FFCP PHASE1:Hg19::chr10:17270548..17270610,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7431 | |EntrezGene=7431 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12692 | |HGNC=12692 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=34bp_to_ENST00000478746_5end | |association_with_transcript=34bp_to_ENST00000478746_5end | ||
|cluster_id=chr10:17270548..17270610,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_2_at_VIM_5end | |description=CAGE_peak_2_at_VIM_5end | ||
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|ontology_enrichment_celltype=CL:0002057!2.12e-26!42;CL:0000766!5.19e-25!76;CL:0000860!5.96e-24!45;CL:0000557!3.82e-22!71;CL:0002371!2.16e-21!591;CL:0000144!8.11e-21!625;CL:0002009!2.36e-19!65;CL:0000738!1.17e-18!140;CL:0000839!1.69e-18!70;CL:0002194!2.90e-18!63;CL:0000576!2.90e-18!63;CL:0000040!2.90e-18!63;CL:0000559!2.90e-18!63;CL:0000048!1.19e-15!430;CL:0000034!1.22e-15!444;CL:0000723!4.99e-15!436;CL:0000003!2.00e-13!722;CL:0002320!2.32e-13!365;CL:0000012!3.09e-13!682;CL:0000134!4.32e-13!358;CL:0002031!6.58e-13!124;CL:0000763!9.61e-13!112;CL:0000049!9.61e-13!112;CL:0002087!1.96e-12!119;CL:0000548!3.29e-12!679;CL:0000004!3.29e-12!679;CL:0000255!3.29e-12!679;CL:0000988!5.56e-12!182;CL:0000219!8.97e-12!390;CL:0000037!3.65e-11!172;CL:0000566!3.65e-11!172;CL:0002032!1.13e-09!165;CL:0000837!1.13e-09!165;CL:0000063!3.44e-08!578;CL:0002139!1.43e-07!24 | |ontology_enrichment_celltype=CL:0002057!2.12e-26!42;CL:0000766!5.19e-25!76;CL:0000860!5.96e-24!45;CL:0000557!3.82e-22!71;CL:0002371!2.16e-21!591;CL:0000144!8.11e-21!625;CL:0002009!2.36e-19!65;CL:0000738!1.17e-18!140;CL:0000839!1.69e-18!70;CL:0002194!2.90e-18!63;CL:0000576!2.90e-18!63;CL:0000040!2.90e-18!63;CL:0000559!2.90e-18!63;CL:0000048!1.19e-15!430;CL:0000034!1.22e-15!444;CL:0000723!4.99e-15!436;CL:0000003!2.00e-13!722;CL:0002320!2.32e-13!365;CL:0000012!3.09e-13!682;CL:0000134!4.32e-13!358;CL:0002031!6.58e-13!124;CL:0000763!9.61e-13!112;CL:0000049!9.61e-13!112;CL:0002087!1.96e-12!119;CL:0000548!3.29e-12!679;CL:0000004!3.29e-12!679;CL:0000255!3.29e-12!679;CL:0000988!5.56e-12!182;CL:0000219!8.97e-12!390;CL:0000037!3.65e-11!172;CL:0000566!3.65e-11!172;CL:0002032!1.13e-09!165;CL:0000837!1.13e-09!165;CL:0000063!3.44e-08!578;CL:0002139!1.43e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.36e-20;33!CL:0002057;1.36e-20;33!CL:0000473;4.17e-15;39!CL:0000234;4.17e-15;39!CL:0000576;9.88e-14;48!CL:0000766;9.79e-13;69!CL:0002139;1.41e-07;24 | |ontology_enrichment_celltype_v019=CL:0000860;1.36e-20;33!CL:0002057;1.36e-20;33!CL:0000473;4.17e-15;39!CL:0000234;4.17e-15;39!CL:0000576;9.88e-14;48!CL:0000766;9.79e-13;69!CL:0002139;1.41e-07;24 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.05e-26,42;CL:0002057,1.05e-26,42;CL:0000766,1.50e-26,72;CL:0000557,1.39e-23,67;CL:0000473,1.79e-23,48;CL:0000234,1.79e-23,48;CL:0002009,1.04e-20,61;CL:0000839,5.76e-20,66;CL:0002194,1.42e-19,59;CL:0000576,1.42e-19,59;CL:0000040,1.42e-19,59;CL:0000559,1.42e-19,59;CL:0000738,1.78e-19,136;CL:0000034,2.86e-16,441;CL:0000048,3.66e-16,427;CL:0000723,1.21e-15,433;CL:0002320,5.61e-14,361;CL:0000134,1.06e-13,354;CL:0002031,1.07e-13,120;CL:0000763,2.05e-13,108;CL:0000049,2.05e-13,108;CL:0002087,4.64e-13,115;CL:0000219,1.69e-12,386;CL:0000988,2.31e-12,177;CL:0000037,1.07e-11,168;CL:0002032,3.73e-10,161;CL:0000837,3.73e-10,161;CL:0002139,1.21e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;1.68e-19;42 | |ontology_enrichment_development_v019=CL:0002057;1.68e-19;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!5.37e-32!216;UBERON:0002193!2.42e-22!112;UBERON:0002390!1.18e-21!102;UBERON:0003061!1.18e-21!102;UBERON:0002371!5.60e-20!80;UBERON:0001474!5.05e-19!86;UBERON:0004765!8.76e-17!101;UBERON:0001434!8.76e-17!101;UBERON:0002204!1.00e-13!167;UBERON:0002384!5.36e-13!375;UBERON:0002405!8.96e-12!115;UBERON:0004535!1.85e-10!110;UBERON:0001009!2.09e-09!113;UBERON:0000055!3.51e-09!69;UBERON:0002049!1.80e-08!79;UBERON:0007798!1.80e-08!79;UBERON:0001981!4.65e-08!60;UBERON:0007500!4.65e-08!60;UBERON:0004537!4.65e-08!60;UBERON:0006965!4.65e-08!60;UBERON:0000926!2.03e-07!448;UBERON:0004120!2.03e-07!448;UBERON:0006603!2.03e-07!448;UBERON:0004872!3.71e-07!84 | |ontology_enrichment_uberon=UBERON:0003081!5.37e-32!216;UBERON:0002193!2.42e-22!112;UBERON:0002390!1.18e-21!102;UBERON:0003061!1.18e-21!102;UBERON:0002371!5.60e-20!80;UBERON:0001474!5.05e-19!86;UBERON:0004765!8.76e-17!101;UBERON:0001434!8.76e-17!101;UBERON:0002204!1.00e-13!167;UBERON:0002384!5.36e-13!375;UBERON:0002405!8.96e-12!115;UBERON:0004535!1.85e-10!110;UBERON:0001009!2.09e-09!113;UBERON:0000055!3.51e-09!69;UBERON:0002049!1.80e-08!79;UBERON:0007798!1.80e-08!79;UBERON:0001981!4.65e-08!60;UBERON:0007500!4.65e-08!60;UBERON:0004537!4.65e-08!60;UBERON:0006965!4.65e-08!60;UBERON:0000926!2.03e-07!448;UBERON:0004120!2.03e-07!448;UBERON:0006603!2.03e-07!448;UBERON:0004872!3.71e-07!84 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
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| ||
|short_description=p2@VIM | |short_description=p2@VIM | ||
}} | }} |
Latest revision as of 10:21, 17 September 2015
Short description: | p2@VIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VIM_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 34bp_to_ENST00000478746_5end |
EntrezGene: | VIM |
HGNC: | 12692 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.05e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.05e-26 | 42 |
myeloid leukocyte | 1.50e-26 | 72 |
granulocyte monocyte progenitor cell | 1.39e-23 | 67 |
defensive cell | 1.79e-23 | 48 |
phagocyte | 1.79e-23 | 48 |
macrophage dendritic cell progenitor | 1.04e-20 | 61 |
myeloid lineage restricted progenitor cell | 5.76e-20 | 66 |
monopoietic cell | 1.42e-19 | 59 |
monocyte | 1.42e-19 | 59 |
monoblast | 1.42e-19 | 59 |
promonocyte | 1.42e-19 | 59 |
leukocyte | 1.78e-19 | 136 |
stem cell | 2.86e-16 | 441 |
multi fate stem cell | 3.66e-16 | 427 |
somatic stem cell | 1.21e-15 | 433 |
connective tissue cell | 5.61e-14 | 361 |
mesenchymal cell | 1.06e-13 | 354 |
hematopoietic lineage restricted progenitor cell | 1.07e-13 | 120 |
myeloid cell | 2.05e-13 | 108 |
common myeloid progenitor | 2.05e-13 | 108 |
nongranular leukocyte | 4.64e-13 | 115 |
motile cell | 1.69e-12 | 386 |
hematopoietic cell | 2.31e-12 | 177 |
hematopoietic stem cell | 1.07e-11 | 168 |
hematopoietic oligopotent progenitor cell | 3.73e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.73e-10 | 161 |
endothelial cell of vascular tree | 1.21e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.62e-30 | 203 |
hemolymphoid system | 1.97e-23 | 108 |
hematopoietic system | 8.55e-23 | 98 |
blood island | 8.55e-23 | 98 |
bone marrow | 2.89e-21 | 76 |
immune system | 3.56e-20 | 93 |
bone element | 4.58e-20 | 82 |
skeletal element | 1.94e-18 | 90 |
skeletal system | 3.49e-17 | 100 |
mesoderm | 1.07e-16 | 315 |
mesoderm-derived structure | 1.07e-16 | 315 |
presumptive mesoderm | 1.07e-16 | 315 |
connective tissue | 1.42e-13 | 371 |
musculoskeletal system | 1.65e-13 | 167 |
cardiovascular system | 5.30e-10 | 109 |
vessel | 9.22e-09 | 68 |
circulatory system | 9.25e-09 | 112 |
vasculature | 5.52e-08 | 78 |
vascular system | 5.52e-08 | 78 |
epithelial tube open at both ends | 1.24e-07 | 59 |
blood vessel | 1.24e-07 | 59 |
blood vasculature | 1.24e-07 | 59 |
vascular cord | 1.24e-07 | 59 |
splanchnic layer of lateral plate mesoderm | 8.39e-07 | 83 |