FFCP PHASE1:Hg19::chr1:111437623..111437636,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:111437623..111437636,+ | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_at_chr1:111437623..111437636,+ | |description=CAGE_peak_at_chr1:111437623..111437636,+ | ||
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|ontology_enrichment_celltype=CL:0002057!7.82e-50!42;CL:0002032!3.44e-48!165;CL:0000837!3.44e-48!165;CL:0000037!3.52e-48!172;CL:0000566!3.52e-48!172;CL:0000988!3.27e-47!182;CL:0002087!5.93e-46!119;CL:0000860!1.14e-45!45;CL:0000738!4.81e-42!140;CL:0002031!7.68e-42!124;CL:0002194!2.76e-40!63;CL:0000576!2.76e-40!63;CL:0000040!2.76e-40!63;CL:0000559!2.76e-40!63;CL:0002009!1.23e-38!65;CL:0000766!2.44e-38!76;CL:0000763!2.92e-38!112;CL:0000049!2.92e-38!112;CL:0000839!8.90e-37!70;CL:0000557!4.55e-36!71;CL:0000134!1.40e-11!358;CL:0002320!5.74e-11!365;CL:0000945!1.66e-10!24;CL:0000826!1.66e-10!24;CL:0000542!3.16e-09!53;CL:0000051!3.16e-09!53;CL:0000219!7.56e-09!390;CL:0000838!1.49e-08!52 | |ontology_enrichment_celltype=CL:0002057!7.82e-50!42;CL:0002032!3.44e-48!165;CL:0000837!3.44e-48!165;CL:0000037!3.52e-48!172;CL:0000566!3.52e-48!172;CL:0000988!3.27e-47!182;CL:0002087!5.93e-46!119;CL:0000860!1.14e-45!45;CL:0000738!4.81e-42!140;CL:0002031!7.68e-42!124;CL:0002194!2.76e-40!63;CL:0000576!2.76e-40!63;CL:0000040!2.76e-40!63;CL:0000559!2.76e-40!63;CL:0002009!1.23e-38!65;CL:0000766!2.44e-38!76;CL:0000763!2.92e-38!112;CL:0000049!2.92e-38!112;CL:0000839!8.90e-37!70;CL:0000557!4.55e-36!71;CL:0000134!1.40e-11!358;CL:0002320!5.74e-11!365;CL:0000945!1.66e-10!24;CL:0000826!1.66e-10!24;CL:0000542!3.16e-09!53;CL:0000051!3.16e-09!53;CL:0000219!7.56e-09!390;CL:0000838!1.49e-08!52 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.38e-88;33!CL:0002057;4.38e-88;33!CL:0000473;1.52e-63;39!CL:0000234;1.52e-63;39!CL:0000576;3.38e-41;48!CL:0000766;4.63e-19;69!CL:0000763;5.13e-15;100!CL:0002087;1.53e-12;104!CL:0000946;6.46e-09;1!CL:0000786;6.46e-09;1!CL:0000738;4.47e-08;136!CL:0000988;1.39e-07;177 | |ontology_enrichment_celltype_v019=CL:0000860;4.38e-88;33!CL:0002057;4.38e-88;33!CL:0000473;1.52e-63;39!CL:0000234;1.52e-63;39!CL:0000576;3.38e-41;48!CL:0000766;4.63e-19;69!CL:0000763;5.13e-15;100!CL:0002087;1.53e-12;104!CL:0000946;6.46e-09;1!CL:0000786;6.46e-09;1!CL:0000738;4.47e-08;136!CL:0000988;1.39e-07;177 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.30e-77,42;CL:0002057,4.30e-77,42;CL:0000473,4.99e-67,48;CL:0000234,4.99e-67,48;CL:0002194,6.27e-53,59;CL:0000576,6.27e-53,59;CL:0000040,6.27e-53,59;CL:0000559,6.27e-53,59;CL:0002009,4.14e-51,61;CL:0000839,4.93e-47,66;CL:0000557,2.73e-46,67;CL:0000766,7.05e-43,72;CL:0000763,1.46e-33,108;CL:0000049,1.46e-33,108;CL:0002087,2.20e-31,115;CL:0002031,6.23e-30,120;CL:0000738,5.42e-26,136;CL:0002032,7.36e-26,161;CL:0000837,7.36e-26,161;CL:0000037,1.26e-24,168;CL:0000988,3.50e-23,177;CL:0000134,1.39e-09,354;CL:0002320,2.57e-09,361;CL:0000946,5.31e-09,1;CL:0000786,5.31e-09,1;CL:0000980,5.31e-09,1;CL:0000219,2.26e-08,386;CL:0000048,3.24e-07,427;CL:0000723,4.68e-07,433;CL:0000034,7.54e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;9.54e-58;42!CL:0000049;6.36e-11;108 | |ontology_enrichment_development_v019=CL:0002057;9.54e-58;42!CL:0000049;6.36e-11;108 | ||
