FFCP PHASE1:Hg19::chr12:66218836..66218888,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt=F5H2A4 | |UniProt=F5H2A4 | ||
|association_with_transcript=-14bp_to_ENST00000393577_5end | |association_with_transcript=-14bp_to_ENST00000393577_5end | ||
|cluster_id=chr12:66218836..66218888,+ | |||
|coexpression_cluster_id=C1682 | |coexpression_cluster_id=C1682 | ||
|description=CAGE_peak_1_at_HMGA2_5end | |description=CAGE_peak_1_at_HMGA2_5end | ||
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|ontology_enrichment_celltype=CL:0002321!5.77e-32!248;CL:0000220!5.15e-31!246;CL:0000055!3.41e-27!180;CL:0000012!2.18e-21!682;CL:0000548!1.81e-20!679;CL:0000004!1.81e-20!679;CL:0000255!1.81e-20!679;CL:0000144!4.93e-18!625;CL:0000680!7.50e-18!57;CL:0000056!7.50e-18!57;CL:0000355!7.50e-18!57;CL:0002371!4.02e-17!591;CL:0000066!6.26e-17!254;CL:0000393!6.86e-17!60;CL:0000211!6.86e-17!60;CL:0000183!1.42e-16!59;CL:0000222!1.82e-16!119;CL:0000187!1.88e-16!54;CL:0000192!4.27e-15!42;CL:0000514!4.27e-15!42;CL:0000359!4.71e-13!32;CL:0000223!2.36e-10!59;CL:0002076!3.10e-10!43;CL:0000003!5.66e-10!722;CL:0000057!1.02e-08!75 | |ontology_enrichment_celltype=CL:0002321!5.77e-32!248;CL:0000220!5.15e-31!246;CL:0000055!3.41e-27!180;CL:0000012!2.18e-21!682;CL:0000548!1.81e-20!679;CL:0000004!1.81e-20!679;CL:0000255!1.81e-20!679;CL:0000144!4.93e-18!625;CL:0000680!7.50e-18!57;CL:0000056!7.50e-18!57;CL:0000355!7.50e-18!57;CL:0002371!4.02e-17!591;CL:0000066!6.26e-17!254;CL:0000393!6.86e-17!60;CL:0000211!6.86e-17!60;CL:0000183!1.42e-16!59;CL:0000222!1.82e-16!119;CL:0000187!1.88e-16!54;CL:0000192!4.27e-15!42;CL:0000514!4.27e-15!42;CL:0000359!4.71e-13!32;CL:0000223!2.36e-10!59;CL:0002076!3.10e-10!43;CL:0000003!5.66e-10!722;CL:0000057!1.02e-08!75 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.13e-12;32!CL:0000192;2.40e-11;43!CL:0000187;9.41e-10;55!CL:0000393;1.41e-08;61!CL:0000211;1.41e-08;61!CL:0002076;3.00e-08;42!CL:0002539;9.33e-07;10 | |ontology_enrichment_celltype_v019=CL:0000359;1.13e-12;32!CL:0000192;2.40e-11;43!CL:0000187;9.41e-10;55!CL:0000393;1.41e-08;61!CL:0000211;1.41e-08;61!CL:0002076;3.00e-08;42!CL:0002539;9.33e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.15e-32,250;CL:0000680,1.44e-18,58;CL:0000056,1.44e-18,58;CL:0000355,1.44e-18,58;CL:0000393,1.40e-17,61;CL:0000211,1.40e-17,61;CL:0000187,4.02e-17,55;CL:0000066,7.85e-17,253;CL:0000222,1.84e-16,121;CL:0000192,1.06e-15,43;CL:0000514,1.06e-15,43;CL:0000359,1.94e-13,32;CL:0000223,1.34e-10,58;CL:0002076,1.65e-10,42;CL:0000057,4.46e-09,76;CL:0002539,9.67e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;2.40e-11;43!CL:0000355;5.04e-10;58 | |ontology_enrichment_development_v019=CL:0000514;2.40e-11;43!CL:0000355;5.04e-10;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|phase1_expression=2.72517568905835,6.85121676451146,0.704772020479856,4.00293193412522,1.34088328328186,0,7.59899634504932,25.2687949370732,3.13422753839806,22.8532560946403,38.3790642384835,114.24483762408,59.0838031231736,49.7540738899387,63.9596935154877,199.008243349725,236.858949513423,216.90209684505,248.845727383159,14.1589216788306,23.6640801843333,6.26909442956176,7.15589967827642,10.9499540058307,19.2080238580048,18.0335637565165,16.1738161216393,18.0247689208325,0,0.383829398097213,2.78669021968937,33.0991640812414,41.5664167913985,42.8914651793474,0,0,25.8368386614666,0.553995408531877,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0.619412741790207,0.28769239232215,0,0,1.03423704220986,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0.290209238628584,0.56738522469114,0,0,0,0,0,0.368277635987565,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,55.5119580031909,35.8725480308183,14.7495087474043,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,27.4987352478491,9.97327982379537,8.31310050484502,2.50668955317945,5.5041677205113,27.8350081467885,31.6312665696713,46.8892693133777,80.9312300738358,71.9366894826702,0.196468613246569,30.236508928281,24.4717732237723,0,0,0,0,0,0,18.0873790703702,18.0649264972286,15.2741820707341,42.3980956443007,34.8184532054222,38.2414078296694,25.9153758505645,24.8080088802556,29.1728335403102,10.7110596084694,9.26507429351038,6.0821768457481,5.36936526605973,38.9722865166621,43.747665185615,49.0255508279598,52.5398731945237,60.810199460994,33.7296602424943,51.260345616679,36.0907435542902,0,0,19.1881382942715,8.94549513051573,31.4043668928158,134.792546067857,40.1571269048339,35.8215066020