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MacroAPE 1083:Motif CCNGGA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;244;0;0!02;0;244;0;0!03;0;0;0;244!04;0;0;244;0!05;0;0;244;0!06;244;0;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.670461!11327-117E4;...")
 
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88-110H5;0.373259!10792-110H9;0.285381!10765-110E9;0.269324!10829-111D1;0.170438!10830-111D2;0.217726!10831-111D3;0.455114!10832-111D4;0.348039!10833-111D5;0.146475!10764-110E8;0.187083!10770-110F5;0.142311!10399-106A3;0.0584501!10400-106A4;0.111466!10405-106A9;0.149202!10834-111D6;0.0973816!10835-111D7;0.125452!10836-111D8;0.918517!10837-111D9;0.417462!10699-109G6;0.272955!10802-111A1;0.487709!10796-110I4;0.766272!10010-101C1;0.746796!10810-111A9;0.691697!10421-106C7;0.149493!10708-109H6;0.585173!12235-129G3;0.191834!12236-129G4;0.41905!12237-129G5;0.774043!10167-103B5;0.544498!10151-102I7;0.948016!10428-106D5;0.862761!10795-110I3;0.636567!10805-111A4;0.983093!10052-101G7;0.273277!10189-103D9;0.490043!10589-108D4;0.936626!10425-106D2;0.240329!10427-106D4;0.398094!10702-109G9;0.460145!10432-106D9;0.354892!10496-107C1;0.814976!10718-109I7;0.347698!10011-101C2;0.270088!10053-101G8;0.531174!10686-109F2;0.20816!10084-102B3;0.27444!10012-101C3;0.727646!10085-102B4;0.811748!10482-107A5;0.800231!10419-106C5;0.660045!10080-102A8;0.806055!10760-110E4;0.955762!10709-109H7;0.938321!10710-109H8;0.623878!10703-109H1;0.88694!10719-109I8;0.14509!10642-109A3;0.154316!10177-103C6;0.0120467!10164-103B2;0.934057!10173-103C2;0.791049!10166-103B4;0.79335!10083-102B2;0.94551!10188-103D8;0.982523!10552-107I3;0.774573!10553-107I4;0.75155!10013-101C4;0.933798!10536-107G5;0.420172!10618-108G6;0.151159!10423-106C9;0.559265!10785-110H2;0.579885!12238-129G6;0.531683!12239-129G7;0.363715!12240-129G8;0.998452!10416-106C2;0.418994!10801-110I9;0.186889!10766-110F1;0.840999!10824-111C5;0.671915!10825-111C6;0.89227!10826-111C7;0.8709!10454-106G4;0.789135!10409-106B4;0.832883!10638-108I8;0.457796!10636-108I6;0.906635!10513-107D9;0.548651!10420-106C6;0.339668!10082-102B1;0.377931!10014-101C5;0.954944!10070-101I7;0.375496!10452-106G2;0.8342!10453-106G3;0.0990017!10449-106F8;0.114875!10042-101F6;0.126948!10069-101I6;0.638351!10193-103E4;0.220756!10631-108I1;0.736687!10438-106E6;0.188119!10488-107B2;0.843794!10196-103E7;0.630012!10071-101I8;0.931666!10071-101I8;0.777294!10041-101F5;0.831665!10451-106G1;0.343267!10450-106F9;0.481263!10604-108F1;0.155691!10605-108F2;0.334574!10606-108F3;0.830466!10603-108E9;0.57514!10497-107C2;0.542886!10448-106F7;0.748857!10643-109A4;0.708458!10426-106D3;0.942125!10431-106D8;0.720152!10197-103E8;0.902603!10443-106F2;0.368783!10815-111B5;0.754689!10816-111B6;0.615522!10817-111B7;0.675588!10015-101C6;0.56298!10410-106B5;0.272594!10054-101G9;0.311783!10758-110E2;0.698136!10711-109H9;0.911358!10040-101F4;0.547905!10470-106I2;0.901887!10415-106C1;0.800982!10198-103E9;0.498663!10614-108G2;0.196977!10612-108F9;0.960004!10549-107H9;0.982393!10615-108G3;0.342735!10487-107B1;0.322328!10433-106E1;0.803275!10688-109F4;0.875488!10444-106F3;0.92983!10444-106F3;0.320169!10485-107A8;0.283021!10413-106B8;0.0722484!10175-103C4;0.583475!10161-103A8;0.819722!12131-128D7;0.822459!10624-108H3;0.259647!10712-109I1;0.512045!10205-103F7;0.404097!10206-103F8;0.374578!10207-103F9;0.389718!10050-101G5;0.234858!10051-101G6;0.13591!10016-101C7;0.379