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MacroAPE 1083:Motif CNGATT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;384;0;0!02;96;96;96;96!03;0;0;384;0!04;384;0;0;0!05;0;0;0;384!06;0;0;0;384 |macroape_1083_sample_pvalues=11376-118A8;0.0200027!11327-117...")
 
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7-108E3;0.17623!10717-109I6;0.641699!10455-106G5;0.0661159!10534-107G3;0.472836!10429-106D6;0.397676!10464-106H5;0.210838!10827-111C8;0.641582!10789-110H6;0.865394!10828-111C9;0.588726!10788-110H5;0.651867!10792-110H9;0.932953!10765-110E9;0.616882!10829-111D1;0.584841!10830-111D2;0.97176!10831-111D3;0.554122!10832-111D4;0.517753!10833-111D5;0.8748!10764-110E8;0.983099!10770-110F5;0.853762!10399-106A3;0.912371!10400-106A4;0.931976!10405-106A9;0.95879!10834-111D6;0.867033!10835-111D7;0.761045!10836-111D8;0.638148!10837-111D9;0.245035!10699-109G6;0.513961!10802-111A1;0.858479!10796-110I4;0.944687!10010-101C1;0.642176!10810-111A9;0.21988!10421-106C7;0.396116!10708-109H6;0.101415!12235-129G3;0.31893!12236-129G4;0.549127!12237-129G5;0.0057947!10167-103B5;0.591982!10151-102I7;0.299419!10428-106D5;0.253757!10795-110I3;0.414344!10805-111A4;0.639165!10052-101G7;0.0647068!10189-103D9;0.555693!10589-108D4;0.764476!10425-106D2;0.423111!10427-106D4;0.0735913!10702-109G9;0.7948!10432-106D9;0.208539!10496-107C1;0.270818!10718-109I7;0.814821!10011-101C2;0.602052!10053-101G8;0.758967!10686-109F2;0.141111!10084-102B3;0.698128!10012-101C3;0.569035!10085-102B4;0.239085!10482-107A5;0.38975!10419-106C5;0.834681!10080-102A8;0.209237!10760-110E4;0.377134!10709-109H7;0.599512!10710-109H8;0.773425!10703-109H1;0.553006!10719-109I8;0.000330968!10642-109A3;0.0347507!10177-103C6;0.0393889!10164-103B2;0.343927!10173-103C2;0.28313!10166-103B4;0.25481!10083-102B2;0.197272!10188-103D8;0.419373!10552-107I3;0.211899!10553-107I4;0.999704!10013-101C4;0.0371617!10536-107G5;0.860867!10618-108G6;0.718531!10423-106C9;0.337582!10785-110H2;0.34267!12238-129G6;0.132966!12239-129G7;0.91029!12240-129G8;0.817769!10416-106C2;0.512674!10801-110I9;0.366875!10766-110F1;0.794054!10824-111C5;0.546666!10825-111C6;0.818521!10826-111C7;0.847807!10454-106G4;0.809314!10409-106B4;0.899575!10638-108I8;0.534884!10636-108I6;0.564676!10513-107D9;0.352377!10420-106C6;0.0275217!10082-102B1;0.327877!10014-101C5;0.99894!10070-101I7;0.801699!10452-106G2;0.965116!10453-106G3;0.00935563!10449-106F8;0.0165103!10042-101F6;0.0110701!10069-101I6;0.343765!10193-103E4;0.562423!10631-108I1;0.403336!10438-106E6;0.44176!10488-107B2;0.216918!10196-103E7;0.963645!10071-101I8;0.671626!10071-101I8;0.816341!10041-101F5;0.142327!10451-106G1;0.595206!10450-106F9;0.00937792!10604-108F1;0.0351726!10605-108F2;0.950807!10606-108F3;0.175487!10603-108E9;0.355575!10497-107C2;0