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MacroAPE 1083:RARA f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;11.09350127307007;19.55671508738457;22.621106778155603;4.716253700384445!2;57.9875768389947;0.0;0.0;0.0!3;0.0;0.0;57.9875768389947;0.0!4;0.0...")
 
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14551!10828-111C9;0.447531!10788-110H5;0.341414!10792-110H9;0.483265!10765-110E9;0.650541!10829-111D1;0.403907!10830-111D2;0.63224!10831-111D3;0.560538!10832-111D4;0.289681!10833-111D5;0.372475!10764-110E8;0.507858!10770-110F5;0.479643!10399-106A3;0.516488!10400-106A4;0.311958!10405-106A9;0.288159!10834-111D6;0.253932!10835-111D7;0.662106!10836-111D8;0.572343!10837-111D9;0.675315!10699-109G6;0.51341!10802-111A1;0.124759!10796-110I4;0.416416!10010-101C1;0.417151!10810-111A9;0.265254!10421-106C7;0.53833!10708-109H6;0.292483!12235-129G3;0.439618!12236-129G4;0.341065!12237-129G5;0.698633!10167-103B5;0.764033!10151-102I7;0.968356!10428-106D5;0.997231!10795-110I3;0.348442!10805-111A4;0.756438!10052-101G7;0.3073!10189-103D9;0.259738!10589-108D4;0.0314837!10425-106D2;0.909055!10427-106D4;0.351572!10702-109G9;0.203979!10432-106D9;0.878352!10496-107C1;0.67266!10718-109I7;0.261991!10011-101C2;0.444319!10053-101G8;0.17549!10686-109F2;0.780151!10084-102B3;0.993535!10012-101C3;0.723793!10085-102B4;0.897016!10482-107A5;0.934533!10419-106C5;0.578707!10080-102A8;0.405796!10760-110E4;0.081428!10709-109H7;0.621724!10710-109H8;0.807148!10703-109H1;0.766816!10719-109I8;0.302945!10642-109A3;0.56384!10177-103C6;0.168219!10164-103B2;0.634194!10173-103C2;0.955026!10166-103B4;0.796608!10083-102B2;0.766372!10188-103D8;0.956676!10552-107I3;0.810289!10553-107I4;0.933814!10013-101C4;0.509385!10536-107G5;0.425019!10618-108G6;0.688898!10423-106C9;0.706098!10785-110H2;0.440469!12238-129G6;0.830506!12239-129G7;0.387922!12240-129G8;0.745228!10416-106C2;0.842805!10801-110I9;0.969358!10766-110F1;0.82241!10824-111C5;0.765603!10825-111C6;0.78251!10826-111C7;0.854421!10454-106G4;0.869824!10409-106B4;0.791356!10638-108I8;0.482735!10636-108I6;0.224874!10513-107D9;0.378738!10420-106C6;0.495133!10082-102B1;0.437926!10014-101C5;0.00333113!10070-101I7;0.00731842!10452-106G2;0.017192!10453-106G3;0.862254!10449-106F8;0.894181!10042-101F6;0.871088!10069-101I6;0.760037!10193-103E4;0.0372743!10631-108I1;0.753926!10438-106E6;0.536417!10488-107B2;0.525947!10196-103E7;0.534383!10071-101I8;0.0458696!10071-101I8;0.164566!10041-101F5;0.51821!10451-106G1;0.959077!10450-106F9;0.248944!10604-108F1;0.364619!10605-108F2;0.293294!10606-108F3;0.572682!10603-108E9;0.30816!10497-107C2;0.4452