853!10046-101G1;0.412352!10778-110G4;0.650099!10633-108I3;0.863888!10818-111B8;0.289753!10819-111B9;0.41207!10820-111C1;0.462737!10484-107A7;0.407243!10808-111A7;0.428576!10169-103B7;0.216712!10153-102I9;0.904766!13425-144D5;0.819082!13433-144E4;0.197942!13437-144E8;0.14638!11904-125F5;0.175981!11905-125F6;0.828124!10039-101F3;0.882161!10791-110H8;0.883908!10017-101C8;0.679173!10045-101F9;0.863883!10509-107D5;0.912117!10839-111E2;0.43719!10692-109F8;0.37042!10079-102A7;0.707075!10078-102A6;0.49391!10721-110A1;0.538285!10569-108B2;0.55708!10570-108B3;0.357496!10571-108B4;0.490517!10647-109A8;0.544068!10752-110D5;0.619965!10782-110G8;0.952617!10726-110A6;0.581825!10018-101C9;0.286787!10086-102B5;0.53612!10182-103D2;0.942938!10165-103B3;0.962484!10499-107C4;0.813743!10408-106B3;0.54062!10019-101D1;0.951123!10068-101I5;0.41598!10075-102A3;0.388102!10077-102A5;0.692115!10727-110A7;0.0378687!10775-110G1;0.518093!10412-106B7;0.376694!12231-129F8;0.775492!12232-129F9;0.922333!12233-129G1;0.855391!12234-129G2;0.74858!10414-106B9;0.614305!10170-103B8;0.954575!10183-103D3;0.908693!10150-102I6;0.872743!10174-103C3;0.90974!10155-103A2;0.871779!10038-101F2;0.750423!10838-111E1;0.673678!10759-110E3;0.218509!10514-107E1;0.207424!10465-106H6;0.989676!10691-109F7;0.516513!10843-111E6;0.561308!10844-111E7;0.140876!11747-123G1;0.104374!11748-123G2;0.987581!11749-123G3;0.604239!11750-123G4;0.77054!11751-123G5;0.396085!11840-124H4;0.422401!11752-123G6;0.499787!11753-123G7;0.274673!11754-123G8;0.381526!11755-123G9;0.39814!11756-123H1;0.340332!11833-124G6;0.674631!11760-123H5;0.617732!11836-124G9;0.912602!11758-123H3;0.455035!11835-124G8;0.629975!11762-123H7;0.790028!11838-124H2;0.880746!11757-123H2;0.913982!11759-123H4;0.771956!11761-123H6;0.446445!11842-124H6;0.589605!11837-124H1;0.291474!10568-108B1;0.580054!13230-141I8;0.866355!13231-141I9;0.53162!10696-109G3;0.385447!10493-107B7;0.938173!10494-107B8;0.664703!10850-111F4;0.992682!10851-111F5;0.771488!10852-111F6;0.484625!10853-111F7;0.683408!10854-111F8;0.44758!10855-111F9;0.959684!10856-111G1;0.620712!10847-111F1;0.776298!10846-111E9;0.56854!10848-111F2;0.903861!10845-111E8;0.658973!10857-111G2;0.823389!10858-111G3;0.415054!10156-103A3;0.813951!11901-125F2;0.917237!11902-125F3;0.577248!11903-125F4;0.611728!10689-109F5;0.73293!10648-109A9;0.580413!10784-110H1;0.841612!10744-110C6;0.905312!10772-110F7;0.259512!10474-106I6;0.188197!10600-108E6;0.880625!10684-109E9;0.716678!12226-129F3;0.232713!12227-129F4;0.556356!10508-107D4;0.259776!10539-107G8;0.0455617!10607-108F4;0.273667!10555-107I6;0.192964!10774-110F9;0.042694!10637-108I7;0.180823!10663-109C6;0.114726!10728-110A8;0.15225!10729-110A9;0.454163!10430-106D7;0.56707!10730-110B1;0.154189!10813-111B3;0.552413!10812-111B2;0.115863!10037-101F1;0.527156!10172-103C1;0.797559!10163-103B1;0.935633!10076-102A4;0.865562!10073-102A1;0.892686!10036-101E9;0.755918!10195-103E6;0.878809!10277-104E7;0.782995!10434-106E2;0.817647!10550-107I1;0.702983!10545-107H5;0.544291!10544-107H4;0.714644!10704-109H2;0.75245!10510-107D6;0.347018!10558-107I9;0.0761173!10020-101D2;0.464841!10732-110B3;0.478113!10049-101G4;0.965818!10698-109G5;0.732328!10437-106E5;0.48216!10417-106C3;0.382487!10035-101E8;0.433769!10171-103B9;0.862435!10157-103A4;0.88785!10034-101E7;0.937209!10072-101I9;0.859763!10199-103F1;0.75983!10200-103F2;0.359402!10697-109G4;0.166507!10723-110A3;0.191558!10179-103C8;0