341,28.5945576072577,43.767088249179,69.5602486536391,42.0134897789684,55.6355075647812,86.7982705532466,26.3361924102181,67.9887590886399,13.1220001826926,247.855101003274,58.7585976190783,298.449015061947,19.0243887802899,36.7451583715659,38.0621686163093,65.9417973153305,149.243695533798,17.2554054563528,14.2560342873846,16.3196173323848,15.4727431529464,20.8399261126709,57.7392870862447,51.4237116673773,60.3999771755519,15.8031943517102,15.937365381549,20.7328521291104,113.091886610541,31.3931862455508,7.68806599746843,15.2590968834885,39.3119335870567,17.4158774412962,12.3667459221902,6.70020682793723,31.2236214646343,8.28214543870188,26.0006787471438,13.3472353031334,13.4166227159614,22.7206139210633,9.26919303694291,26.1123312158151,191.908027191154,146.464666757278,168.354297493345,101.482123499823,88.6624150070736,124.211324927515,81.995894517158,120.357045867675,89.0544756145025,14.0804579096834,10.2918550110862,31.7710319110705,31.5770191061746,20.934504968418,0,0,0,0,0,0,0,0,0,22.1446636387394,43.4749498790682,18.9324045212444,20.5812195939759,0,0,0.590789906681404,22.0731549707325,35.4206703004167,65.3673357237382,67.0574243846702,29.2244558469811,25.6348879649659,147.215627802062,21.1775398451711,35.3577826995057,49.0726562885929,25.8524803094421,64.4573731354661,17.4683401790899,22.2233046036773,7.41991193714933,0,0,0,0.468008530278475,0.148631162288728,88.1098039475704,89.3664922017933,53.3074365631373,57.2278960071201,45.920162285206,16.8688378832693,0.492663237895943,0,0,0,0,0.063497894292169,1.14596527667483,0,6.84289784090821,3.90744472272629,1.20137223137567,0,58.8688192813144,31.8250850248294,80.0120698306565,184.858553533622,7.15312891703765,20.287266061344,21.2750493267896,41.6029747645464,69.7031984250405,153.197062585141,179.302126477835,6.14805372730035,10.8524321078289,14.8183260620538,15.961073030393,6.04166312862328,45.9332086301389,25.3209076730052,36.6044052612123,7.09808237392605,0,0,0,31.8701057803805,6.89171615004683,92.7139882764669,91.5017858139101,181.846545457089,58.0157520897262,0,0.394061520403854,0.215627574859517,0.128343036279748,7.87693335089637,7.8083912314573,3.09315525111078,4.52293916402742,5.74144876487847,0,0,0,19.7533301667815,87.5298411854435,200.193587490405,5.8231841228626,14.9880350589616,3.15404830067869,9.01988895443892,31.2983943716828,31.8370505678379,43.4586899428521,92.3273581964257,68.5853306975136,124.764870376167,11.9438706052272,25.3926133620033,0.206768026122887,0.215714200818617,0,19.4001645725606,54.923695038464,94.6481618121899,2.72918588600655,4.910783145218,3.36792113319688,3.58789617915963,4.09365799253363,5.95159508231348,7.42090332224955,96.3810586266597,47.0538572079787,62.4987657265088,173.950233776513,67.1695987498564,36.6204132262615,147.171749202611,18.8766027318587,12.6295892981067,53.7168945619815,15.9971786250497,54.1439535488894,113.366576217699,32.9426903054279,54.0715131217065,123.917612320236,10.2360045663807,22.2822753912235,77.513813880668,7.71136263451447,43.3514300070165,19.5659011803393,32.6241629497649,32.4119643482202,52.6105673597119,10.9629938322967,12.2874661981703,23.5934115107078,40.6738160667635,66.0518141168535,0.103041011647722,2.1060976908219,2.47528499761764,34.4559322797703,32.5030123018261,9.64103579064957,57.9057602569811,33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| ||
|short_description=p1@HMGA2 | |short_description=p1@HMGA2 | ||
}} | }} |
Latest revision as of 23:29, 19 September 2015
Short description: | p1@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMGA2_5end |
Coexpression cluster: | C1682_schwannoma_Fibroblast_hepatoblastoma_Wilms_adrenal_Aortic_meningioma |
Association with transcript: | -14bp_to_ENST00000393577_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | F5H2A4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.15e-32 | 250 |
muscle precursor cell | 1.44e-18 | 58 |
myoblast | 1.44e-18 | 58 |
multi-potent skeletal muscle stem cell | 1.44e-18 | 58 |
electrically responsive cell | 1.40e-17 | 61 |
electrically active cell | 1.40e-17 | 61 |
muscle cell | 4.02e-17 | 55 |
epithelial cell | 7.85e-17 | 253 |
mesodermal cell | 1.84e-16 | 121 |
smooth muscle cell | 1.06e-15 | 43 |
smooth muscle myoblast | 1.06e-15 | 43 |
vascular associated smooth muscle cell | 1.94e-13 | 32 |
endodermal cell | 1.34e-10 | 58 |
endo-epithelial cell | 1.65e-10 | 42 |
fibroblast | 4.46e-09 | 76 |
aortic smooth muscle cell | 9.67e-07 | 10 |