.310462!10448-106F7;0.619045!10643-109A4;0.786201!10426-106D3;0.821811!10431-106D8;0.454944!10197-103E8;0.371825!10443-106F2;0.476433!10815-111B5;0.0199251!10816-111B6;0.523184!10817-111B7;0.371026!10015-101C6;0.626025!10410-106B5;0.94406!10054-101G9;0.625879!10758-110E2;0.470042!10711-109H9;0.0214698!10040-101F4;0.334718!10470-106I2;0.289279!10415-106C1;0.0181252!10198-103E9;0.30364!10614-108G2;0.656279!10612-108F9;0.601547!10549-107H9;0.669298!10615-108G3;0.00698833!10487-107B1;0.451564!10433-106E1;0.776761!10688-109F4;0.475276!10444-106F3;0.719091!10444-106F3;0.523243!10485-107A8;0.441393!10413-106B8;0.00602587!10175-103C4;0.363522!10161-103A8;0.402299!12131-128D7;0.331098!10624-108H3;0.481241!10712-109I1;0.808293!10205-103F7;0.901913!10206-103F8;0.851345!10207-103F9;0.577351!10050-101G5;0.42957!10051-101G6;0.88061!10016-101C7;0.558426!10046-101G1;0.686847!10778-110G4;0.434008!10633-108I3;0.165355!10818-111B8;0.0090581!10819-111B9;0.531494!10820-111C1;0.493235!10484-107A7;0.421261!10808-111A7;0.347887!10169-103B7;0.141639!10153-102I9;0.322554!13425-144D5;0.278414!13433-144E4;3.46042e-09!13437-144E8;7.79648e-07!11904-125F5;1.02611e-06!11905-125F6;0.292088!10039-101F3;0.195604!10791-110H8;0.329201!10017-101C8;0.595127!10045-101F9;0.315638!10509-107D5;0.514467!10839-111E2;0.312395!10692-109F8;0.423996!10079-102A7;0.29738!10078-102A6;0.530015!10721-110A1;0.441763!10569-108B2;0.765377!10570-108B3;0.707336!10571-108B4;0.160267!10647-109A8;0.86546!10752-110D5;0.00362639!10782-110G8;0.610088!10726-110A6;0.790502!10018-101C9;0.422574!10086-102B5;0.0352633!10182-103D2;0.626646!10165-103B3;0.29113!10499-107C4;0.309306!10408-106B3;0.81581!10019-101D1;0.510343!10068-101I5;0.801759!10075-102A3;0.920073!10077-102A5;0.114836!10727-110A7;0.0258799!10775-110G1;0.58718!10412-106B7;0.454008!12231-129F8;0.614078!12232-129F9;0.179649!12233-129G1;0.140629!12234-129G2;0.125989!10414-106B9;0.111723!10170-103B8;0.0296853!10183-103D3;0.273398!10150-102I6;0.292392!10174-103C3;0.207327!10155-103A2;0.430452!10038-101F2;0.213096!10838-111E1;0.282012!10759-110E3;0.112769!10514-107E1;0.143302!10465-106H6;0.588284!10691-109F7;0.721365!10843-111E6;0.0336152!10844-111E7;0.000927847!11747-123G1;0.00377601!11748-123G2;0.887391!11749-123G3;0.959765!11750-123G4;0.50123!11751-123G5;0.366495!11840-124H4;0.110477!11752-123G6;0.0549023!11753-123G7;0.211099!11754-123G8;0.512235!11755-123G9;0.567297!11756-123H1;0.986171!11833-124G6;0.626767!11760-123H5;0.0432177!11836-124G9;0.934276!11758-123H3;0.554694!11835-124G8;0.246701!11762-123H7;0.0889721!11838-124H2;0.193967!11757-123H2;0.119629!11759-123H4;0.240044!11761-123H6;0.181734!11842-124H6;0.972668!11837-124H1;0.190842!10568-108B1;0.0719783!13230-141I8;0.0450328!13231-141I9;0.953417!10696-109G3;0.85