FFCP PHASE1:Hg19::chr2:85581643..85581663,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54884 | |EntrezGene=54884 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25991 | |HGNC=25991 | ||
|TSSclassifier=strong | |||
|UniProt=G5E9N3 | |UniProt=G5E9N3 | ||
|association_with_transcript=0bp_to_ENST00000263854,ENST00000457495,ENST00000490291_5end | |association_with_transcript=0bp_to_ENST00000263854,ENST00000457495,ENST00000490291_5end | ||
|cluster_id=chr2:85581643..85581663,- | |||
|coexpression_cluster_id=C892 | |coexpression_cluster_id=C892 | ||
|description=CAGE_peak_1_at_RETSAT_5end | |description=CAGE_peak_1_at_RETSAT_5end | ||
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|ontology_enrichment_celltype=CL:0000220!2.19e-14!246;CL:0000066!4.44e-14!254;CL:0002321!1.57e-13!248;CL:0000136!1.66e-09!15;CL:0000223!3.51e-09!59;CL:0000325!9.06e-09!39;CL:0000222!2.97e-07!119 | |ontology_enrichment_celltype=CL:0000220!2.19e-14!246;CL:0000066!4.44e-14!254;CL:0002321!1.57e-13!248;CL:0000136!1.66e-09!15;CL:0000223!3.51e-09!59;CL:0000325!9.06e-09!39;CL:0000222!2.97e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000136;1.06e-09;13 | |ontology_enrichment_celltype_v019=CL:0000136;1.06e-09;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.54e-14,253;CL:0002321,1.59e-13,250;CL:0000136,1.66e-09,15;CL:0000223,6.64e-09,58;CL:0000222,3.19e-07,121 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!7.60e-18!365;UBERON:0002100!3.87e-15!216;UBERON:0000481!5.14e-15!347;UBERON:0003104!3.50e-14!238;UBERON:0009142!3.50e-14!238;UBERON:0004119!3.95e-14!169;UBERON:0000925!3.95e-14!169;UBERON:0006595!3.95e-14!169;UBERON:0001007!1.71e-11!155;UBERON:0001555!1.71e-11!155;UBERON:0007026!1.71e-11!155;UBERON:0000483!2.34e-11!309;UBERON:0000477!2.38e-11!286;UBERON:0000119!2.92e-11!312;UBERON:0003914!3.67e-11!118;UBERON:0004921!7.61e-11!129;UBERON:0004185!7.61e-11!129;UBERON:0005256!1.35e-10!143;UBERON:0000490!1.78e-10!138;UBERON:0000468!1.90e-10!659;UBERON:0000467!3.60e-10!625;UBERON:0000480!4.53e-10!626;UBERON:0002365!8.15e-10!31;UBERON:0002330!8.15e-10!31;UBERON:0004111!1.06e-09!241;UBERON:0000466!2.47e-09!126;UBERON:0000077!7.97e-09!130;UBERON:0001041!2.16e-08!98;UBERON:0001048!2.51e-08!168;UBERON:0000923!6.30e-08!604;UBERON:0005291!6.30e-08!604;UBERON:0006598!6.30e-08!604;UBERON:0002532!6.30e-08!604;UBERON:0009569!6.87e-08!113;UBERON:0002050!7.99e-08!605;UBERON:0005423!7.99e-08!605;UBERON:0002049!1.02e-07!79;UBERON:0007798!1.02e-07!79;UBERON:0003102!3.75e-07!95;UBERON:0000055!4.15e-07!69;UBERON:0000922!9.20e-07!612 | |ontology_enrichment_uberon=UBERON:0000475!7.60e-18!365;UBERON:0002100!3.87e-15!216;UBERON:0000481!5.14e-15!347;UBERON:0003104!3.50e-14!238;UBERON:0009142!3.50e-14!238;UBERON:0004119!3.95e-14!169;UBERON:0000925!3.95e-14!169;UBERON:0006595!3.95e-14!169;UBERON:0001007!1.71e-11!155;UBERON:0001555!1.71e-11!155;UBERON:0007026!1.71e-11!155;UBERON:0000483!2.34e-11!309;UBERON:0000477!2.38e-11!286;UBERON:0000119!2.92e-11!312;UBERON:0003914!3.67e-11!118;UBERON:0004921!7.61e-11!129;UBERON:0004185!7.61e-11!129;UBERON:0005256!1.35e-10!143;UBERON:0000490!1.78e-10!138;UBERON:0000468