|ontology_enrichment_disease=DOID:2531!5.24e-11!51;DOID:0060083!5.24e-11!51;DOID:0060058!2.30e-09!10;DOID:1240!3.16e-07!39 | |ontology_enrichment_disease=DOID:2531!5.24e-11!51;DOID:0060083!5.24e-11!51;DOID:0060058!2.30e-09!10;DOID:1240!3.16e-07!39 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.54e-40!102;UBERON:0003061!8.54e-40!102;UBERON:0002193!2.47e-36!112;UBERON:0002371!3.93e-32!80;UBERON:0001474!6.20e-29!86;UBERON:0002405!3.14e-26!115;UBERON:0004765!1.24e-22!101;UBERON:0001434!1.24e-22!101;UBERON:0003081!9.72e-12!216;UBERON:0002384!1.26e-10!375;UBERON:0002204!2.13e-09!167;UBERON:0004177!2.69e-07!7 | |ontology_enrichment_uberon=UBERON:0002390!8.54e-40!102;UBERON:0003061!8.54e-40!102;UBERON:0002193!2.47e-36!112;UBERON:0002371!3.93e-32!80;UBERON:0001474!6.20e-29!86;UBERON:0002405!3.14e-26!115;UBERON:0004765!1.24e-22!101;UBERON:0001434!1.24e-22!101;UBERON:0003081!9.72e-12!216;UBERON:0002384!1.26e-10!375;UBERON:0002204!2.13e-09!167;UBERON:0004177!2.69e-07!7 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.82e-40,76;UBERON:0001474,2.77e-37,82;UBERON:0004765,1.08e-33,90;UBERON:0002405,1.67e-32,93;UBERON:0002390,1.11e-30,98;UBERON:0003061,1.11e-30,98;UBERON:0001434,5.32e-30,100;UBERON:0002193,1.56e-27,108;UBERON:0002204,1.43e-16,167;UBERON:0003081,5.52e-13,203;UBERON:0002384,5.96e-09,371;UBERON:0000926,5.02e-07,315;UBERON:0004120,5.02e-07,315;UBERON:0006603,5.02e-07,315 | |||
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|short_description=p@chr1:111437623..111437636,+ | |short_description=p@chr1:111437623..111437636,+ | ||
}} | }} |
Latest revision as of 19:38, 27 July 2015
Short description: | p@chr1:111437623..111437636, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:111437623..111437636, + |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.30e-77 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.30e-77 | 42 |
defensive cell | 4.99e-67 | 48 |
phagocyte | 4.99e-67 | 48 |
monopoietic cell | 6.27e-53 | 59 |
monocyte | 6.27e-53 | 59 |
monoblast | 6.27e-53 | 59 |
promonocyte | 6.27e-53 | 59 |
macrophage dendritic cell progenitor | 4.14e-51 | 61 |
myeloid lineage restricted progenitor cell | 4.93e-47 | 66 |
granulocyte monocyte progenitor cell | 2.73e-46 | 67 |
myeloid leukocyte | 7.05e-43 | 72 |
myeloid cell | 1.46e-33 | 108 |
common myeloid progenitor | 1.46e-33 | 108 |
nongranular leukocyte | 2.20e-31 | 115 |
hematopoietic lineage restricted progenitor cell | 6.23e-30 | 120 |
leukocyte | 5.42e-26 | 136 |
hematopoietic oligopotent progenitor cell | 7.36e-26 | 161 |
hematopoietic multipotent progenitor cell | 7.36e-26 | 161 |
hematopoietic stem cell | 1.26e-24 | 168 |
hematopoietic cell | 3.50e-23 | 177 |
mesenchymal cell | 1.39e-09 | 354 |
connective tissue cell | 2.57e-09 | 361 |
antibody secreting cell | 5.31e-09 | 1 |
plasma cell | 5.31e-09 | 1 |
plasmablast | 5.31e-09 | 1 |
motile cell | 2.26e-08 | 386 |
multi fate stem cell | 3.24e-07 | 427 |
somatic stem cell | 4.68e-07 | 433 |
stem cell | 7.54e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.82e-40 | 76 |
bone element | 2.77e-37 | 82 |
skeletal element | 1.08e-33 | 90 |
immune system | 1.67e-32 | 93 |
hematopoietic system | 1.11e-30 | 98 |
blood island | 1.11e-30 | 98 |
skeletal system | 5.32e-30 | 100 |
hemolymphoid system | 1.56e-27 | 108 |
musculoskeletal system | 1.43e-16 | 167 |
lateral plate mesoderm | 5.52e-13 | 203 |
connective tissue | 5.96e-09 | 371 |
mesoderm | 5.02e-07 | 315 |
mesoderm-derived structure | 5.02e-07 | 315 |
presumptive mesoderm | 5.02e-07 | 315 |