075!10493-107B7;0.414129!10494-107B8;0.755945!10850-111F4;0.134095!10851-111F5;0.541783!10852-111F6;0.286199!10853-111F7;0.106969!10854-111F8;0.334024!10855-111F9;0.0784419!10856-111G1;0.000924418!10847-111F1;0.599902!10846-111E9;0.0425004!10848-111F2;0.672898!10845-111E8;0.23793!10857-111G2;0.476958!10858-111G3;0.512542!10156-103A3;0.322439!11901-125F2;0.224168!11902-125F3;0.566542!11903-125F4;0.181179!10689-109F5;0.140963!10648-109A9;0.825365!10784-110H1;0.920439!10744-110C6;0.873774!10772-110F7;0.926142!10474-106I6;0.845016!10600-108E6;0.903774!10684-109E9;0.122125!12226-129F3;0.180232!12227-129F4;0.14258!10508-107D4;0.366887!10539-107G8;0.00177309!10607-108F4;4.93753e-05!10555-107I6;0.0131382!10774-110F9;0.000420055!10637-108I7;0.400195!10663-109C6;0.0337644!10728-110A8;0.0206725!10729-110A9;0.333528!10430-106D7;0.223785!10730-110B1;0.250953!10813-111B3;0.0233049!10812-111B2;0.255898!10037-101F1;0.0755634!10172-103C1;0.333414!10163-103B1;0.145392!10076-102A4;0.25327!10073-102A1;0.437441!10036-101E9;0.212012!10195-103E6;0.330029!10277-104E7;0.327415!10434-106E2;0.993376!10550-107I1;0.294435!10545-107H5;0.137608!10544-107H4;0.61518!10704-109H2;0.976426!10510-107D6;0.0877526!10558-107I9;0.0865098!10020-101D2;0.866615!10732-110B3;0.619366!10049-101G4;0.593021!10698-109G5;0.0787728!10437-106E5;0.499307!10417-106C3;0.659569!10035-101E8;0.666121!10171-103B9;0.328004!10157-103A4;0.232565!10034-101E7;0.259!10072-101I9;0.294654!10199-103F1;0.0684011!10200-103F2;0.31292!10697-109G4;0.474149!10723-110A3;0.155464!10179-103C8;0.972056!10160-103A7;0.451837!10180-103C9;0.279552!10162-103A9;0.935259!10021-101D3;0.564224!10840-111E3;0.731783!10706-109H4;0.559971!10033-101E6;0.852228!10032-101E5;0.239906!10490-107B4;0.365596!10439-106E7;0.574614!10022-101D4;0.718108!10176-103C5;0.811381!10469-106I1;0.198541!10067-101I4;0.268101!10411-106B6;0.47781!10471-106I3;0.956625!10030-101E3;0.13046!10475-106I7;0.285225!10787-110H4;0.0216943!10477-106I9;0.172923!10695-109G2;0.000208816!11771-123I7;0.947213!11772-123I8;0.0697648!11773-123I9;0.348346!10093-102C3;0.184629!10442-106F1;0.0927069!10442-106F1;0.0572276!10201-103F3;0.0820425!10639-108I9;0.577927!11843-124H7;0.143482!11841-124H5;0.0552731!10693-109F9;0.913825!10436-106E4;0.419019!10483-107A6;0.252822!10282-104F3;0.491558!10023-101D5;0.251791!10066-101I3;0.387897!10065-101I2;0.864528!10800-110I8;0.723369!10610-108F7;0.0014597!10841-111E4;0.0168369!10541-107H1;0.0407999!10842-111E5;0.00191557!10562-108A4;0.0202026!10024-101D6;0.0440444!10064-101I1;0.624993!10609-108F6;0.889442!10048-101G3;0.601095!10781-110G7;0.426438!10181-103D1;0.802907!10159-103A6;0.320583!10056-101H2;0.343066!10737-110B8;0.257778!10025-101D7;0.490311!10044-101F8;0.421061!10424-106D1;0.680138!10463-106H4;0.92