FFCP PHASE1:Hg19::chr7:80546293..80546302,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10512 | |EntrezGene=10512 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=10725 | |HGNC=10725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-196bp_to_AB385180,CU688988,DQ890847,DQ894001_5end | |association_with_transcript=-196bp_to_AB385180,CU688988,DQ890847,DQ894001_5end | ||
|cluster_id=chr7:80546293..80546302,- | |||
|coexpression_cluster_id=C3257 | |coexpression_cluster_id=C3257 | ||
|description=CAGE_peak_31_at_SEMA3C_5end | |description=CAGE_peak_31_at_SEMA3C_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000153!9.78e-12!9;CL:0000447!9.78e-12!9;CL:0000214!3.73e-10!3;CL:0002579!1.57e-09!3;CL:0000499!1.70e-07!27;CL:0000327!2.84e-07!14 | |ontology_enrichment_celltype=CL:0000153!9.78e-12!9;CL:0000447!9.78e-12!9;CL:0000214!3.73e-10!3;CL:0002579!1.57e-09!3;CL:0000499!1.70e-07!27;CL:0000327!2.84e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000214;6.24e-88;3!CL:0000153;2.66e-30;9!CL:0000447;2.66e-30;9!CL:0000327;1.04e-18;15!CL:0000499;1.40e-10;28!CL:0002078;5.41e-08;45 | |ontology_enrichment_celltype_v019=CL:0000214;6.24e-88;3!CL:0000153;2.66e-30;9!CL:0000447;2.66e-30;9!CL:0000327;1.04e-18;15!CL:0000499;1.40e-10;28!CL:0002078;5.41e-08;45 | ||
|ontology_enrichment_celltype_v019_2=CL:0000214,6.24e-88,3;CL:0000153,2.66e-30,9;CL:0000447,2.66e-30,9;CL:0000327,1.04e-18,15;CL:0000499,1.40e-10,28;CL:0000151,1.78e-08,36;CL:0002078,5.42e-07,45 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:2394!5.93e-07!14 | |ontology_enrichment_disease=DOID:2394!5.93e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:6193;4.66e-66;1!DOID:3350;7.05e-34;2 | |ontology_enrichment_disease_v019=DOID:6193;4.66e-66;1!DOID:3350;7.05e-34;2 | ||
|ontology_enrichment_disease_v019_2=DOID:6193,4.66e-66,1;DOID:3350,7.05e-34,2 | |||
|ontology_enrichment_uberon=UBERON:0004457!1.06e-11!12;UBERON:0000042!1.06e-11!12;UBERON:0006915!3.73e-10!3;UBERON:0002018!3.73e-10!3;UBERON:0002217!3.73e-10!3;UBERON:0007616!3.73e-10!3;UBERON:0003688!2.72e-08!6;UBERON:0002358!2.72e-08!6;UBERON:0003684!2.72e-08!6;UBERON:0001178!2.72e-08!6;UBERON:0004458!2.39e-07!49 | |ontology_enrichment_uberon=UBERON:0004457!1.06e-11!12;UBERON:0000042!1.06e-11!12;UBERON:0006915!3.73e-10!3;UBERON:0002018!3.73e-10!3;UBERON:0002217!3.73e-10!3;UBERON:0007616!3.73e-10!3;UBERON:0003688!2.72e-08!6;UBERON:0002358!2.72e-08!6;UBERON:0003684!2.72e-08!6;UBERON:0001178!2.72e-08!6;UBERON:0004458!2.39e-07!49 | ||
|ontology_enrichment_uberon_v019=UBERON:0006915;6.24e-88;3!UBERON:0007616;6.24e-88;3!UBERON:0002217;6.24e-88;3!UBERON:0002018;6.24e-88;3!UBERON:0004905;6.50e-34;8!UBERON:0000982;6.50e-34;8!UBERON:0004770;6.50e-34;8!UBERON:0004457;2.66e-30;9!UBERON:0000042;2.66e-30;9!UBERON:0000486;4.59e-23;12!UBERON:0006914;1.03e-11;25!UBERON:0001434;7.66e-07;36 | |ontology_enrichment_uberon_v019=UBERON:0006915;6.24e-88;3!UBERON:0007616;6.24e-88;3!UBERON:0002217;6.24e-88;3!UBERON:0002018;6.24e-88;3!UBERON:0004905;6.50e-34;8!UBERON:0000982;6.50e-34;8!UBERON:0004770;6.50e-34;8!UBERON:0004457;2.66e-30;9!UBERON:0000042;2.66e-30;9!UBERON:0000486;4.59e-23;12!UBERON:0006914;1.03e-11;25!UBERON:0001434;7.66e-07;36 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,6.24e-88,3;UBERON:0007616,6.24e-88,3;UBERON:0002217,6.24e-88,3;UBERON:0002018,6.24e-88,3;UBERON:0004905,6.50e-34,8;UBERON:0000982,6.50e-34,8;UBERON:0004770,6.50e-34,8;UBERON:0004457,4.59e-23,12;UBERON:0000042,4.59e-23,12;UBERON:0006914,1.03e-11,25 | |||
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|phase1_expression=0.181678379270557,0,0.563817616383885,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0.221729397462564,0,0,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0.503946384596579,0.567100388969546,0.358234090811393,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0.289562613335158,0,0.358121926479791,0,0,0,0,0,0,0,0.502548796003046,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0.511707249066704,0.160853921143607,0,0,0,0.0821271560138091,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74439925886963,9.22025700287725,0,0,0,0,0,0,0,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,1.20390222730132,0,0,0,0,0.441280633457501,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.418411385249333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.653174720218818,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0.2506898940227,0.612691153526923,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0.251567901752575,0,0,0,0,0,0,0.449803112163605,0.310525913752519,0,0,0,0.300515217994437,0.380805212168795,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.594600453887843,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0.743990036333503,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p31@SEMA3C | |short_description=p31@SEMA3C | ||
}} | }} |
Latest revision as of 17:22, 19 September 2015
Short description: | p31@SEMA3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_31_at_SEMA3C_5end |
Coexpression cluster: | C3257_Synoviocyte_tenocyte_left_heart_gall_mesenchymal_Astrocyte |
Association with transcript: | -196bp_to_AB385180, CU688988, DQ890847, DQ894001_5end |
EntrezGene: | SEMA3C |
HGNC: | 10725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
synovial cell | 6.24e-88 | 3 |
GAG secreting cell | 2.66e-30 | 9 |
carbohydrate secreting cell | 2.66e-30 | 9 |
extracellular matrix secreting cell | 1.04e-18 | 15 |
stromal cell | 1.40e-10 | 28 |
secretory cell | 1.78e-08 | 36 |
meso-epithelial cell | 5.42e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 6.24e-88 | 3 |
layer of synovial tissue | 6.24e-88 | 3 |
synovial joint | 6.24e-88 | 3 |
synovial membrane of synovial joint | 6.24e-88 | 3 |
articulation | 6.50e-34 | 8 |
skeletal joint | 6.50e-34 | 8 |
articular system | 6.50e-34 | 8 |
cavity lining | 4.59e-23 | 12 |
serous membrane | 4.59e-23 | 12 |
squamous epithelium | 1.03e-11 | 25 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 4.66e-66 | 1 |
mesenchymal cell neoplasm | 7.05e-34 | 2 |