FFCP PHASE1:Hg19::chr22:26878129..26878141,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89781 | |EntrezGene=89781 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=15844 | |HGNC=15844 | ||
|TSSclassifier=strong | |||
|UniProt=Q6P1K3 | |UniProt=Q6P1K3 | ||
|association_with_transcript=-11bp_to_BC065030_5end | |association_with_transcript=-11bp_to_BC065030_5end | ||
|cluster_id=chr22:26878129..26878141,- | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_12_at_HPS4_5end | |description=CAGE_peak_12_at_HPS4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000147!5.53e-13!14;CL:0000148!9.17e-12!10;CL:0000541!9.17e-12!10;CL:0002274!1.79e-10!5;CL:0000457!1.79e-10!5;CL:0002191!1.79e-10!5;CL:0000097!1.79e-10!5;CL:0000831!1.79e-10!5;CL:0002028!1.79e-10!5;CL:0002567!2.14e-08!3;CL:0002619!3.09e-07!3 | |ontology_enrichment_celltype=CL:0000147!5.53e-13!14;CL:0000148!9.17e-12!10;CL:0000541!9.17e-12!10;CL:0002274!1.79e-10!5;CL:0000457!1.79e-10!5;CL:0002191!1.79e-10!5;CL:0000097!1.79e-10!5;CL:0000831!1.79e-10!5;CL:0002028!1.79e-10!5;CL:0002567!2.14e-08!3;CL:0002619!3.09e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.17e-51;10!CL:0000147;1.86e-36;14!CL:0002567;2.54e-32;3!CL:0000710;2.31e-25;20!CL:0000075;1.23e-18;27!CL:0002077;2.35e-17;34!CL:0002566;4.06e-12;1!CL:0000817;1.39e-11;1 | |ontology_enrichment_celltype_v019=CL:0000148;3.17e-51;10!CL:0000147;1.86e-36;14!CL:0002567;2.54e-32;3!CL:0000710;2.31e-25;20!CL:0000075;1.23e-18;27!CL:0002077;2.35e-17;34!CL:0002566;4.06e-12;1!CL:0000817;1.39e-11;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.73e-51,10;CL:0000541,2.73e-51,10;CL:0000147,1.67e-36,14;CL:0002567,2.41e-32,3;CL:0000710,2.15e-25,20;CL:0002077,5.43e-19,34;CL:0000075,1.17e-18,27;CL:0002566,4.06e-12,1;CL:0000333,1.78e-11,41;CL:0000221,3.15e-08,72;CL:0000133,6.95e-08,59 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;5.12e-22;2!DOID:3371;5.05e-12;1!DOID:4549;5.05e-12;1!DOID:5861;5.05e-12;1!DOID:6496;5.05e-12;1 | |ontology_enrichment_disease_v019=DOID:1909;5.12e-22;2!DOID:3371;5.05e-12;1!DOID:4549;5.05e-12;1!DOID:5861;5.05e-12;1!DOID:6496;5.05e-12;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,3.93e-22,2;DOID:3371,4.53e-12,1;DOID:4549,4.53e-12,1;DOID:5861,4.53e-12,1;DOID:6496,4.53e-12,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0001003;8.13e-07;15!UBERON:0007376;8.13e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0001003;8.13e-07;15!UBERON:0007376;8.13e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,7.97e-07,15;UBERON:0007376,7.97e-07,15;UBERON:0007383,7.97e-07,15 | |||
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| ||
|short_description=p12@HPS4 | |short_description=p12@HPS4 | ||
}} | }} |
Latest revision as of 12:50, 19 September 2015
Short description: | p12@HPS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_HPS4_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -11bp_to_BC065030_5end |
EntrezGene: | HPS4 |
HGNC: | 15844 |
UniProt: | Q6P1K3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.73e-51 | 10 |
melanoblast | 2.73e-51 | 10 |
pigment cell | 1.67e-36 | 14 |
light melanocyte | 2.41e-32 | 3 |
neurecto-epithelial cell | 2.15e-25 | 20 |
ecto-epithelial cell | 5.43e-19 | 34 |
columnar/cuboidal epithelial cell | 1.17e-18 | 27 |
dark melanocyte | 4.06e-12 | 1 |
migratory neural crest cell | 1.78e-11 | 41 |
ectodermal cell | 3.15e-08 | 72 |
neurectodermal cell | 6.95e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 7.97e-07 | 15 |
outer epithelium | 7.97e-07 | 15 |
enveloping layer of ectoderm | 7.97e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.93e-22 | 2 |
chondrosarcoma | 4.53e-12 | 1 |
extraosseous chondrosarcoma | 4.53e-12 | 1 |
myxoid chondrosarcoma | 4.53e-12 | 1 |
extraskeletal myxoid chondrosarcoma | 4.53e-12 | 1 |