139!10616-108G4;0.84416!10486-107A9;0.394642!10062-101H8;0.710994!10202-103F4;0.578972!10158-103A5;0.143662!10441-106E9;0.66058!10031-101E4;0.00128565!10063-101H9;0.368477!10063-101H9;0.170893!11763-123H8;0.92511!11765-123I1;0.797945!11768-123I4;0.332566!10807-111A6;0.392871!10790-110H7;5.53869e-06!10798-110I6;1.82896e-05!10786-110H3;0.000656026!10591-108D6;0.00059878!10593-108D8;0.000247907!10590-108D5;0.0561704!10026-101D8;0.00509209!10096-102C6;0.353213!10168-103B6;0.0495039!10154-103A1;0.413466!10209-103G2;0.327773!10061-101H7;0.672927!10027-101D9;0.556192!10043-101F7;0.207505!10783-110G9;0.0550599!10028-101E1;0.654601!10060-101H6;0.478168!10203-103F5;0.737102!10059-101H5;0.683846!10047-101G2;0.659692!10029-101E2;0.845908!10058-101H4;0.386275!10418-106C4;0.820592!10492-107B6;0.000976!10694-109G1;0.293701!10797-110I5;0.0415585!10057-101H3;0.0157649!10100-102D1;0.873617!10055-101H1;0.659572!10204-103F6;0.366176!10191-103E2;0.404648!10563-108A5;0.908127
|name=motif_CNGATT
|name=motif_CNGATT
|tomtom_result=NFYA#MA0060.1;3;0.00317356;1.51061;1;6;CAGATT;GCGCTGATTGGCTGAG;-!HAP3#MA0314.1;1;0.00834087;3.97025;1;6;CAGATT;TCTGATTGGTTCAGA;+!Gsc#MA0190.1;-1;0.00841475;4.00542;1;5;CAGATT;GGATTA;-!HAP4#MA0315.1;6;0.00874228;4.16132;1;6;CAGATT;TCGCCTCTGATTGGT;-!HAP5#MA0316.1;6;0.0109508;5.21257;1;6;CAGATT;TGGGATCTGATTGGT;+!Gfi#MA0038.1;2;0.0114066;5.42953;1;6;CAGATT;CAGTGATTTG;-!ASH1#MA0276.1;1;0.0114066;5.42953;1;6;CAGATT;CCCGATCCGG;-!YAP6#MA0418.1;3;0.0143402;6.82595;1;6;CAGATT;GGTCTGATTACGTAAGCGAC;+!MCM1#MA0331.1;1;0.0159161;7.57608;1;6;CAGATT;CCCAATTAGGAA;+!myb.Ph3#MA0054.1;3;0.0159335;7.58436;1;6;CAGATT;TAACCGTTT;+!oc#MA0234.1;-1;0.0170008;8.09239;1;5;CAGATT;GGATTA;-!AG#MA0005.1;2;0.0192936;9.18376;1;6;CAGATT;ACCAAATTTGG;-!bcd#MA0212.1;-1;0.0194347;9.25092;1;5;CAGATT;GGATTA;-
}}
}}

Latest revision as of 12:33, 7 September 2012

Full Name: motif_CNGATT

Motif matrix
POACGT
01038400
0296969696
03003840
04384000
05000384
06000384

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFYA#MA0060.130.003173561.5106116CAGATTGCGCTGATTGGCTGAG-
HAP3#MA0314.110.008340873.9702516CAGATTTCTGATTGGTTCAGA+
Gsc#MA0190.1-10.008414754.0054215CAGATTGGATTA-
HAP4#MA0315.160.008742284.1613216CAGATTTCGCCTCTGATTGGT-
HAP5#MA0316.160.01095085.2125716CAGATTTGGGATCTGATTGGT+
Gfi#MA0038.120.01140665.4295316CAGATTCAGTGATTTG-
ASH1#MA0276.110.01140665.4295316CAGATTCCCGATCCGG-
YAP6#MA0418.130.01434026.8259516CAGATTGGTCTGATTACGTAAGCGAC+
MCM1#MA0331.110.01591617.5760816CAGATTCCCAATTAGGAA+
myb.Ph3#MA0054.130.01593357.5843616CAGATTTAACCGTTT+
oc#MA0234.1-10.01700088.0923915CAGATTGGATTA-
AG#MA0005.120.01929369.1837616CAGATTACCAAATTTGG-
bcd#MA0212.1-10.01943479.2509215CAGATTGGATTA-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_CNGATT&oldid=2133694"