!10448-106F7;0.556787!10643-109A4;0.219046!10426-106D3;0.959685!10431-106D8;0.340728!10197-103E8;0.502657!10443-106F2;0.0448689!10815-111B5;0.192604!10816-111B6;0.885643!10817-111B7;0.785891!10015-101C6;0.881211!10410-106B5;0.308037!10054-101G9;0.0792371!10758-110E2;0.512966!10711-109H9;0.487437!10040-101F4;0.269892!10470-106I2;0.987308!10415-106C1;0.92665!10198-103E9;0.342897!10614-108G2;0.0559292!10612-108F9;0.339128!10549-107H9;0.724472!10615-108G3;0.113234!10487-107B1;0.983965!10433-106E1;0.936463!10688-109F4;0.485301!10444-106F3;0.772468!10444-106F3;0.834365!10485-107A8;0.881551!10413-106B8;0.132141!10175-103C4;0.521712!10161-103A8;0.719699!12131-128D7;0.834812!10624-108H3;0.344519!10712-109I1;0.388813!10205-103F7;0.851525!10206-103F8;0.0937408!10207-103F9;0.06086!10050-101G5;0.09022!10051-101G6;0.0119853!10016-101C7;0.00264035!10046-101G1;0.00523522!10778-110G4;0.158114!10633-108I3;0.72359!10818-111B8;0.76697!10819-111B9;0.637088!10820-111C1;0.611696!10484-107A7;0.679367!10808-111A7;0.526726!10169-103B7;0.262228!10153-102I9;0.858869!13425-144D5;0.931224!13433-144E4;0.51698!13437-144E8;0.525088!11904-125F5;0.613371!11905-125F6;0.522612!10039-101F3;0.566421!10791-110H8;0.955641!10017-101C8;0.804347!10045-101F9;0.014168!10509-107D5;0.105154!10839-111E2;0.0491891!10692-109F8;0.395904!10079-102A7;0.291896!10078-102A6;0.0553532!10721-110A1;0.0103791!10569-108B2;0.906793!10570-108B3;0.552324!10571-108B4;0.746953!10647-109A8;0.480314!10752-110D5;0.0143014!10782-110G8;0.321548!10726-110A6;0.786537!10018-101C9;0.412242!10086-102B5;3.11953e-06!10182-103D2;0.000114347!10165-103B3;0.627003!10499-107C4;0.745659!10408-106B3;0.446766!10019-101D1;0.821947!10068-101I5;0.433621!10075-102A3;0.963108!10077-102A5;0.262403!10727-110A7;0.885461!10775-110G1;0.589234!10412-106B7;0.464523!12231-129F8;0.0912259!12232-129F9;0.483614!12233-129G1;0.472652!12234-129G2;0.339018!10414-106B9;0.466396!10170-103B8;0.511503!10183-103D3;0.826487!10150-102I6;0.963342!10174-103C3;0.978411!10155-103A2;0.646711!10038-101F2;0.662729!10838-111E1;0.618272!10759-110E3;0.116934!10514-107E1;0.805348!10465-106H6;0.519453!10691-109F7;0.686939!10843-111E6;0.451518!10844-111E7;0.171031!11747-123G1;0.49693!11748-123G2;0.579135!11749-123G3;0.731483!11750-123G4;0.462887!11751-123G5;0.0853653!11840-124H4;0.210129!11752-123G6;0.264115!11753-123G7;0.661792!11754-123G8;0.490076!11755-123G9;0.685186!11756-123H1;0.729303!11833-124G6;0.382134!11760-123H5;0.719317!11836-124G9;0.219785!11758-123H3;0.694663!11835-124G8;0.73981!11762-123H7;0.932517!11838-124H2;0.404605!11757-123H2;0.517004!11759-123H4;0.416