.256826!10160-103A7;0.986815!10180-103C9;0.967233!10162-103A9;0.95902!10021-101D3;0.938851!10840-111E3;0.743332!10706-109H4;0.288103!10033-101E6;0.496334!10032-101E5;0.819172!10490-107B4;0.837172!10439-106E7;0.680909!10022-101D4;0.812479!10176-103C5;0.494399!10469-106I1;0.815281!10067-101I4;0.801372!10411-106B6;0.982737!10471-106I3;0.835627!10030-101E3;0.768576!10475-106I7;0.825163!10787-110H4;0.133323!10477-106I9;0.500974!10695-109G2;0.00793554!11771-123I7;0.759996!11772-123I8;0.0876486!11773-123I9;0.200204!10093-102C3;0.46199!10442-106F1;0.126405!10442-106F1;0.440489!10201-103F3;0.369826!10639-108I9;0.85376!11843-124H7;0.545694!11841-124H5;0.960648!10693-109F9;0.732947!10436-106E4;0.601587!10483-107A6;0.640692!10282-104F3;0.610271!10023-101D5;0.130568!10066-101I3;0.21634!10065-101I2;0.315596!10800-110I8;0.242327!10610-108F7;0.135005!10841-111E4;0.0272917!10541-107H1;0.0423392!10842-111E5;0.25464!10562-108A4;0.105296!10024-101D6;0.496487!10064-101I1;0.264489!10609-108F6;0.879908!10048-101G3;0.699627!10781-110G7;0.446272!10181-103D1;0.849866!10159-103A6;0.771801!10056-101H2;0.716532!10737-110B8;0.800558!10025-101D7;0.495321!10044-101F8;0.0833418!10424-106D1;0.822426!10463-106H4;0.645744!10616-108G4;0.670952!10486-107A9;0.348326!10062-101H8;0.786903!10202-103F4;0.413825!10158-103A5;0.258799!10441-106E9;0.69748!10031-101E4;0.248903!10063-101H9;0.808211!10063-101H9;0.876642!11763-123H8;0.476176!11765-123I1;0.214733!11768-123I4;0.273862!10807-111A6;0.148556!10790-110H7;0.157706!10798-110I6;0.203575!10786-110H3;0.954735!10591-108D6;0.387632!10593-108D8;0.294722!10590-108D5;0.940658!10026-101D8;0.409619!10096-102C6;0.984834!10168-103B6;0.284227!10154-103A1;0.8452!10209-103G2;0.799606!10061-101H7;0.16648!10027-101D9;0.406529!10043-101F7;0.143632!10783-110G9;0.21282!10028-101E1;0.375576!10060-101H6;0.244664!10203-103F5;0.41845!10059-101H5;0.108267!10047-101G2;0.161385!10029-101E2;0.368083!10058-101H4;0.165952!10418-106C4;0.105461!10492-107B6;0.373533!10694-109G1;0.521784!10797-110I5;0.969186!10057-101H3;0.736046!10100-102D1;0.25075!10055-101H1;0.464592!10204-103F6;0.79674!10191-103E2;0.787383!10563-108A5;0.773433
|name=motif_CCNGGA
|name=motif_CCNGGA
|tomtom_result=Stat3#MA0144.1;3;0.00026238;0.124893;0.249786;6;CCTGGA;CTTCCTGGAA;-!STAT1#MA0137.2;5;0.00265054;1.26166;0.841104;6;CCTGGA;CATTTCCCGGAAACC;+!PUT3#MA0358.1;1;0.00901814;4.29263;1;6;CCTGGA;CCCGGGAA;+!EBF1#MA0154.1;2;0.0117207;5.57907;1;6;CCTGGA;TCCCTTGGGT;-!REST#MA0138.2;7;0.0174854;8.32305;1;6;CCTGGA;TCAGCACCATGGACAGCGC;-!REST#MA0138.2;8;0.0176669;8.40945;1;6;CCTGGA;TTCAGCACCATGGACAGCGCC;+!RORA_1#MA0071.1;3;0.0180777;8.60499;1;6;CCTGGA;TGACCTTGAT;-!REI1#MA0364.1;2;0.0187303;8.91564;1;5;CCTGGA;CCCCTGA;+
}}
}}

Latest revision as of 13:13, 7 September 2012

Full Name: motif_CCNGGA

Motif matrix
POACGT
01024400
02024400
03000244
04002440
05002440
06244000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Stat3#MA0144.130.000262380.1248930.2497866CCTGGACTTCCTGGAA-
STAT1#MA0137.250.002650541.261660.8411046CCTGGACATTTCCCGGAAACC+
PUT3#MA0358.110.009018144.2926316CCTGGACCCGGGAA+
EBF1#MA0154.120.01172075.5790716CCTGGATCCCTTGGGT-
REST#MA0138.270.01748548.3230516CCTGGATCAGCACCATGGACAGCGC-
REST#MA0138.280.01766698.4094516CCTGGATTCAGCACCATGGACAGCGCC+
RORA_1#MA0071.130.01807778.6049916CCTGGATGACCTTGAT-
REI1#MA0364.120.01873038.9156415CCTGGACCCCTGA+
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