FFCP PHASE1:Hg19::chr10:6622667..6622678,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=166bp_to_uc001ijl.2_5end | |association_with_transcript=166bp_to_uc001ijl.2_5end | ||
|cluster_id=chr10:6622667..6622678,+ | |||
|coexpression_cluster_id=C726 | |coexpression_cluster_id=C726 | ||
|description=CAGE_peak_5_at_uc001ijl.2_5end | |description=CAGE_peak_5_at_uc001ijl.2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000084!1.45e-27!25;CL:0000827!1.45e-27!25;CL:0000791!1.94e-24!18;CL:0000789!1.94e-24!18;CL:0002420!1.94e-24!18;CL:0002419!1.94e-24!18;CL:0000790!1.94e-24!18;CL:0000838!9.82e-20!52;CL:0000542!3.50e-19!53;CL:0000051!3.50e-19!53;CL:0000625!3.76e-18!11;CL:0000037!1.00e-10!172;CL:0000566!1.00e-10!172;CL:0000988!1.38e-10!182;CL:0002032!4.59e-09!165;CL:0000837!4.59e-09!165;CL:0002087!1.84e-08!119;CL:0002031!2.00e-08!124;CL:0000738!1.71e-07!140;CL:0000624!7.77e-07!6 | |ontology_enrichment_celltype=CL:0000084!1.45e-27!25;CL:0000827!1.45e-27!25;CL:0000791!1.94e-24!18;CL:0000789!1.94e-24!18;CL:0002420!1.94e-24!18;CL:0002419!1.94e-24!18;CL:0000790!1.94e-24!18;CL:0000838!9.82e-20!52;CL:0000542!3.50e-19!53;CL:0000051!3.50e-19!53;CL:0000625!3.76e-18!11;CL:0000037!1.00e-10!172;CL:0000566!1.00e-10!172;CL:0000988!1.38e-10!182;CL:0002032!4.59e-09!165;CL:0000837!4.59e-09!165;CL:0002087!1.84e-08!119;CL:0002031!2.00e-08!124;CL:0000738!1.71e-07!140;CL:0000624!7.77e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000625;1.89e-15;11!CL:0000791;3.12e-13;18!CL:0000789;3.12e-13;18!CL:0002419;3.12e-13;18!CL:0000084;9.16e-13;25!CL:0000037;3.32e-08;1!CL:0001024;3.32e-08;1!CL:0000895;3.32e-08;1 | |ontology_enrichment_celltype_v019=CL:0000625;1.89e-15;11!CL:0000791;3.12e-13;18!CL:0000789;3.12e-13;18!CL:0002419;3.12e-13;18!CL:0000084;9.16e-13;25!CL:0000037;3.32e-08;1!CL:0001024;3.32e-08;1!CL:0000895;3.32e-08;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000625,3.30e-15,11;CL:0000791,5.31e-13,18;CL:0000789,5.31e-13,18;CL:0002420,5.31e-13,18;CL:0002419,5.31e-13,18;CL:0000790,5.31e-13,18;CL:0000084,1.43e-12,25;CL:0000827,1.43e-12,25;CL:0001024,2.69e-08,1;CL:0000810,5.07e-08,1;CL:0000895,5.07e-08,1;CL:0002436,5.07e-08,1;CL:0002427,5.07e-08,1;CL:0002428,5.07e-08,1;CL:0002429,5.07e-08,1;CL:0002433,5.07e-08,1;CL:0002431,5.07e-08,1;CL:0002432,5.07e-08,1 | |||
|ontology_enrichment_development_v019=CL:0000790;3.12e-13;18!CL:0002427;3.32e-08;1!UBERON:0005425;3.32e-08;1 | |ontology_enrichment_development_v019=CL:0000790;3.12e-13;18!CL:0002427;3.32e-08;1!UBERON:0005425;3.32e-08;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!9.88e-08!4;UBERON:0005058!9.88e-08!4;UBERON:0009113!9.88e-08!4;UBERON:0003295!9.88e-08!4;UBERON:0005562!9.88e-08!4;UBERON:0007023!1.46e-07!115 | |ontology_enrichment_uberon=UBERON:0002370!9.88e-08!4;UBERON:0005058!9.88e-08!4;UBERON:0009113!9.88e-08!4;UBERON:0003295!9.88e-08!4;UBERON:0005562!9.88e-08!4;UBERON:0007023!1.46e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.00e-15;2!UBERON:0005058;4.00e-15;2!UBERON:0009113;4.00e-15;2!UBERON:0000941;3.32e-08;1!UBERON:0001785;3.32e-08;1!UBERON:0002464;3.32e-08;1!UBERON:0004904;3.32e-08;1!UBERON:0001021;3.32e-08;1 | |ontology_enrichment_uberon_v019=UBERON:0002370;4.00e-15;2!UBERON:0005058;4.00e-15;2!UBERON:0009113;4.00e-15;2!UBERON:0000941;3.32e-08;1!UBERON:0001785;3.32e-08;1!UBERON:0002464;3.32e-08;1!UBERON:0004904;3.32e-08;1!UBERON:0001021;3.32e-08;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.75e-16,4;UBERON:0005058,5.75e-16,4;UBERON:0009113,5.75e-16,4;UBERON:0003295,5.75e-16,4;UBERON:0005562,5.75e-16,4;UBERON:0003351,7.93e-11,6;UBERON:0004177,2.37e-09,7;UBERON:0005057,2.37e-09,7;UBERON:0000941,2.89e-08,1;UBERON:0001785,2.89e-08,1;UBERON:0002464,2.89e-08,1;UBERON:0004904,2.89e-08,1;UBERON:0001021,2.89e-08,1;UBERON:0003902,2.89e-08,1;UBERON:0005425,2.89e-08,1 | |||
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| ||
|short_description=p5@uc001ijl.2 | |short_description=p5@uc001ijl.2 | ||
}} | }} |
Latest revision as of 14:50, 23 July 2015
Short description: | p5@uc001ijl.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_uc001ijl.2_5end |
Coexpression cluster: | C726_chronic_CD4_Hodgkin_CD8_thymus_CD19_blood |
Association with transcript: | 166bp_to_uc001ijl.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 3.30e-15 | 11 |
mature alpha-beta T cell | 5.31e-13 | 18 |
alpha-beta T cell | 5.31e-13 | 18 |
immature T cell | 5.31e-13 | 18 |
mature T cell | 5.31e-13 | 18 |
immature alpha-beta T cell | 5.31e-13 | 18 |
T cell | 1.43e-12 | 25 |
pro-T cell | 1.43e-12 | 25 |
CD34-positive, CD38-negative hematopoietic stem cell | 2.69e-08 | 1 |
CD4-positive, alpha-beta thymocyte | 5.07e-08 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 5.07e-08 | 1 |
mature CD4 single-positive thymocyte | 5.07e-08 | 1 |
resting double-positive thymocyte | 5.07e-08 | 1 |
double-positive blast | 5.07e-08 | 1 |
CD69-positive double-positive thymocyte | 5.07e-08 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 5.07e-08 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 5.07e-08 | 1 |
CD24-positive, CD4 single-positive thymocyte | 5.07e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 5.75e-16 | 4 |
hemolymphoid system gland | 5.75e-16 | 4 |
thymic region | 5.75e-16 | 4 |
pharyngeal gland | 5.75e-16 | 4 |
thymus primordium | 5.75e-16 | 4 |
pharyngeal epithelium | 7.93e-11 | 6 |
hemopoietic organ | 2.37e-09 | 7 |
immune organ | 2.37e-09 | 7 |
cranial nerve II | 2.89e-08 | 1 |
cranial nerve | 2.89e-08 | 1 |
nerve trunk | 2.89e-08 | 1 |
nerve connecting eye with brain | 2.89e-08 | 1 |
nerve | 2.89e-08 | 1 |
retinal neural layer | 2.89e-08 | 1 |
presumptive neural retina | 2.89e-08 | 1 |