406!11761-123H6;0.741086!11842-124H6;0.535968!11837-124H1;0.800097!10568-108B1;0.752827!13230-141I8;0.981552!13231-141I9;0.996056!10696-109G3;0.818313!10493-107B7;0.573303!10494-107B8;0.263264!10850-111F4;0.711902!10851-111F5;0.718612!10852-111F6;0.249164!10853-111F7;0.180349!10854-111F8;0.0691457!10855-111F9;0.0723412!10856-111G1;0.558023!10847-111F1;0.504151!10846-111E9;0.456171!10848-111F2;0.422012!10845-111E8;0.35001!10857-111G2;0.913136!10858-111G3;0.458792!10156-103A3;0.894242!11901-125F2;0.927649!11902-125F3;0.430099!11903-125F4;0.422831!10689-109F5;0.590249!10648-109A9;0.435151!10784-110H1;0.364583!10744-110C6;0.478892!10772-110F7;0.593912!10474-106I6;0.16283!10600-108E6;0.695992!10684-109E9;0.493406!12226-129F3;0.857482!12227-129F4;0.843404!10508-107D4;0.738929!10539-107G8;0.212735!10607-108F4;0.719964!10555-107I6;0.412725!10774-110F9;0.593869!10637-108I7;0.323782!10663-109C6;0.236523!10728-110A8;0.0830091!10729-110A9;0.0810805!10430-106D7;0.65696!10730-110B1;0.467816!10813-111B3;0.154016!10812-111B2;0.748951!10037-101F1;0.462908!10172-103C1;0.935716!10163-103B1;0.831141!10076-102A4;0.981217!10073-102A1;0.885869!10036-101E9;0.694092!10195-103E6;0.83387!10277-104E7;0.897945!10434-106E2;0.24235!10550-107I1;0.21511!10545-107H5;0.943186!10544-107H4;0.259942!10704-109H2;0.250305!10510-107D6;0.601039!10558-107I9;0.0565484!10020-101D2;0.495223!10732-110B3;0.243347!10049-101G4;0.971237!10698-109G5;0.208716!10437-106E5;0.470523!10417-106C3;0.18646!10035-101E8;0.680782!10171-103B9;0.937467!10157-103A4;0.800966!10034-101E7;0.993256!10072-101I9;0.881845!10199-103F1;0.537814!10200-103F2;0.251626!10697-109G4;0.144957!10723-110A3;0.480474!10179-103C8;0.978656!10160-103A7;0.613992!10180-103C9;0.947037!10162-103A9;0.950213!10021-101D3;0.942996!10840-111E3;0.872134!10706-109H4;0.479176!10033-101E6;0.569404!10032-101E5;0.772752!10490-107B4;0.842795!10439-106E7;0.653483!10022-101D4;0.615975!10176-103C5;0.220789!10469-106I1;0.945047!10067-101I4;0.74092!10411-106B6;0.642865!10471-106I3;0.306292!10030-101E3;0.0588628!10475-106I7;0.40554!10787-110H4;0.353094!10477-106I9;0.601858!10695-109G2;0.571503!11771-123I7;0.258786!11772-123I8;0.0122112!11773-123I9;0.0177428!10093-102C3;0.041249!10442-106F1;0.247961!10442-106F1;0.498424!10201-103F3;0.579617!10639-108I9;0.0566618!11843-124H7;0.31011!11841-124H5;0.0903656!10693-109F9;0.0578116!10436-106E4;0.380746!10483-107A6;0.746937!10282-104F3;0.560196!10023-101D5;0.00937114!10066-101I3;0.0169822!10065-101I2;0.321627!10800-110I8;0.362459!10610-108F7;0.686736!10841-111E4;0.886339!10541-107H1;0.354724!10842-111E5;0.419672!