FFCP PHASE1:Hg19::chr14:60194347..60194365,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6252 | |EntrezGene=6252 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10467 | |HGNC=10467 | ||
|TSSclassifier=strong | |||
|UniProt=Q16799 | |UniProt=Q16799 | ||
|association_with_transcript=65bp_to_ENST00000432103,uc001xem.1_5end | |association_with_transcript=65bp_to_ENST00000432103,uc001xem.1_5end | ||
|cluster_id=chr14:60194347..60194365,- | |||
|coexpression_cluster_id=C89 | |coexpression_cluster_id=C89 | ||
|description=CAGE_peak_17_at_RTN1_5end | |description=CAGE_peak_17_at_RTN1_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |ontology_enrichment_disease_v019=DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,2.53e-11,4;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
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|short_description=p17@RTN1 | |short_description=p17@RTN1 | ||
}} | }} |
Latest revision as of 20:03, 24 September 2015
Short description: | p17@RTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_RTN1_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | 65bp_to_ENST00000432103, uc001xem.1_5end |
EntrezGene: | RTN1 |
HGNC: | 10467 |
UniProt: | Q16799 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 1.31e-30 | 20 |
regional part of cerebral cortex | 5.02e-28 | 22 |
gyrus | 2.38e-27 | 6 |
cerebral cortex | 6.80e-25 | 25 |
pallium | 6.80e-25 | 25 |
temporal lobe | 1.61e-23 | 6 |
middle frontal gyrus | 3.81e-21 | 2 |
middle temporal gyrus | 4.66e-21 | 2 |
amygdala | 5.70e-21 | 2 |
regional part of telencephalon | 8.59e-20 | 32 |
cerebral hemisphere | 8.59e-20 | 32 |
brain grey matter | 1.04e-18 | 34 |
gray matter | 1.04e-18 | 34 |
telencephalon | 1.04e-18 | 34 |
regional part of forebrain | 1.01e-15 | 41 |
forebrain | 1.01e-15 | 41 |
anterior neural tube | 1.01e-15 | 41 |
future forebrain | 1.01e-15 | 41 |
frontal cortex | 1.40e-14 | 3 |
regional part of nervous system | 2.17e-12 | 53 |
regional part of brain | 2.17e-12 | 53 |
neural tube | 8.95e-12 | 56 |
neural rod | 8.95e-12 | 56 |
future spinal cord | 8.95e-12 | 56 |
neural keel | 8.95e-12 | 56 |
pre-chordal neural plate | 7.02e-11 | 61 |
brain | 1.03e-09 | 68 |
future brain | 1.03e-09 | 68 |
limbic system | 3.22e-09 | 5 |
occipital lobe | 3.49e-09 | 5 |
central nervous system | 2.75e-08 | 81 |
neural plate | 2.75e-08 | 82 |
presumptive neural plate | 2.75e-08 | 82 |
neurectoderm | 6.20e-08 | 86 |
nervous system | 1.56e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.53e-11 | 4 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |