FFCP PHASE1:Hg19::chr3:146870027..146870031,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:146870027..146870031,- | |||
|coexpression_cluster_id=C1079 | |coexpression_cluster_id=C1079 | ||
|description=CAGE_peak_at_chr3:146870027..146870031,- | |description=CAGE_peak_at_chr3:146870027..146870031,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002603!5.51e-12!3 | |ontology_enrichment_celltype=CL:0002603!5.51e-12!3 | ||
|ontology_enrichment_celltype_v019=CL:0000214;1.04e-08;3!CL:0002590;1.30e-08;3 | |ontology_enrichment_celltype_v019=CL:0000214;1.04e-08;3!CL:0002590;1.30e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000214,1.04e-08,3;CL:0002590,1.12e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.67e-30;3 | |ontology_enrichment_development_v019=UBERON:0006215;2.67e-30;3 | ||
|ontology_enrichment_disease=DOID:1036!3.42e-07!8 | |ontology_enrichment_disease=DOID:1036!3.42e-07!8 | ||
|ontology_enrichment_disease_v019=DOID:5409;5.14e-23;4!DOID:1325;1.31e-13;7!DOID:3904;1.31e-13;7!DOID:3905;8.36e-11;9!DOID:1324;7.63e-07;15 | |ontology_enrichment_disease_v019=DOID:5409;5.14e-23;4!DOID:1325;1.31e-13;7!DOID:3904;1.31e-13;7!DOID:3905;8.36e-11;9!DOID:1324;7.63e-07;15 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,5.14e-23,4;DOID:1325,1.31e-13,7;DOID:3904,1.31e-13,7;DOID:3905,8.37e-11,9;DOID:1324,7.63e-07,15 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002037;1.05e-15;6!UBERON:0002680;8.36e-11;9!UBERON:0001895;8.36e-11;9!UBERON:0002369;8.96e-09;3!UBERON:0001235;8.96e-09;3!UBERON:0006858;8.96e-09;3!UBERON:0006915;1.04e-08;3!UBERON:0007616;1.04e-08;3!UBERON:0002217;1.04e-08;3!UBERON:0002018;1.04e-08;3!UBERON:0002114;1.30e-08;2!UBERON:0004733;2.46e-08;12!UBERON:0002028;2.46e-08;12!UBERON:0004732;9.20e-08;13 | |ontology_enrichment_uberon_v019=UBERON:0002037;1.05e-15;6!UBERON:0002680;8.36e-11;9!UBERON:0001895;8.36e-11;9!UBERON:0002369;8.96e-09;3!UBERON:0001235;8.96e-09;3!UBERON:0006858;8.96e-09;3!UBERON:0006915;1.04e-08;3!UBERON:0007616;1.04e-08;3!UBERON:0002217;1.04e-08;3!UBERON:0002018;1.04e-08;3!UBERON:0002114;1.30e-08;2!UBERON:0004733;2.46e-08;12!UBERON:0002028;2.46e-08;12!UBERON:0004732;9.20e-08;13 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.05e-15,6;UBERON:0006215,1.05e-15,6;UBERON:0002680,8.37e-11,9;UBERON:0001895,8.37e-11,9;UBERON:0010092,8.37e-11,9;UBERON:0002369,8.96e-09,3;UBERON:0001235,8.96e-09,3;UBERON:0006858,8.96e-09,3;UBERON:0006915,1.04e-08,3;UBERON:0007616,1.04e-08,3;UBERON:0002217,1.04e-08,3;UBERON:0002018,1.04e-08,3;UBERON:0002114,1.30e-08,2;UBERON:0004733,2.46e-08,12;UBERON:0002028,2.46e-08,12;UBERON:0007277,2.46e-08,12;UBERON:0004732,9.20e-08,13;UBERON:0003076,7.63e-07,15;UBERON:0003057,7.63e-07,15 | |||
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| ||
|short_description=p@chr3:146870027..146870031,- | |short_description=p@chr3:146870027..146870031,- | ||
}} | }} |
Latest revision as of 16:41, 29 July 2015
Short description: | p@chr3:146870027..146870031, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:146870027..146870031, - |
Coexpression cluster: | C1079_synovial_cerebellum_small_Smooth_medulla_spinal_dura |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
synovial cell | 1.04e-08 | 3 |
smooth muscle cell of the brain vasculature | 1.12e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.05e-15 | 6 |
rhombic lip | 1.05e-15 | 6 |
regional part of metencephalon | 8.37e-11 | 9 |
metencephalon | 8.37e-11 | 9 |
future metencephalon | 8.37e-11 | 9 |
adrenal gland | 8.96e-09 | 3 |
adrenal cortex | 8.96e-09 | 3 |
adrenal/interrenal gland | 8.96e-09 | 3 |
stratified squamous epithelium | 1.04e-08 | 3 |
layer of synovial tissue | 1.04e-08 | 3 |
synovial joint | 1.04e-08 | 3 |
synovial membrane of synovial joint | 1.04e-08 | 3 |
duodenum | 1.30e-08 | 2 |
segmental subdivision of hindbrain | 2.46e-08 | 12 |
hindbrain | 2.46e-08 | 12 |
presumptive hindbrain | 2.46e-08 | 12 |
segmental subdivision of nervous system | 9.20e-08 | 13 |
posterior neural tube | 7.63e-07 | 15 |
chordal neural plate | 7.63e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 5.14e-23 | 4 |
bronchus cancer | 1.31e-13 | 7 |
bronchogenic carcinoma | 1.31e-13 | 7 |
lung carcinoma | 8.37e-11 | 9 |
lung cancer | 7.63e-07 | 15 |