10562-108A4;0.216003!10024-101D6;0.678492!10064-101I1;0.00690027!10609-108F6;0.17212!10048-101G3;0.305299!10781-110G7;0.251139!10181-103D1;0.476269!10159-103A6;0.551929!10056-101H2;0.688017!10737-110B8;0.652974!10025-101D7;0.692999!10044-101F8;0.578804!10424-106D1;0.721413!10463-106H4;0.465262!10616-108G4;0.438972!10486-107A9;0.147555!10062-101H8;0.585681!10202-103F4;0.214921!10158-103A5;0.180248!10441-106E9;0.663819!10031-101E4;0.421898!10063-101H9;0.822822!10063-101H9;0.513088!11763-123H8;0.23296!11765-123I1;0.927404!11768-123I4;0.292847!10807-111A6;0.724946!10790-110H7;0.474971!10798-110I6;0.358195!10786-110H3;0.122508!10591-108D6;0.545614!10593-108D8;0.231064!10590-108D5;0.288701!10026-101D8;0.698106!10096-102C6;0.0157952!10168-103B6;0.274836!10154-103A1;0.538367!10209-103G2;0.90009!10061-101H7;0.115059!10027-101D9;0.507287!10043-101F7;0.821513!10783-110G9;0.931768!10028-101E1;0.0679789!10060-101H6;0.434241!10203-103F5;0.275377!10059-101H5;0.0767454!10047-101G2;0.0856068!10029-101E2;0.259659!10058-101H4;0.172893!10418-106C4;0.297386!10492-107B6;0.483856!10694-109G1;0.0938176!10797-110I5;0.664064!10057-101H3;0.652424!10100-102D1;0.105071!10055-101H1;0.358873!10204-103F6;0.661569!10191-103E2;0.138811!10563-108A5;0.112706
|name=RARA_f1
|name=RARA_f1
|tomtom_result=RXR::RAR_DR5#MA0159.1;10;3.75373e-05;0.0178677;0.0258198;7;GAGGTCA;AGGTCATGGAGAGGTCA;+!RORA_1#MA0071.1;3;7.51396e-05;0.0357665;0.0258198;7;GAGGTCA;ATCAAGGTCA;+!NR4A2#MA0160.1;0;8.29026e-05;0.0394616;0.0258198;7;GAGGTCA;AAGGTCAC;+!ESR1#MA0112.2;4;0.000207565;0.0988011;0.0435101;7;GAGGTCA;GGCCCAGGTCACCCTGACCT;+!ESR2#MA0258.1;0;0.000251598;0.119761;0.0435101;7;GAGGTCA;CAGGTCACCGTGACCTTG;-!ESR1#MA0112.2;1;0.000279405;0.132997;0.0435101;7;GAGGTCA;CCAGGTCACCGTGACCCC;+!NR1H2::RXRA#MA0115.1;1;0.000527749;0.251208;0.0704426;7;GAGGTCA;AAAGGTCAAAGGTCAAC;+!Esrrb#MA0141.1;5;0.000648864;0.308859;0.0757827;7;GAGGTCA;AGCTCAAGGTCA;+!PPARG::RXRA#MA0065.2;8;0.000758351;0.360975;0.078729;7;GAGGTCA;GTAGGGCAAAGGTCA;+!PPARG::RXRA#MA0065.2;3;0.00162121;0.771698;0.126231;7;GAGGTCA;CTAGGGGTCAAAGGTCATCG;+!NR2F1#MA0017.1;7;0.00257667;1.22649;0.185192;7;GAGGTCA;AGGTTCAAAGGTCA;-!CREB1#MA0018.2;1;0.00294631;1.40244;0.196633;7;GAGGTCA;TGACGTCA;+!RORA_2#MA0072.1;6;0.00322306;1.53418;0.200763;7;GAGGTCA;TATAAGTAGGTCAA;+!HNF4A#MA0114.1;6;0.0046296;2.20369;0.240313;7;GAGGTCA;AGGCCAAAGGTCA;+!bZIP910#MA0096.1;-1;0.00515903;2.4557;0.243571;6;GAGGTCA;ACGTCAT;-!RXRA::VDR#MA0074.1;-1;0.00521373;2.48174;0.243571;6;GAGGTCA;GGGTCAACGAGTTCA;+!ZAP1#MA0440.1;6;0.0061139;2.91021;0.269466;7;GAGGTCA;ACCTTAAAGGTCATG;+!PPARG#MA0066.1;1;0.00634483;3.02014;0.269466;7;GAGGTCA;GTAGGTCACGGTGACCTACT;+!TGA1A#MA0129.1;0;0.00718569;3.42039;0.282382;7;GAGGTCA;TACGTCA;+!usp#MA0016.1;0;0.0072534;3.45262;0.282382;7;GAGGTCA;GGGGTCACGG;+!CST6#MA0286.1;1;0.00803937;3.82674;0.300461;7;GAGGTCA;TTACGTCAT;-!CREB1#MA0018.2;0;0.00958928;4.5645;0.335082;7;GAGGTCA;GACGTCACCAGG;-!bZIP911#MA0097.1;3;0.0161822;7.70273;0.539991;7;GAGGTCA;GGCCACGTCATC;-!hth#MA0227.1;-1;0.0187441;8.92218;0.603911;6;GAGGTCA;CTGTCA;-!tll#MA0459.1;1;0.021;9.99598;0.654039;7;GAGGTCA;AAAAGTCAAA;+
}}
}}

Latest revision as of 14:46, 7 September 2012

Full Name: RARA_f1

Motif matrix
POACGT
111.0935012730700719.5567150873845722.6211067781556034.716253700384445
257.98757683899470.00.00.0
30.00.057.98757683899470.0
40.00.057.98757683899470.0
50.00.00.057.9875768389947
60.057.98757683899470.00.0
757.98757683899470.00.00.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RXR::RAR_DR5#MA0159.1103.75373e-050.01786770.02581987GAGGTCAAGGTCATGGAGAGGTCA+
RORA_1#MA0071.137.51396e-050.03576650.02581987GAGGTCAATCAAGGTCA+
NR4A2#MA0160.108.29026e-050.03946160.02581987GAGGTCAAAGGTCAC+
ESR1#MA0112.240.0002075650.09880110.04351017GAGGTCAGGCCCAGGTCACCCTGACCT+
ESR2#MA0258.100.0002515980.1197610.04351017GAGGTCACAGGTCACCGTGACCTTG-
ESR1#MA0112.210.0002794050.1329970.04351017GAGGTCACCAGGTCACCGTGACCCC+
NR1H2::RXRA#MA0115.110.0005277490.2512080.07044267GAGGTCAAAAGGTCAAAGGTCAAC+
Esrrb#MA0141.150.0006488640.3088590.07578277GAGGTCAAGCTCAAGGTCA+
PPARG::RXRA#MA0065.280.0007583510.3609750.0787297GAGGTCAGTAGGGCAAAGGTCA+
PPARG::RXRA#MA0065.230.001621210.7716980.1262317GAGGTCACTAGGGGTCAAAGGTCATCG+
NR2F1#MA0017.170.002576671.226490.1851927GAGGTCAAGGTTCAAAGGTCA-
CREB1#MA0018.210.002946311.402440.1966337GAGGTCATGACGTCA+
RORA_2#MA0072.160.003223061.534180.2007637GAGGTCATATAAGTAGGTCAA+
HNF4A#MA0114.160.00462962.203690.2403137GAGGTCAAGGCCAAAGGTCA+
bZIP910#MA0096.1-10.005159032.45570.2435716GAGGTCAACGTCAT-
RXRA::VDR#MA0074.1-10.005213732.481740.2435716GAGGTCAGGGTCAACGAGTTCA+
ZAP1#MA0440.160.00611392.910210.2694667GAGGTCAACCTTAAAGGTCATG+
PPARG#MA0066.110.006344833.020140.2694667GAGGTCAGTAGGTCACGGTGACCTACT+
TGA1A#MA0129.100.007185693.420390.2823827GAGGTCATACGTCA+
usp#MA0016.100.00725343.452620.2823827GAGGTCAGGGGTCACGG+
CST6#MA0286.110.008039373.826740.3004617GAGGTCATTACGTCAT-
CREB1#MA0018.200.009589284.56450.3350827GAGGTCAGACGTCACCAGG-
bZIP911#MA0097.130.01618227.702730.5399917GAGGTCAGGCCACGTCATC-
hth#MA0227.1-10.01874418.922180.6039116GAGGTCACTGTCA-
tll#MA0459.110.0219.995980.6540397GAGGTCAAAAAGTCAAA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:RARA_f1&oldid=2134484"