FFCP PHASE1:Hg19::chr2:21231103..21231113,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=338 | |EntrezGene=338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=603 | |HGNC=603 | ||
|TSSclassifier=strong | |||
|UniProt=Q59HB3 | |UniProt=Q59HB3 | ||
|association_with_transcript=-206bp_to_AB208846_5end | |association_with_transcript=-206bp_to_AB208846_5end | ||
|cluster_id=chr2:21231103..21231113,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_48_at_APOB_5end | |description=CAGE_peak_48_at_APOB_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000181!5.09e-30!12;CL:0000417!5.09e-30!12;CL:0000668!5.09e-30!12;CL:0000414!5.09e-30!12;CL:0000412!5.09e-30!12;CL:0000182!5.09e-30!12;CL:0000223!1.10e-07!59 | |ontology_enrichment_celltype=CL:0000181!5.09e-30!12;CL:0000417!5.09e-30!12;CL:0000668!5.09e-30!12;CL:0000414!5.09e-30!12;CL:0000412!5.09e-30!12;CL:0000182!5.09e-30!12;CL:0000223!1.10e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.25e-34;12!CL:0000047;1.64e-09;2 | |ontology_enrichment_celltype_v019=CL:0000182;1.25e-34;12!CL:0000047;1.64e-09;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.44e-34,12;CL:0000223,3.29e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.69e-24;11!UBERON:0009497;1.25e-20;13!UBERON:0001041;3.91e-09;30!UBERON:0003104;8.93e-09;31 | |ontology_enrichment_development_v019=UBERON:0004161;2.69e-24;11!UBERON:0009497;1.25e-20;13!UBERON:0001041;3.91e-09;30!UBERON:0003104;8.93e-09;31 | ||
|ontology_enrichment_disease=DOID:178!5.43e-11!1;DOID:326!5.43e-11!1;DOID:3978!5.43e-11!1;DOID:3394!5.43e-11!1;DOID:5844!5.43e-11!1 | |ontology_enrichment_disease=DOID:178!5.43e-11!1;DOID:326!5.43e-11!1;DOID:3978!5.43e-11!1;DOID:3394!5.43e-11!1;DOID:5844!5.43e-11!1 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!3.03e-33!19;UBERON:0006925!3.03e-33!19;UBERON:0008836!3.03e-33!19;UBERON:0008835!1.34e-28!22;UBERON:0003894!1.34e-28!22;UBERON:0009854!2.56e-27!23;UBERON:0007499!4.59e-25!25;UBERON:0009497!4.59e-25!25;UBERON:0000015!4.59e-25!25;UBERON:0002423!4.59e-25!25;UBERON:0006235!4.59e-25!25;UBERON:0004161!4.59e-25!25;UBERON:0005057!4.57e-24!26;UBERON:0009856!4.57e-24!26;UBERON:0002365!4.83e-20!31;UBERON:0002330!4.83e-20!31;UBERON:0002368!1.20e-17!35;UBERON:0003929!5.67e-14!54;UBERON:0000949!1.62e-13!45;UBERON:0004921!6.25e-13!129;UBERON:0004185!6.25e-13!129;UBERON:0000160!3.03e-12!27;UBERON:0005172!6.93e-11!55;UBERON:0005173!6.93e-11!55;UBERON:0001007!2.09e-10!155;UBERON:0001555!2.09e-10!155;UBERON:0007026!2.09e-10!155;UBERON:0002530!4.42e-10!59;UBERON:0002417!1.02e-09!61;UBERON:0000916!1.02e-09!61;UBERON:0005409!1.96e-09!35;UBERON:0004119!2.29e-09!169;UBERON:0000925!2.29e-09!169;UBERON:0006595!2.29e-09!169;UBERON:0005911!8.69e-09!82 | |ontology_enrichment_uberon=UBERON:0002107!3.03e-33!19;UBERON:0006925!3.03e-33!19;UBERON:0008836!3.03e-33!19;UBERON:0008835!1.34e-28!22;UBERON:0003894!1.34e-28!22;UBERON:0009854!2.56e-27!23;UBERON:0007499!4.59e-25!25;UBERON:0009497!4.59e-25!25;UBERON:0000015!4.59e-25!25;UBERON:0002423!4.59e-25!25;UBERON:0006235!4.59e-25!25;UBERON:0004161!4.59e-25!25;UBERON:0005057!4.57e-24!26;UBERON:0009856!4.57e-24!26;UBERON:0002365!4.83e-20!31;UBERON:0002330!4.83e-20!31;UBERON:0002368!1.20e-17!35;UBERON:0003929!5.67e-14!54;UBERON:0000949!1.62e-13!45;UBERON:0004921!6.25e-13!129;UBERON:0004185!6.25e-13!129;UBERON:0000160!3.03e-12!27;UBERON:0005172!6.93e-11!55;UBERON:0005173!6.93e-11!55;UBERON:0001007!2.09e-10!155;UBERON:0001555!2.09e-10!155;UBERON:0007026!2.09e-10!155;UBERON:0002530!4.42e-10!59;UBERON:0002417!1.02e-09!61;UBERON:0000916!1.02e-09!61;UBERON:0005409!1.96e-09!35;UBERON:0004119!2.29e-09!169;UBERON:0000925!2.29e-09!169;UBERON:0006595!2.29e-09!169;UBERON:0005911!8.69e-09!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.24e-42;19!UBERON:0006925;2.24e-42;19!UBERON:0002423;3.62e-32;25!UBERON:0002365;1.08e-24;31!UBERON:0002330;1.08e-24;31!UBERON:0002368;1.04e-22;33!UBERON:0000949;4.03e-16;43!UBERON:0005172;1.67e-10;52!UBERON:0005173;1.67e-10;52!UBERON:0002417;1.67e-08;58!UBERON:0000916;1.67e-08;58!UBERON:0002530;2.36e-08;57!UBERON:0001007;3.72e-08;81!UBERON:0002114;9.37e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0002107;2.24e-42;19!UBERON:0006925;2.24e-42;19!UBERON:0002423;3.62e-32;25!UBERON:0002365;1.08e-24;31!UBERON:0002330;1.08e-24;31!UBERON:0002368;1.04e-22;33!UBERON:0000949;4.03e-16;43!UBERON:0005172;1.67e-10;52!UBERON:0005173;1.67e-10;52!UBERON:0002417;1.67e-08;58!UBERON:0000916;1.67e-08;58!UBERON:0002530;2.36e-08;57!UBERON:0001007;3.72e-08;81!UBERON:0002114;9.37e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.46e-42,19;UBERON:0006925,2.46e-42,19;UBERON:0008836,2.46e-42,19;UBERON:0008835,1.53e-36,22;UBERON:0003894,1.53e-36,22;UBERON:0009854,6.02e-35,23;UBERON:0007499,3.89e-32,25;UBERON:0009497,3.89e-32,25;UBERON:0000015,3.89e-32,25;UBERON:0002423,3.89e-32,25;UBERON:0006235,3.89e-32,25;UBERON:0004161,3.89e-32,25;UBERON:0009856,6.81e-31,26;UBERON:0002365,7.10e-26,31;UBERON:0002330,7.10e-26,31;UBERON:0002368,6.86e-23,35;UBERON:0000949,9.71e-18,45;UBERON:0003929,9.99e-15,54;UBERON:0005172,9.99e-15,54;UBERON:0005173,9.99e-15,54;UBERON:0002530,1.90e-13,59;UBERON:0002417,3.22e-13,60;UBERON:0000916,3.22e-13,60;UBERON:0005911,1.46e-09,82;UBERON:0001041,5.49e-09,87;UBERON:0004921,2.24e-08,118;UBERON:0005177,1.12e-07,101;UBERON:0009569,7.11e-07,112;UBERON:0002114,8.15e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,5.89696330006576,7.68026878685825,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47298427954533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.945398187686684,1.40106959247983,1.01105315781277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4913879725274,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926089897295336,0.874238242015829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.7457048750563,5.89696330006576,7.68026878685825,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.47298427954533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.945398187686684,1.40106959247983,1.01105315781277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4913879725274,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926089897295336,0.874238242015829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p48@APOB | |short_description=p48@APOB | ||
}} | }} |
Latest revision as of 23:11, 19 September 2015
Short description: | p48@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_48_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -206bp_to_AB208846_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | Q59HB3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.44e-34 | 12 |
endodermal cell | 3.29e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 2.46e-42 | 19 |
digestive gland | 2.46e-42 | 19 |
liver bud | 2.46e-42 | 19 |
hepatic diverticulum | 1.53e-36 | 22 |
liver primordium | 1.53e-36 | 22 |
digestive tract diverticulum | 6.02e-35 | 23 |
epithelial sac | 3.89e-32 | 25 |
epithelium of foregut-midgut junction | 3.89e-32 | 25 |
anatomical boundary | 3.89e-32 | 25 |
hepatobiliary system | 3.89e-32 | 25 |
foregut-midgut junction | 3.89e-32 | 25 |
septum transversum | 3.89e-32 | 25 |
sac | 6.81e-31 | 26 |
exocrine gland | 7.10e-26 | 31 |
exocrine system | 7.10e-26 | 31 |
endocrine gland | 6.86e-23 | 35 |
endocrine system | 9.71e-18 | 45 |
gut epithelium | 9.99e-15 | 54 |
abdomen element | 9.99e-15 | 54 |
abdominal segment element | 9.99e-15 | 54 |
gland | 1.90e-13 | 59 |
abdominal segment of trunk | 3.22e-13 | 60 |
abdomen | 3.22e-13 | 60 |
endo-epithelium | 1.46e-09 | 82 |
foregut | 5.49e-09 | 87 |
subdivision of digestive tract | 2.24e-08 | 118 |
trunk region element | 1.12e-07 | 101 |
subdivision of trunk | 7.11e-07 | 112 |
duodenum | 8.15e-07 | 2 |