FFCP PHASE1:Hg19::chr13:37494275..37494304,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4093 | |EntrezGene=4093 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6774 | |HGNC=6774 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=70bp_to_ENST00000350148_5end | |association_with_transcript=70bp_to_ENST00000350148_5end | ||
|cluster_id=chr13:37494275..37494304,- | |||
|coexpression_cluster_id=C3369 | |coexpression_cluster_id=C3369 | ||
|description=CAGE_peak_2_at_SMAD9_5end | |description=CAGE_peak_2_at_SMAD9_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000055!3.99e-07!180 | |ontology_enrichment_celltype=CL:0000055!3.99e-07!180 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:171!3.10e-07!10 | |ontology_enrichment_disease=DOID:171!3.10e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:171;1.24e-09;10 | |ontology_enrichment_disease_v019=DOID:171;1.24e-09;10 | ||
|ontology_enrichment_disease_v019_2=DOID:171,1.12e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.29e-20!115;UBERON:0000073!3.89e-15!94;UBERON:0001016!3.89e-15!94;UBERON:0005743!4.26e-13!86;UBERON:0002346!2.50e-12!90;UBERON:0000475!2.65e-12!365;UBERON:0001049!1.27e-11!57;UBERON:0005068!1.27e-11!57;UBERON:0006241!1.27e-11!57;UBERON:0007135!1.27e-11!57;UBERON:0001017!2.19e-11!82;UBERON:0003075!2.43e-10!86;UBERON:0007284!2.43e-10!86;UBERON:0000468!5.09e-10!659;UBERON:0002780!3.85e-09!41;UBERON:0001890!3.85e-09!41;UBERON:0006240!3.85e-09!41;UBERON:0000483!4.67e-09!309;UBERON:0000119!8.48e-09!312;UBERON:0000955!9.06e-09!69;UBERON:0006238!9.06e-09!69;UBERON:0003080!1.28e-08!42;UBERON:0000481!1.29e-08!347;UBERON:0000924!1.65e-08!173;UBERON:0006601!1.65e-08!173;UBERON:0002616!2.76e-08!59;UBERON:0004111!4.45e-08!241;UBERON:0000025!4.48e-08!194;UBERON:0000477!9.94e-08!286;UBERON:0003056!1.07e-07!61;UBERON:0001893!1.21e-07!34;UBERON:0002020!1.28e-07!34;UBERON:0003528!1.28e-07!34;UBERON:0002791!2.21e-07!33;UBERON:0004121!3.62e-07!169 | |ontology_enrichment_uberon=UBERON:0007023!4.29e-20!115;UBERON:0000073!3.89e-15!94;UBERON:0001016!3.89e-15!94;UBERON:0005743!4.26e-13!86;UBERON:0002346!2.50e-12!90;UBERON:0000475!2.65e-12!365;UBERON:0001049!1.27e-11!57;UBERON:0005068!1.27e-11!57;UBERON:0006241!1.27e-11!57;UBERON:0007135!1.27e-11!57;UBERON:0001017!2.19e-11!82;UBERON:0003075!2.43e-10!86;UBERON:0007284!2.43e-10!86;UBERON:0000468!5.09e-10!659;UBERON:0002780!3.85e-09!41;UBERON:0001890!3.85e-09!41;UBERON:0006240!3.85e-09!41;UBERON:0000483!4.67e-09!309;UBERON:0000119!8.48e-09!312;UBERON:0000955!9.06e-09!69;UBERON:0006238!9.06e-09!69;UBERON:0003080!1.28e-08!42;UBERON:0000481!1.29e-08!347;UBERON:0000924!1.65e-08!173;UBERON:0006601!1.65e-08!173;UBERON:0002616!2.76e-08!59;UBERON:0004111!4.45e-08!241;UBERON:0000025!4.48e-08!194;UBERON:0000477!9.94e-08!286;UBERON:0003056!1.07e-07!61;UBERON:0001893!1.21e-07!34;UBERON:0002020!1.28e-07!34;UBERON:0003528!1.28e-07!34;UBERON:0002791!2.21e-07!33;UBERON:0004121!3.62e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.63e-08;9!UBERON:0000042;2.63e-08;9!UBERON:0003688;1.20e-07;6!UBERON:0002358;1.20e-07;6!UBERON:0003684;1.20e-07;6!UBERON:0001178;1.20e-07;6!UBERON:0002050;8.31e-07;5!UBERON:0005423;8.31e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0004457;2.63e-08;9!UBERON:0000042;2.63e-08;9!UBERON:0003688;1.20e-07;6!UBERON:0002358;1.20e-07;6!UBERON:0003684;1.20e-07;6!UBERON:0001178;1.20e-07;6!UBERON:0002050;8.31e-07;5!UBERON:0005423;8.31e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.23e-20,114;UBERON:0002346,1.32e-13,86;UBERON:0001016,2.71e-13,89;UBERON:0001049,1.80e-11,56;UBERON:0005068,1.80e-11,56;UBERON:0006241,1.80e-11,56;UBERON:0007135,1.80e-11,56;UBERON:0010314,6.27e-11,132;UBERON:0003075,7.21e-11,82;UBERON:0007284,7.21e-11,82;UBERON:0001017,1.12e-10,81;UBERON:0000073,1.82e-09,53;UBERON:0002616,1.82e-09,53;UBERON:0011216,4.30e-09,223;UBERON:0004121,8.56e-09,171;UBERON:0000924,8.56e-09,171;UBERON:0006601,8.56e-09,171;UBERON:0010371,9.53e-09,104;UBERON:0000955,1.29e-07,68;UBERON:0006238,1.29e-07,68;UBERON:0003688,1.55e-07,6;UBERON:0002358,1.55e-07,6;UBERON:0003684,1.55e-07,6;UBERON:0001178,1.55e-07,6;UBERON:0002780,1.73e-07,41;UBERON:0001890,1.73e-07,41;UBERON:0003080,1.73e-07,41;UBERON:0006240,1.73e-07,41;UBERON:0000966,6.45e-07,6;UBERON:0005388,6.45e-07,6;UBERON:0001802,6.45e-07,6;UBERON:0003056,7.89e-07,61;UBERON:0004457,8.60e-07,12;UBERON:0000042,8.60e-07,12 | |||
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| ||
|short_description=p2@SMAD9 | |short_description=p2@SMAD9 | ||
}} | }} |
Latest revision as of 06:19, 17 September 2015
Short description: | p2@SMAD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMAD9_5end |
Coexpression cluster: | C3369_peripheral_thyroid_medulloblastoma_argyrophil_neuroblastoma_Adipocyte_neuroectodermal |
Association with transcript: | 70bp_to_ENST00000350148_5end |
EntrezGene: | SMAD9 |
HGNC: | 6774 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.23e-20 | 114 |
neurectoderm | 1.32e-13 | 86 |
nervous system | 2.71e-13 | 89 |
neural tube | 1.80e-11 | 56 |
neural rod | 1.80e-11 | 56 |
future spinal cord | 1.80e-11 | 56 |
neural keel | 1.80e-11 | 56 |
structure with developmental contribution from neural crest | 6.27e-11 | 132 |
neural plate | 7.21e-11 | 82 |
presumptive neural plate | 7.21e-11 | 82 |
central nervous system | 1.12e-10 | 81 |
regional part of nervous system | 1.82e-09 | 53 |
regional part of brain | 1.82e-09 | 53 |
organ system subdivision | 4.30e-09 | 223 |
ectoderm-derived structure | 8.56e-09 | 171 |
ectoderm | 8.56e-09 | 171 |
presumptive ectoderm | 8.56e-09 | 171 |
ecto-epithelium | 9.53e-09 | 104 |
brain | 1.29e-07 | 68 |
future brain | 1.29e-07 | 68 |
omentum | 1.55e-07 | 6 |
peritoneum | 1.55e-07 | 6 |
abdominal cavity | 1.55e-07 | 6 |
visceral peritoneum | 1.55e-07 | 6 |
regional part of forebrain | 1.73e-07 | 41 |
forebrain | 1.73e-07 | 41 |
anterior neural tube | 1.73e-07 | 41 |
future forebrain | 1.73e-07 | 41 |
retina | 6.45e-07 | 6 |
photoreceptor array | 6.45e-07 | 6 |
posterior segment of eyeball | 6.45e-07 | 6 |
pre-chordal neural plate | 7.89e-07 | 61 |
cavity lining | 8.60e-07 | 12 |
serous membrane | 8.60e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.12e-09 | 10 |