575442263,0,0.0802413666891683,0.730336388246517,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0.103432995861895,0.426467963801962,0,0.0645889098360061,0.31037357147929,0.112131862580613,0.0636471582781649,0.404234377916439,0.217716747896961,0,0,0.0717222053926763,0,0,0.213454691755431,0,0.179650404213174,0,0,0,0,0.201273793591026,7.37307532297436 | ||
|short_description=p@chr1:79101668..79101671,+ | |short_description=p@chr1:79101668..79101671,+ | ||
}} | }} |
Latest revision as of 10:32, 28 July 2015
Short description: | p@chr1:79101668..79101671, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:79101668..79101671, + |
Coexpression cluster: | C2600_Dendritic_xeroderma_Smooth_gall_B_CD14_plasma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.64e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.64e-22 | 42 |
defensive cell | 5.10e-19 | 48 |
phagocyte | 5.10e-19 | 48 |
nongranular leukocyte | 7.18e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 5.06e-15 | 120 |
monopoietic cell | 1.28e-14 | 59 |
monocyte | 1.28e-14 | 59 |
monoblast | 1.28e-14 | 59 |
promonocyte | 1.28e-14 | 59 |
leukocyte | 3.05e-14 | 136 |
macrophage dendritic cell progenitor | 4.73e-14 | 61 |
myeloid lineage restricted progenitor cell | 8.78e-13 | 66 |
granulocyte monocyte progenitor cell | 1.50e-12 | 67 |
hematopoietic stem cell | 7.26e-12 | 168 |
myeloid leukocyte | 1.72e-11 | 72 |
hematopoietic oligopotent progenitor cell | 2.84e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.84e-11 | 161 |
hematopoietic cell | 5.17e-11 | 177 |
lymphocyte of B lineage | 2.94e-10 | 24 |
pro-B cell | 2.94e-10 | 24 |
myeloid cell | 6.59e-08 | 108 |
common myeloid progenitor | 6.59e-08 | 108 |
antibody secreting cell | 4.85e-07 | 1 |
plasma cell | 4.85e-07 | 1 |
plasmablast | 4.85e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.89e-12 | 76 |
hematopoietic system | 7.77e-12 | 98 |
blood island | 7.77e-12 | 98 |
bone element | 2.55e-11 | 82 |
immune system | 4.27e-11 | 93 |
hemolymphoid system | 2.04e-10 | 108 |
skeletal element | 4.76e-10 | 90 |
skeletal system | 9.54e-09 | 100 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 4.58e-07 | 1 |
monogenic disease | 4.58e-07 | 1 |
xeroderma pigmentosum | 4.58e-07 | 1 |