!1.90e-10!659;UBERON:0000467!3.60e-10!625;UBERON:0000480!4.53e-10!626;UBERON:0002365!8.15e-10!31;UBERON:0002330!8.15e-10!31;UBERON:0004111!1.06e-09!241;UBERON:0000466!2.47e-09!126;UBERON:0000077!7.97e-09!130;UBERON:0001041!2.16e-08!98;UBERON:0001048!2.51e-08!168;UBERON:0000923!6.30e-08!604;UBERON:0005291!6.30e-08!604;UBERON:0006598!6.30e-08!604;UBERON:0002532!6.30e-08!604;UBERON:0009569!6.87e-08!113;UBERON:0002050!7.99e-08!605;UBERON:0005423!7.99e-08!605;UBERON:0002049!1.02e-07!79;UBERON:0007798!1.02e-07!79;UBERON:0003102!3.75e-07!95;UBERON:0000055!4.15e-07!69;UBERON:0000922!9.20e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0002365;1.49e-09;31!UBERON:0002330;1.49e-09;31 | |ontology_enrichment_uberon_v019=UBERON:0002365;1.49e-09;31!UBERON:0002330;1.49e-09;31 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,3.33e-14,199;UBERON:0004119,3.96e-12,160;UBERON:0000925,3.96e-12,160;UBERON:0006595,3.96e-12,160;UBERON:0000483,8.87e-12,306;UBERON:0000119,1.12e-11,309;UBERON:0003914,2.60e-11,117;UBERON:0005256,3.93e-10,122;UBERON:0000490,4.14e-10,148;UBERON:0002365,8.15e-10,31;UBERON:0002330,8.15e-10,31;UBERON:0001007,9.39e-10,145;UBERON:0001555,9.39e-10,145;UBERON:0007026,9.39e-10,145;UBERON:0004921,2.51e-09,118;UBERON:0004111,2.58e-09,240;UBERON:0003104,2.97e-09,160;UBERON:0009142,2.97e-09,160;UBERON:0003102,5.56e-08,99;UBERON:0009569,1.15e-07,112;UBERON:0002049,1.35e-07,78;UBERON:0007798,1.35e-07,78;UBERON:0001048,2.67e-07,160;UBERON:0000055,5.46e-07,68;UBERON:0001041,5.92e-07,87 | |||
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| ||
|short_description=p1@RETSAT | |short_description=p1@RETSAT | ||
}} | }} |
Latest revision as of 16:01, 18 September 2015
Short description: | p1@RETSAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RETSAT_5end |
Coexpression cluster: | C892_mature_Adipocyte_liver_Hepatocyte_bile_lung_gall |
Association with transcript: | 0bp_to_ENST00000263854, ENST00000457495, ENST00000490291_5end |
EntrezGene: | RETSAT |
HGNC: | 25991 |
UniProt: | G5E9N3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.54e-14 | 253 |
embryonic cell | 1.59e-13 | 250 |
fat cell | 1.66e-09 | 15 |
endodermal cell | 6.64e-09 | 58 |
mesodermal cell | 3.19e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
trunk | 3.33e-14 | 199 |
endoderm-derived structure | 3.96e-12 | 160 |
endoderm | 3.96e-12 | 160 |
presumptive endoderm | 3.96e-12 | 160 |
epithelium | 8.87e-12 | 306 |
cell layer | 1.12e-11 | 309 |
epithelial tube | 2.60e-11 | 117 |
trunk mesenchyme | 3.93e-10 | 122 |
unilaminar epithelium | 4.14e-10 | 148 |
exocrine gland | 8.15e-10 | 31 |
exocrine system | 8.15e-10 | 31 |
digestive system | 9.39e-10 | 145 |
digestive tract | 9.39e-10 | 145 |
primitive gut | 9.39e-10 | 145 |
subdivision of digestive tract | 2.51e-09 | 118 |
anatomical conduit | 2.58e-09 | 240 |
mesenchyme | 2.97e-09 | 160 |
entire embryonic mesenchyme | 2.97e-09 | 160 |
surface structure | 5.56e-08 | 99 |
subdivision of trunk | 1.15e-07 | 112 |
vasculature | 1.35e-07 | 78 |
vascular system | 1.35e-07 | 78 |
primordium | 2.67e-07 | 160 |
vessel | 5.46e-07 | 68 |
foregut | 5.92e-07 | 87 |